Wall clock time and date at job start Fri Apr 10 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46272 * 2 1 4 4 C 1.53046 * 109.45632 * 240.03044 * 2 1 3 5 5 C 1.53187 * 109.33885 * 178.59874 * 4 2 1 6 6 H 1.09003 * 109.58587 * 294.86559 * 5 4 2 7 7 C 1.52998 * 109.59029 * 174.43744 * 5 4 2 8 8 N 1.47000 * 108.74007 * 54.62362 * 5 4 2 9 9 S 1.65594 * 120.61669 * 126.38908 * 8 5 4 10 10 O 1.42098 * 106.40236 * 196.37353 * 9 8 5 11 11 O 1.42096 * 106.40259 * 329.28900 * 9 8 5 12 12 N 1.65600 * 107.21952 * 82.83457 * 9 8 5 13 13 C 1.46499 * 120.00020 * 84.07150 * 12 9 8 14 14 C 1.46504 * 119.99665 * 264.06882 * 12 9 8 15 15 C 1.50708 * 109.46843 * 95.00155 * 14 12 9 16 16 H 1.07998 * 119.99539 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99874 * 179.97438 * 15 14 12 18 18 N 1.31507 * 119.99587 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47305 * 89.99625 * 19 17 15 21 21 H 1.48494 * 109.47081 * 210.00067 * 19 17 15 22 22 H 1.48504 * 109.46822 * 329.99873 * 19 17 15 23 23 C 1.46926 * 118.75091 * 306.40762 * 8 5 4 24 24 C 1.53032 * 109.45992 * 119.96416 * 2 1 3 25 25 H 1.09007 * 109.50135 * 61.40336 * 24 2 1 26 26 C 1.52997 * 109.49839 * 301.33094 * 24 2 1 27 27 N 1.46906 * 109.47320 * 175.00294 * 26 24 2 28 28 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46533 * 299.96802 * 1 2 3 30 30 H 1.08992 * 109.46981 * 59.96698 * 1 2 3 31 31 H 1.08996 * 109.49691 * 298.56295 * 4 2 1 32 32 H 1.08997 * 109.50062 * 58.62928 * 4 2 1 33 33 H 1.09001 * 109.47012 * 68.77260 * 7 5 4 34 34 H 1.08991 * 109.47554 * 188.77852 * 7 5 4 35 35 H 1.09000 * 109.46951 * 308.78378 * 7 5 4 36 36 H 1.09000 * 109.46657 * 84.95983 * 13 12 9 37 37 H 1.09000 * 109.46417 * 204.95421 * 13 12 9 38 38 H 1.08998 * 109.47271 * 324.95792 * 13 12 9 39 39 H 1.08997 * 109.47381 * 214.99689 * 14 12 9 40 40 H 1.08998 * 109.47260 * 335.00744 * 14 12 9 41 41 H 0.97003 * 119.99770 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.59215 * 293.82139 * 23 8 5 43 43 H 1.09001 * 109.58705 * 173.39154 * 23 8 5 44 44 H 1.08996 * 109.47273 * 295.00086 * 26 24 2 45 45 H 1.09001 * 109.47278 * 55.00517 * 26 24 2 46 46 H 1.00898 * 111.00115 * 56.04336 * 27 26 24 47 47 H 1.00896 * 111.00384 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6888 -1.2652 6 1 3.9142 0.3408 -1.3683 7 6 4.0904 -1.5251 -2.4364 8 7 4.0679 -1.2490 -0.0001 9 16 5.1657 -2.4887 -0.0001 10 8 5.1444 -3.0436 1.3079 11 8 4.9104 -3.2508 -1.1718 12 7 6.6656 -1.8152 -0.1978 13 6 7.3930 -1.2935 0.9620 14 6 7.2652 -1.7412 -1.5325 15 6 6.9753 -0.3925 -2.1393 16 1 6.4015 0.3364 -1.5861 17 6 7.4426 -0.0891 -3.4005 18 7 7.1892 1.0876 -3.9301 19 14 8.4344 -1.3501 -4.3573 20 1 7.5167 -2.1888 -5.1696 21 1 9.3902 -0.6514 -5.2536 22 1 9.1846 -2.2126 -3.4094 23 6 3.5715 -0.6886 1.2641 24 6 2.0399 -0.7207 1.2500 25 1 1.6974 -1.7555 1.2386 26 6 1.5029 -0.0187 2.4989 27 7 1.8930 -0.7789 3.6939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5134 0.8903 30 1 -0.3633 0.5143 -0.8896 31 1 1.6978 -1.7557 -1.2382 32 1 1.6567 -0.2213 -2.1399 33 1 3.8420 -1.0296 -3.3750 34 1 5.1723 -1.6304 -2.3564 35 1 3.6266 -2.5112 -2.4124 36 1 7.9356 -2.1056 1.4458 37 1 8.0982 -0.5295 0.6348 38 1 6.6863 -0.8573 1.6679 39 1 8.3434 -1.8804 -1.4547 40 1 6.8425 -2.5223 -2.1645 41 1 7.5176 1.3009 -4.8175 42 1 3.9144 0.3409 1.3672 43 1 3.9417 -1.2845 2.0983 44 1 1.9180 0.9875 2.5570 45 1 0.4158 0.0393 2.4441 46 1 2.8936 -0.9022 3.7334 47 1 1.5496 -0.3356 4.5327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422557182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:04 Heat of formation + Delta-G solvation = -89.004495 kcal Electronic energy + Delta-G solvation = -28137.354935 eV Core-core repulsion = 24481.167820 eV Total energy + Delta-G solvation = -3656.187115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40719 -38.65113 -37.36823 -36.88413 -36.28962 -34.47145 -34.43594 -32.56892 -30.30128 -28.86292 -27.82968 -26.78594 -25.39420 -23.77241 -22.97196 -22.44799 -20.81146 -19.79315 -19.08134 -18.55916 -18.14728 -17.46255 -16.67900 -16.55243 -16.16312 -15.72762 -15.46328 -15.33439 -15.07561 -14.76476 -14.67468 -14.44695 -14.40274 -14.27949 -13.95320 -13.62364 -13.52422 -13.26941 -13.10343 -12.99902 -12.90420 -12.70062 -12.61890 -12.38825 -12.32944 -12.17839 -12.04326 -11.94882 -11.65339 -11.60747 -11.44701 -11.20897 -10.93338 -10.71835 -9.93185 -9.69730 -9.53719 -8.24277 -6.25018 -0.30859 1.37428 1.42063 1.47295 1.93991 2.36975 2.55630 3.10247 3.38160 3.54040 3.66983 3.81110 3.88872 4.01047 4.07346 4.18096 4.37208 4.43917 4.50692 4.62775 4.64626 4.66774 4.70612 4.75110 4.80196 4.86117 4.87795 4.93057 4.99291 5.02694 5.07423 5.14672 5.23252 5.25834 5.33452 5.40362 5.47729 5.48804 5.58811 5.60715 5.80125 5.92039 6.28907 6.35260 6.64565 6.77035 7.36336 8.90235 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.005424 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.825886 B = 5160.797111 C = 5909.860369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.074 0.926 4 C -0.117 4.117 5 C 0.168 3.832 6 H 0.061 0.939 7 C -0.189 4.189 8 N -0.995 5.995 9 S 2.790 3.210 10 O -1.006 7.006 11 O -1.000 7.000 12 N -1.001 6.001 13 C 0.098 3.902 14 C 0.216 3.784 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.031 3.969 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.247 1.247 23 C 0.115 3.885 24 C -0.088 4.088 25 H 0.067 0.933 26 C 0.071 3.929 27 N -0.863 5.863 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.089 0.911 46 H 0.341 0.659 47 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -0.330 11.591 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.063 3.937 6 H 0.079 0.921 7 C -0.247 4.247 8 N -0.835 5.835 9 S 2.801 3.199 10 O -0.990 6.990 11 O -0.984 6.984 12 N -0.841 5.841 13 C -0.048 4.048 14 C 0.091 3.909 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.168 4.168 18 N -0.571 5.571 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.170 1.170 23 C -0.010 4.010 24 C -0.109 4.109 25 H 0.085 0.915 26 C -0.060 4.060 27 N -0.395 5.395 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.154 0.846 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.714 -1.756 11.249 15.634 hybrid contribution 1.399 1.012 -0.795 1.901 sum -9.315 -0.744 10.454 14.022 Atomic orbital electron populations 1.21847 0.93398 1.02075 1.02582 1.21063 0.96816 0.99191 0.92984 0.90760 1.22005 0.93177 1.01321 0.99112 1.20832 0.94697 0.97040 0.81150 0.92051 1.22867 1.04923 0.99608 0.97346 1.57990 1.58254 1.55068 1.12192 1.01557 0.72581 0.73963 0.71757 1.93494 1.87324 1.77056 1.41102 1.93631 1.84439 1.71005 1.49310 1.57500 1.34658 1.77616 1.14340 1.21463 0.97669 0.99593 0.86033 1.19458 0.95212 0.96534 0.79671 1.21435 1.34217 0.99342 1.00893 0.92535 1.25450 0.96670 0.96468 0.98242 1.69989 1.47334 1.22665 1.17107 0.86252 0.79850 0.80365 0.79937 1.19757 1.20801 1.17031 1.21670 0.95397 0.99548 0.84362 1.21496 0.93584 1.00559 0.95213 0.91466 1.21844 1.01283 0.94252 0.88614 1.58725 1.19345 1.56009 1.05381 0.92873 0.90996 0.92059 0.92002 0.89934 0.92702 0.89863 0.90796 0.91884 0.90516 0.91254 0.93852 0.94570 0.92561 0.90913 0.89189 0.94386 0.89270 0.84553 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.82 71.98 0.63 -1.81 16 2 C -0.08 -1.79 2.23 -10.77 -0.02 -1.81 16 3 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -3.20 4.64 30.67 0.14 -3.05 16 5 C 0.17 5.86 3.52 44.96 0.16 6.02 16 6 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 7 C -0.19 -7.76 7.41 71.98 0.53 -7.23 16 8 N -0.99 -33.56 3.35 -490.61 -1.64 -35.20 16 9 S 2.79 109.12 5.65 -56.49 -0.32 108.80 16 10 O -1.01 -39.93 15.93 -128.00 -2.04 -41.97 16 11 O -1.00 -44.22 11.91 -128.00 -1.53 -45.74 16 12 N -1.00 -39.51 3.23 -543.21 -1.75 -41.26 16 13 C 0.10 3.13 10.27 127.77 1.31 4.44 16 14 C 0.22 9.76 3.72 85.63 0.32 10.08 16 15 C -0.52 -26.57 7.86 25.60 0.20 -26.37 16 16 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 17 C 0.03 1.68 5.47 84.66 0.46 2.14 16 18 N -0.93 -53.40 13.96 21.45 0.30 -53.10 16 19 Si 0.91 41.49 27.47 68.60 1.88 43.38 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 23 C 0.12 3.10 5.42 86.37 0.47 3.57 16 24 C -0.09 -2.01 2.09 -10.72 -0.02 -2.03 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 C 0.07 1.24 6.00 86.30 0.52 1.76 16 27 N -0.86 -15.15 9.62 -186.71 -1.80 -16.95 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.01 6.29 -2.39 -0.02 0.99 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 3.85 2.00 -2.39 0.00 3.84 16 35 H 0.07 3.01 6.47 -2.39 -0.02 2.99 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.45 8.03 -2.39 -0.02 2.43 16 38 H 0.07 1.91 8.09 -2.39 -0.02 1.90 16 39 H 0.04 1.89 7.17 -2.39 -0.02 1.87 16 40 H 0.04 1.72 5.63 -2.39 -0.01 1.70 16 41 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.09 2.41 5.58 -2.39 -0.01 2.40 16 44 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.38 6.14 -2.39 -0.01 1.36 16 46 H 0.34 6.14 7.39 -89.70 -0.66 5.48 16 47 H 0.35 4.54 9.08 -89.70 -0.81 3.73 16 Total: -1.00 -63.95 357.08 -2.74 -66.69 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.55 Total: 29.65 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.70 Total: -14.29 kcal Atomic # 7 Polarization: -141.62 SS G_CDS: -4.89 Total: -146.51 kcal Atomic # 8 Polarization: -84.15 SS G_CDS: -3.56 Total: -87.71 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.38 kcal Atomic # 16 Polarization: 109.12 SS G_CDS: -0.32 Total: 108.80 kcal Total: -63.95 -2.74 -66.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422557182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.316 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds