Wall clock time and date at job start Fri Apr 10 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47073 * 2 1 4 4 C 1.34784 * 120.00057 * 61.56408 * 3 2 1 5 5 O 1.21280 * 119.99521 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00243 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47035 * 39.99037 * 6 4 3 8 8 N 1.46902 * 109.47236 * 159.99563 * 6 4 3 9 9 C 1.53003 * 109.46867 * 279.99524 * 6 4 3 10 10 C 1.52996 * 109.47160 * 175.00118 * 9 6 4 11 11 C 1.50697 * 109.47082 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99756 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99916 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47108 * 90.00148 * 15 13 11 17 17 H 1.48496 * 109.47216 * 210.00420 * 15 13 11 18 18 H 1.48501 * 109.47068 * 330.00683 * 15 13 11 19 19 C 1.50699 * 109.47540 * 120.00120 * 2 1 3 20 20 N 1.34772 * 120.00345 * 204.99925 * 19 2 1 21 21 O 1.21286 * 119.99452 * 25.00003 * 19 2 1 22 22 C 1.50701 * 109.47106 * 240.00316 * 2 1 3 23 23 C 1.38234 * 120.00187 * 94.33672 * 22 2 1 24 24 C 1.38234 * 120.00250 * 179.76542 * 23 22 2 25 25 C 1.38234 * 119.99717 * 0.50961 * 24 23 22 26 26 C 1.38233 * 119.99946 * 359.74211 * 25 24 23 27 27 C 1.38234 * 119.99919 * 274.61177 * 22 2 1 28 28 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47449 * 299.99904 * 1 2 3 30 30 H 1.09005 * 109.47666 * 59.99737 * 1 2 3 31 31 H 0.97000 * 120.00438 * 241.55906 * 3 2 1 32 32 H 1.00902 * 110.99691 * 59.99524 * 8 6 4 33 33 H 1.00898 * 111.00088 * 183.94918 * 8 6 4 34 34 H 1.09001 * 109.47022 * 295.00288 * 9 6 4 35 35 H 1.09005 * 109.47117 * 55.00095 * 9 6 4 36 36 H 1.09001 * 109.47292 * 300.00005 * 10 9 6 37 37 H 1.09005 * 109.47124 * 59.99981 * 10 9 6 38 38 H 0.97004 * 119.99137 * 179.97438 * 14 13 11 39 39 H 0.96996 * 120.00136 * 359.97438 * 20 19 2 40 40 H 0.97005 * 120.00031 * 180.02562 * 20 19 2 41 41 H 1.08002 * 119.99692 * 359.97438 * 23 22 2 42 42 H 1.08000 * 120.00138 * 180.22962 * 24 23 22 43 43 H 1.08001 * 119.99818 * 179.72435 * 25 24 23 44 44 H 1.08004 * 119.99780 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00304 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.7188 2.2019 1.0264 5 8 1.0448 1.7969 1.9498 6 6 2.2206 3.6228 1.0262 7 1 2.1473 4.0339 0.0194 8 7 1.4067 4.4297 1.9452 9 6 3.6809 3.6480 1.4821 10 6 4.2278 5.0719 1.3632 11 6 5.6663 5.0966 1.8117 12 1 6.1427 4.1877 2.1483 13 6 6.3740 6.2798 1.7933 14 7 7.6295 6.3012 2.1842 15 14 5.5498 7.8521 1.2118 16 1 4.9177 8.5366 2.3683 17 1 6.5657 8.7470 0.6017 18 1 4.5108 7.5226 0.2034 19 6 2.0323 -0.7104 1.2304 20 7 3.2543 -0.4246 1.7219 21 8 1.3369 -1.5394 1.7784 22 6 2.0322 -0.7103 -1.2305 23 6 2.3480 0.0127 -2.3656 24 6 2.8134 -0.6383 -3.4927 25 6 2.9530 -2.0136 -3.4882 26 6 2.6323 -2.7372 -2.3549 27 6 2.1719 -2.0856 -1.2261 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.5571 1.7052 -0.7386 32 1 1.4582 4.0685 2.8859 33 1 1.6818 5.4000 1.9148 34 1 3.7433 3.3203 2.5198 35 1 4.2693 2.9792 0.8539 36 1 4.1655 5.3997 0.3255 37 1 3.6395 5.7408 1.9915 38 1 8.1274 7.1336 2.1709 39 1 3.8106 0.2381 1.2834 40 1 3.5778 -0.8822 2.5137 41 1 2.2343 1.0867 -2.3706 42 1 3.0636 -0.0730 -4.3782 43 1 3.3124 -2.5227 -4.3703 44 1 2.7410 -3.8117 -2.3516 45 1 1.9206 -2.6511 -0.3409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424110892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:20 Heat of formation + Delta-G solvation = -52.982074 kcal Electronic energy + Delta-G solvation = -27457.486477 eV Core-core repulsion = 23667.417460 eV Total energy + Delta-G solvation = -3790.069017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26690 -39.30409 -38.71720 -36.03074 -35.32719 -33.53476 -32.88732 -32.01163 -31.14871 -30.40519 -29.55964 -26.94477 -25.08777 -23.90844 -23.04163 -22.23877 -20.81722 -20.12677 -19.64119 -18.14214 -17.73185 -17.17774 -16.89086 -16.61612 -15.91395 -15.09759 -14.98421 -14.82984 -14.67787 -14.42631 -14.30435 -14.13046 -14.04183 -13.61106 -13.47158 -13.04266 -13.00573 -12.73460 -12.56209 -12.26119 -12.10748 -11.98682 -11.53090 -11.40690 -11.38832 -11.05895 -10.41932 -10.30547 -10.18458 -9.93981 -9.67669 -9.52302 -9.39187 -9.38825 -9.25156 -8.95878 -8.68411 -8.41687 -6.18056 -4.18122 0.93991 1.06704 2.45694 2.66347 2.96583 3.20311 3.29068 3.29244 3.35939 3.51287 4.21254 4.31827 4.54936 4.68091 4.74077 4.77370 4.83447 4.93716 4.99891 5.14894 5.15695 5.26094 5.33898 5.46794 5.54967 5.61062 5.65466 5.73345 6.00070 6.03629 6.11487 6.18417 6.19328 6.21575 6.30176 6.54739 6.62433 6.74081 6.98693 7.12870 7.17544 7.28548 7.43233 7.59262 7.69070 8.17508 8.22950 8.36947 8.85133 9.43106 10.94992 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.003466 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.305942 B = 8075.770570 C = 8792.053619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.206 3.794 3 N -0.732 5.732 4 C 0.525 3.475 5 O -0.516 6.516 6 C 0.073 3.927 7 H 0.098 0.902 8 N -0.830 5.830 9 C -0.130 4.130 10 C -0.010 4.010 11 C -0.525 4.525 12 H 0.071 0.929 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.535 3.465 20 N -0.843 5.843 21 O -0.539 6.539 22 C -0.087 4.087 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.105 4.105 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.405 0.595 32 H 0.349 0.651 33 H 0.352 0.648 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.402 0.598 40 H 0.402 0.598 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.134 -14.205 -11.777 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.116 3.884 3 N -0.391 5.391 4 C 0.312 3.688 5 O -0.389 6.389 6 C -0.042 4.042 7 H 0.116 0.884 8 N -0.362 5.362 9 C -0.170 4.170 10 C -0.048 4.048 11 C -0.563 4.563 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.538 5.538 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C 0.318 3.682 20 N -0.406 5.406 21 O -0.414 6.414 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.124 4.124 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.243 0.757 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.231 0.769 40 H 0.233 0.767 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.690 -15.087 -11.276 22.168 hybrid contribution 1.491 1.466 -0.070 2.092 sum -10.199 -13.620 -11.345 20.451 Atomic orbital electron populations 1.22038 0.90534 1.03784 1.03936 1.19248 0.96487 0.81565 0.91115 1.46386 1.56529 1.10749 1.25411 1.20940 0.78938 0.87745 0.81225 1.90691 1.36983 1.76258 1.35012 1.21516 0.93397 0.89818 0.99498 0.88381 1.58717 1.58194 1.06498 1.12769 1.22226 0.91985 1.01378 1.01388 1.19568 0.97168 0.91261 0.96765 1.21035 0.94435 0.96564 1.44287 0.91077 1.25041 0.94707 0.99044 0.94589 1.69909 1.08955 1.27401 1.47502 0.86777 0.79507 0.83413 0.79550 1.20212 1.21309 1.18974 1.20308 0.81247 0.81852 0.84784 1.43741 1.18391 1.45384 1.33069 1.90723 1.56169 1.34557 1.59987 1.19481 1.01171 0.94148 0.94014 1.20927 0.99243 1.00023 0.92576 1.21154 0.99092 0.94685 0.98167 1.21245 0.99493 0.94340 0.98293 1.21150 0.98931 1.00136 0.92951 1.21111 0.98590 0.93462 0.99216 0.90675 0.89541 0.91613 0.75719 0.83758 0.83345 0.91942 0.91962 0.96306 0.97017 0.92579 0.76884 0.76666 0.85511 0.85461 0.85791 0.85669 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.94 37.15 0.29 -1.55 16 2 C 0.21 2.46 0.83 -134.13 -0.11 2.35 16 3 N -0.73 -8.20 4.18 -49.77 -0.21 -8.41 16 4 C 0.52 7.47 6.27 -10.98 -0.07 7.40 16 5 O -0.52 -9.03 13.49 5.56 0.07 -8.95 16 6 C 0.07 1.05 3.21 -68.86 -0.22 0.83 16 7 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 8 N -0.83 -12.37 8.94 -5.65 -0.05 -12.42 16 9 C -0.13 -2.18 4.78 -26.73 -0.13 -2.31 16 10 C -0.01 -0.21 3.81 -27.89 -0.11 -0.32 16 11 C -0.53 -13.85 9.66 -34.44 -0.33 -14.18 16 12 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 13 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 14 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 15 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 19 C 0.54 7.55 4.32 -10.99 -0.05 7.50 16 20 N -0.84 -10.10 8.56 31.22 0.27 -9.83 16 21 O -0.54 -9.26 16.34 5.55 0.09 -9.17 16 22 C -0.09 -0.89 4.80 -104.62 -0.50 -1.40 16 23 C -0.11 -0.94 9.03 -39.58 -0.36 -1.30 16 24 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 26 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 27 C -0.11 -1.08 9.15 -39.58 -0.36 -1.44 16 28 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 29 H 0.09 1.33 6.28 -51.93 -0.33 1.00 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.41 3.63 6.37 -40.82 -0.26 3.37 16 32 H 0.35 5.39 8.58 -39.29 -0.34 5.05 16 33 H 0.35 5.09 7.55 -39.29 -0.30 4.79 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.40 4.39 8.16 -40.82 -0.33 4.06 16 40 H 0.40 4.42 8.93 -40.82 -0.36 4.05 16 41 H 0.13 0.90 6.42 -52.49 -0.34 0.56 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.13 1.44 6.76 -52.49 -0.35 1.08 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -33.41 366.56 -7.69 -41.11 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -6.26 Total: 18.75 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.23 Total: -6.55 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.78 Total: -56.43 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.17 Total: -18.12 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.41 -7.69 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424110892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.875 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds