Wall clock time and date at job start Fri Apr 10 2020 18:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47328 * 2 1 4 4 C 1.34778 * 119.99774 * 298.44359 * 3 2 1 5 5 O 1.21273 * 120.00169 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99946 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47592 * 39.99720 * 6 4 3 8 8 N 1.46906 * 109.47116 * 159.99914 * 6 4 3 9 9 C 1.52998 * 109.46867 * 279.99666 * 6 4 3 10 10 C 1.53007 * 109.47067 * 175.00133 * 9 6 4 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 9 6 12 12 H 1.08005 * 120.00164 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00211 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00044 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99803 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46724 * 90.00440 * 15 13 11 17 17 H 1.48501 * 109.47231 * 210.00097 * 15 13 11 18 18 H 1.48499 * 109.47396 * 330.00557 * 15 13 11 19 19 C 1.50696 * 109.47356 * 239.99110 * 2 1 3 20 20 N 1.34776 * 120.00119 * 155.00085 * 19 2 1 21 21 O 1.21288 * 119.99935 * 335.00653 * 19 2 1 22 22 C 1.50708 * 109.46401 * 119.99645 * 2 1 3 23 23 C 1.38232 * 119.99925 * 85.23469 * 22 2 1 24 24 C 1.38234 * 119.99607 * 179.78757 * 23 22 2 25 25 C 1.38232 * 120.00324 * 0.43541 * 24 23 22 26 26 C 1.38237 * 120.00112 * 359.81223 * 25 24 23 27 27 C 1.38234 * 119.99671 * 265.49961 * 22 2 1 28 28 H 1.08993 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46954 * 300.01105 * 1 2 3 30 30 H 1.09008 * 109.46578 * 60.00168 * 1 2 3 31 31 H 0.97003 * 120.00299 * 118.44855 * 3 2 1 32 32 H 1.00891 * 111.00136 * 296.04398 * 8 6 4 33 33 H 1.00898 * 111.00104 * 60.00263 * 8 6 4 34 34 H 1.09002 * 109.47432 * 294.99991 * 9 6 4 35 35 H 1.09002 * 109.47278 * 55.00328 * 9 6 4 36 36 H 1.09000 * 109.46956 * 299.99665 * 10 9 6 37 37 H 1.08996 * 109.47059 * 60.00379 * 10 9 6 38 38 H 0.97007 * 120.00215 * 179.97438 * 14 13 11 39 39 H 0.97001 * 119.99522 * 0.02562 * 20 19 2 40 40 H 0.96996 * 120.00061 * 179.72700 * 20 19 2 41 41 H 1.07994 * 120.00151 * 359.97438 * 23 22 2 42 42 H 1.07999 * 120.00065 * 180.26917 * 24 23 22 43 43 H 1.08003 * 120.00079 * 179.83726 * 25 24 23 44 44 H 1.07994 * 120.00685 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.00402 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.7189 2.2017 -1.0263 5 8 1.0447 1.7970 -1.9496 6 6 2.2217 3.6224 -1.0267 7 1 3.2440 3.6461 -0.6493 8 7 2.1931 4.1517 -2.3967 9 6 1.3271 4.4802 -0.1297 10 6 1.9082 5.8921 -0.0304 11 6 1.0273 6.7369 0.8535 12 1 0.1413 6.3097 1.2996 13 6 1.3518 8.0555 1.0921 14 7 0.5827 8.7929 1.8631 15 14 2.8838 8.7947 0.3200 16 1 2.5399 9.3773 -1.0019 17 1 3.4200 9.8593 1.2057 18 1 3.9091 7.7353 0.1425 19 6 2.0324 -0.7106 -1.2303 20 7 3.2544 -0.4248 -1.7218 21 8 1.3370 -1.5396 -1.7783 22 6 2.0322 -0.7104 1.2306 23 6 2.1688 -2.0860 1.2272 24 6 2.6336 -2.7371 2.3546 25 6 2.9533 -2.0136 3.4882 26 6 2.8119 -0.6385 3.4933 27 6 2.3511 0.0131 2.3645 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 2.5574 1.7050 0.7386 32 1 2.8258 3.6418 -2.9947 33 1 1.2554 4.1403 -2.7692 34 1 0.3250 4.5289 -0.5559 35 1 1.2777 4.0369 0.8649 36 1 2.9102 5.8434 0.3959 37 1 1.9575 6.3355 -1.0249 38 1 0.8112 9.7205 2.0312 39 1 3.8106 0.2380 -1.2833 40 1 3.5794 -0.8850 -2.5114 41 1 1.9152 -2.6516 0.3429 42 1 2.7444 -3.8114 2.3506 43 1 3.3139 -2.5226 4.3699 44 1 3.0620 -0.0731 4.3788 45 1 2.2407 1.0874 2.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424110891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:18 Heat of formation + Delta-G solvation = -52.530438 kcal Electronic energy + Delta-G solvation = -27367.802876 eV Core-core repulsion = 23577.753444 eV Total energy + Delta-G solvation = -3790.049433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36369 -39.41982 -38.83468 -35.93081 -35.26177 -33.71541 -32.82091 -32.06073 -31.18104 -30.55041 -29.57326 -26.87185 -25.09521 -23.84767 -22.98882 -22.29654 -20.75983 -20.08384 -19.74086 -18.17529 -17.88186 -17.17989 -16.81581 -16.57554 -16.02012 -15.60847 -15.11910 -15.02161 -14.68879 -14.51548 -14.25175 -14.13127 -13.98724 -13.70532 -13.52932 -13.10566 -12.72648 -12.55779 -12.41774 -12.32899 -12.13432 -11.76451 -11.56302 -11.41998 -11.05144 -10.91827 -10.45150 -10.37086 -10.05933 -9.86989 -9.76500 -9.64513 -9.47937 -9.28550 -9.15729 -9.02070 -8.57484 -8.46453 -6.02621 -4.00606 0.90184 1.03398 2.33953 2.49928 2.94334 3.24197 3.34520 3.41376 3.43993 3.45500 4.15983 4.47838 4.48836 4.62553 4.64251 4.70005 4.79477 4.84424 4.95741 5.12457 5.23289 5.26605 5.33331 5.51970 5.56851 5.58700 5.64559 5.71853 5.98991 6.08532 6.16477 6.16633 6.21858 6.25316 6.40406 6.55160 6.59411 6.80756 7.04956 7.14010 7.31071 7.34479 7.51368 7.57207 7.82296 8.01761 8.07561 8.54207 9.01979 9.60130 11.10800 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003428 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.252554 B = 8166.765005 C = 9264.027520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.203 3.797 3 N -0.728 5.728 4 C 0.483 3.517 5 O -0.532 6.532 6 C 0.077 3.923 7 H 0.099 0.901 8 N -0.809 5.809 9 C -0.088 4.088 10 C -0.004 4.004 11 C -0.522 4.522 12 H 0.069 0.931 13 C 0.066 3.934 14 N -0.906 5.906 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.265 1.265 19 C 0.537 3.463 20 N -0.847 5.847 21 O -0.535 6.535 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.109 4.109 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.407 0.593 32 H 0.335 0.665 33 H 0.351 0.649 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.400 0.600 40 H 0.401 0.599 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -22.661 0.237 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.113 3.887 3 N -0.386 5.386 4 C 0.269 3.731 5 O -0.407 6.407 6 C -0.039 4.039 7 H 0.117 0.883 8 N -0.337 5.337 9 C -0.126 4.126 10 C -0.041 4.041 11 C -0.560 4.560 12 H 0.087 0.913 13 C -0.135 4.135 14 N -0.545 5.545 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.189 1.189 19 C 0.320 3.680 20 N -0.409 5.409 21 O -0.410 6.410 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.127 4.127 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.244 0.756 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.232 0.768 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.128 -22.562 -0.294 23.983 hybrid contribution 1.057 -0.165 -0.258 1.101 sum 9.186 -22.727 -0.552 24.519 Atomic orbital electron populations 1.22052 0.90434 1.03794 1.04154 1.19280 0.96654 0.81846 0.90949 1.46564 1.56086 1.10591 1.25350 1.22838 0.79604 0.89483 0.81221 1.90701 1.37762 1.76653 1.35612 1.21893 1.01842 0.86906 0.93264 0.88321 1.59028 1.14633 1.58140 1.01922 1.21485 0.97815 0.97101 0.96200 1.19480 0.95948 0.91086 0.97596 1.21167 1.10408 0.95465 1.28984 0.91296 1.25019 0.96621 0.97085 0.94782 1.69923 1.38383 1.08056 1.38103 0.86733 0.84041 0.78932 0.79252 1.20297 1.21720 1.18928 1.20351 0.81134 0.81781 0.84750 1.43709 1.18484 1.45454 1.33291 1.90733 1.56100 1.34381 1.59820 1.19478 1.01264 0.94110 0.94103 1.21088 0.98758 0.93436 0.99238 1.21141 0.99035 1.00090 0.92990 1.21257 0.99502 0.94353 0.98238 1.21190 0.98955 0.94662 0.98171 1.20987 0.98970 1.00266 0.92497 0.90704 0.91279 0.89675 0.75553 0.85326 0.83450 0.92105 0.92126 0.96911 0.95239 0.92811 0.77209 0.76829 0.85490 0.85708 0.85764 0.85314 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 7.94 37.16 0.29 -1.62 16 2 C 0.20 2.32 0.83 -134.12 -0.11 2.21 16 3 N -0.73 -7.68 4.18 -49.77 -0.21 -7.89 16 4 C 0.48 6.39 6.26 -10.99 -0.07 6.32 16 5 O -0.53 -8.63 13.49 5.56 0.08 -8.55 16 6 C 0.08 1.07 3.15 -68.86 -0.22 0.86 16 7 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 8 N -0.81 -11.54 8.44 -5.65 -0.05 -11.59 16 9 C -0.09 -1.57 4.78 -26.73 -0.13 -1.70 16 10 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 11 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 12 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 13 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.91 -27.67 13.96 55.43 0.77 -26.89 16 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 19 C 0.54 6.85 4.33 -10.99 -0.05 6.80 16 20 N -0.85 -7.97 8.57 31.22 0.27 -7.70 16 21 O -0.54 -8.67 16.34 5.55 0.09 -8.58 16 22 C -0.09 -0.88 4.80 -104.62 -0.50 -1.38 16 23 C -0.11 -1.04 9.15 -39.59 -0.36 -1.40 16 24 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.11 -0.87 10.05 -39.58 -0.40 -1.26 16 27 C -0.11 -0.95 9.03 -39.58 -0.36 -1.30 16 28 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.33 6.28 -51.92 -0.33 1.01 16 31 H 0.41 3.44 6.36 -40.82 -0.26 3.18 16 32 H 0.33 4.04 9.06 -39.30 -0.36 3.68 16 33 H 0.35 5.27 8.58 -39.29 -0.34 4.93 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 37 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 39 H 0.40 3.02 8.16 -40.82 -0.33 2.69 16 40 H 0.40 3.29 8.93 -40.82 -0.36 2.93 16 41 H 0.13 1.35 6.76 -52.49 -0.36 1.00 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -34.88 368.50 -7.77 -42.65 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -6.37 Total: 14.41 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.23 Total: -8.24 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.79 Total: -54.07 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.17 Total: -17.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.88 -7.77 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424110891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.882 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds