Wall clock time and date at job start Fri Apr 10 2020 18:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47328 * 2 1 4 4 C 1.34778 * 119.99774 * 298.44359 * 3 2 1 5 5 O 1.21273 * 120.00169 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99946 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47592 * 39.99720 * 6 4 3 8 8 N 1.46906 * 109.47116 * 159.99914 * 6 4 3 9 9 C 1.52998 * 109.46867 * 279.99666 * 6 4 3 10 10 C 1.53007 * 109.47067 * 175.00133 * 9 6 4 11 11 C 1.50700 * 109.47190 * 180.02562 * 10 9 6 12 12 H 1.08005 * 120.00164 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00211 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00044 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99803 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46724 * 90.00440 * 15 13 11 17 17 H 1.48501 * 109.47231 * 210.00097 * 15 13 11 18 18 H 1.48499 * 109.47396 * 330.00557 * 15 13 11 19 19 C 1.50696 * 109.47356 * 239.99110 * 2 1 3 20 20 N 1.34776 * 120.00119 * 155.00085 * 19 2 1 21 21 O 1.21288 * 119.99935 * 335.00653 * 19 2 1 22 22 C 1.50708 * 109.46401 * 119.99645 * 2 1 3 23 23 C 1.38232 * 119.99925 * 85.23469 * 22 2 1 24 24 C 1.38234 * 119.99607 * 179.78757 * 23 22 2 25 25 C 1.38232 * 120.00324 * 0.43541 * 24 23 22 26 26 C 1.38237 * 120.00112 * 359.81223 * 25 24 23 27 27 C 1.38234 * 119.99671 * 265.49961 * 22 2 1 28 28 H 1.08993 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46954 * 300.01105 * 1 2 3 30 30 H 1.09008 * 109.46578 * 60.00168 * 1 2 3 31 31 H 0.97003 * 120.00299 * 118.44855 * 3 2 1 32 32 H 1.00891 * 111.00136 * 296.04398 * 8 6 4 33 33 H 1.00898 * 111.00104 * 60.00263 * 8 6 4 34 34 H 1.09002 * 109.47432 * 294.99991 * 9 6 4 35 35 H 1.09002 * 109.47278 * 55.00328 * 9 6 4 36 36 H 1.09000 * 109.46956 * 299.99665 * 10 9 6 37 37 H 1.08996 * 109.47059 * 60.00379 * 10 9 6 38 38 H 0.97007 * 120.00215 * 179.97438 * 14 13 11 39 39 H 0.97001 * 119.99522 * 0.02562 * 20 19 2 40 40 H 0.96996 * 120.00061 * 179.72700 * 20 19 2 41 41 H 1.07994 * 120.00151 * 359.97438 * 23 22 2 42 42 H 1.07999 * 120.00065 * 180.26917 * 24 23 22 43 43 H 1.08003 * 120.00079 * 179.83726 * 25 24 23 44 44 H 1.07994 * 120.00685 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.00402 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.7189 2.2017 -1.0263 5 8 1.0447 1.7970 -1.9496 6 6 2.2217 3.6224 -1.0267 7 1 3.2440 3.6461 -0.6493 8 7 2.1931 4.1517 -2.3967 9 6 1.3271 4.4802 -0.1297 10 6 1.9082 5.8921 -0.0304 11 6 1.0273 6.7369 0.8535 12 1 0.1413 6.3097 1.2996 13 6 1.3518 8.0555 1.0921 14 7 0.5827 8.7929 1.8631 15 14 2.8838 8.7947 0.3200 16 1 2.5399 9.3773 -1.0019 17 1 3.4200 9.8593 1.2057 18 1 3.9091 7.7353 0.1425 19 6 2.0324 -0.7106 -1.2303 20 7 3.2544 -0.4248 -1.7218 21 8 1.3370 -1.5396 -1.7783 22 6 2.0322 -0.7104 1.2306 23 6 2.1688 -2.0860 1.2272 24 6 2.6336 -2.7371 2.3546 25 6 2.9533 -2.0136 3.4882 26 6 2.8119 -0.6385 3.4933 27 6 2.3511 0.0131 2.3645 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 2.5574 1.7050 0.7386 32 1 2.8258 3.6418 -2.9947 33 1 1.2554 4.1403 -2.7692 34 1 0.3250 4.5289 -0.5559 35 1 1.2777 4.0369 0.8649 36 1 2.9102 5.8434 0.3959 37 1 1.9575 6.3355 -1.0249 38 1 0.8112 9.7205 2.0312 39 1 3.8106 0.2380 -1.2833 40 1 3.5794 -0.8850 -2.5114 41 1 1.9152 -2.6516 0.3429 42 1 2.7444 -3.8114 2.3506 43 1 3.3139 -2.5226 4.3699 44 1 3.0620 -0.0731 4.3788 45 1 2.2407 1.0874 2.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424110891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:18 Heat of formation + Delta-G solvation = -80.883133 kcal Electronic energy + Delta-G solvation = -27369.032341 eV Core-core repulsion = 23577.753444 eV Total energy + Delta-G solvation = -3791.278898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31215 -40.40401 -39.68176 -37.07135 -36.48604 -34.76667 -34.62259 -32.93421 -32.26166 -31.82511 -30.41759 -28.39205 -26.20475 -25.11498 -23.87328 -23.03803 -22.18495 -21.31430 -20.71722 -19.24726 -18.81754 -18.64182 -18.10097 -17.53876 -17.01510 -16.61879 -16.30944 -16.00076 -15.80846 -15.68280 -15.36562 -15.16284 -15.01335 -14.95230 -14.67310 -14.27510 -14.01236 -13.80203 -13.60059 -13.41757 -13.25872 -13.16192 -12.80172 -12.46359 -12.29965 -12.04124 -11.90953 -11.76523 -11.57572 -11.41500 -11.24429 -11.07624 -10.78146 -10.68434 -10.40331 -9.91640 -9.77752 -9.65265 -8.21973 -6.25089 0.24629 0.40429 1.35601 1.41834 1.44388 1.45546 1.57661 1.97493 2.38728 2.43910 2.77634 3.15133 3.34526 3.53068 3.69837 3.78104 3.95192 4.00862 4.07313 4.09847 4.25642 4.29199 4.50761 4.52434 4.59836 4.66185 4.74146 4.86870 4.92078 5.03476 5.07335 5.13687 5.18139 5.47955 5.49791 5.55025 5.56685 5.69255 5.74573 5.76691 5.98732 6.06363 6.22937 6.35718 6.36232 6.52380 6.84284 7.03664 7.15810 7.39527 8.94900 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003428 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.252554 B = 8166.765005 C = 9264.027520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.208 3.792 3 N -0.710 5.710 4 C 0.489 3.511 5 O -0.561 6.561 6 C 0.088 3.912 7 H 0.129 0.871 8 N -0.817 5.817 9 C -0.081 4.081 10 C 0.003 3.997 11 C -0.529 4.529 12 H 0.028 0.972 13 C 0.001 3.999 14 N -0.956 5.956 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.289 1.289 18 H -0.237 1.237 19 C 0.532 3.468 20 N -0.830 5.830 21 O -0.578 6.578 22 C -0.098 4.098 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.420 0.580 32 H 0.349 0.651 33 H 0.345 0.655 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.411 0.589 40 H 0.408 0.592 41 H 0.111 0.889 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.089 -23.422 0.845 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.118 3.882 3 N -0.368 5.368 4 C 0.275 3.725 5 O -0.439 6.439 6 C -0.028 4.028 7 H 0.147 0.853 8 N -0.346 5.346 9 C -0.119 4.119 10 C -0.035 4.035 11 C -0.568 4.568 12 H 0.046 0.954 13 C -0.195 4.195 14 N -0.598 5.598 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.159 1.159 19 C 0.316 3.684 20 N -0.393 5.393 21 O -0.456 6.456 22 C -0.099 4.099 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.132 4.132 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.261 0.739 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.242 0.758 40 H 0.240 0.760 41 H 0.129 0.871 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.305 -23.336 0.331 25.932 hybrid contribution 0.013 0.016 -0.370 0.370 sum 11.318 -23.320 -0.039 25.922 Atomic orbital electron populations 1.21981 0.92079 1.03185 1.02982 1.19125 0.95488 0.82031 0.91572 1.46360 1.55415 1.10057 1.24946 1.22644 0.79094 0.89457 0.81296 1.90712 1.38989 1.77169 1.37012 1.21721 1.02298 0.86206 0.92576 0.85302 1.59028 1.14634 1.58615 1.02294 1.21281 0.97227 0.95676 0.97721 1.19371 0.95618 0.92549 0.95943 1.21583 1.09807 0.96277 1.29091 0.95400 1.26021 1.00349 0.97729 0.95391 1.70089 1.40871 1.08570 1.40245 0.85612 0.80171 0.78567 0.77932 1.20102 1.21561 1.15948 1.20571 0.81626 0.81364 0.84860 1.43574 1.17497 1.45079 1.33141 1.90710 1.57471 1.36336 1.61109 1.19326 1.02626 0.94141 0.93760 1.21066 0.99871 0.93469 0.99539 1.21383 0.98359 1.01154 0.92585 1.21596 0.98343 0.94384 0.98687 1.21497 0.98105 0.95105 0.98411 1.21124 0.98980 1.00736 0.92364 0.91138 0.90570 0.92499 0.73924 0.83721 0.84166 0.94400 0.91156 0.95363 0.95588 0.92754 0.75843 0.75993 0.87122 0.83965 0.83218 0.83270 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 7.94 71.98 0.57 -3.29 16 2 C 0.21 4.64 0.83 2.12 0.00 4.65 16 3 N -0.71 -13.75 4.18 -429.77 -1.80 -15.54 16 4 C 0.49 12.23 6.26 87.66 0.55 12.78 16 5 O -0.56 -18.01 13.49 -3.01 -0.04 -18.05 16 6 C 0.09 2.24 3.15 44.17 0.14 2.38 16 7 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 8 N -0.82 -21.63 8.44 -171.80 -1.45 -23.08 16 9 C -0.08 -2.78 4.78 30.60 0.15 -2.64 16 10 C 0.00 0.12 3.93 29.85 0.12 0.23 16 11 C -0.53 -29.56 9.66 25.60 0.25 -29.31 16 12 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 13 C 0.00 0.06 5.47 84.65 0.46 0.53 16 14 N -0.96 -59.66 13.96 21.45 0.30 -59.36 16 15 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 19 C 0.53 13.46 4.33 87.66 0.38 13.84 16 20 N -0.83 -14.57 8.57 -173.53 -1.49 -16.06 16 21 O -0.58 -19.23 16.34 -3.05 -0.05 -19.28 16 22 C -0.10 -1.81 4.80 -19.86 -0.10 -1.90 16 23 C -0.12 -2.26 9.15 22.27 0.20 -2.05 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.11 -1.30 10.05 22.27 0.22 -1.08 16 26 C -0.11 -1.40 10.05 22.27 0.22 -1.18 16 27 C -0.11 -1.71 9.03 22.27 0.20 -1.51 16 28 H 0.07 1.91 7.87 -2.39 -0.02 1.89 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.85 6.28 -2.38 -0.01 1.84 16 31 H 0.42 5.92 6.36 -92.71 -0.59 5.33 16 32 H 0.35 7.55 9.06 -89.70 -0.81 6.74 16 33 H 0.34 10.05 8.58 -89.70 -0.77 9.28 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 37 H 0.03 1.15 7.18 -2.39 -0.02 1.13 16 38 H 0.26 15.40 8.31 -92.70 -0.77 14.62 16 39 H 0.41 5.27 8.16 -92.71 -0.76 4.51 16 40 H 0.41 6.22 8.93 -92.71 -0.83 5.39 16 41 H 0.11 2.41 6.76 -2.91 -0.02 2.39 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.14 1.75 6.41 -2.91 -0.02 1.73 16 Total: -1.00 -77.95 368.50 -1.78 -79.74 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -2.74 Total: 36.27 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 3.60 Total: -9.97 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.43 Total: -114.04 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.09 Total: -37.33 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -77.95 -1.78 -79.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424110891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.145 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds