Wall clock time and date at job start Fri Apr 10 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46498 * 109.47073 * 2 1 4 4 C 1.34784 * 120.00057 * 61.56408 * 3 2 1 5 5 O 1.21280 * 119.99521 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00243 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47035 * 39.99037 * 6 4 3 8 8 N 1.46902 * 109.47236 * 159.99563 * 6 4 3 9 9 C 1.53003 * 109.46867 * 279.99524 * 6 4 3 10 10 C 1.52996 * 109.47160 * 175.00118 * 9 6 4 11 11 C 1.50697 * 109.47082 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99756 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99916 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47108 * 90.00148 * 15 13 11 17 17 H 1.48496 * 109.47216 * 210.00420 * 15 13 11 18 18 H 1.48501 * 109.47068 * 330.00683 * 15 13 11 19 19 C 1.50699 * 109.47540 * 120.00120 * 2 1 3 20 20 N 1.34772 * 120.00345 * 204.99925 * 19 2 1 21 21 O 1.21286 * 119.99452 * 25.00003 * 19 2 1 22 22 C 1.50701 * 109.47106 * 240.00316 * 2 1 3 23 23 C 1.38234 * 120.00187 * 94.33672 * 22 2 1 24 24 C 1.38234 * 120.00250 * 179.76542 * 23 22 2 25 25 C 1.38234 * 119.99717 * 0.50961 * 24 23 22 26 26 C 1.38233 * 119.99946 * 359.74211 * 25 24 23 27 27 C 1.38234 * 119.99919 * 274.61177 * 22 2 1 28 28 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47449 * 299.99904 * 1 2 3 30 30 H 1.09005 * 109.47666 * 59.99737 * 1 2 3 31 31 H 0.97000 * 120.00438 * 241.55906 * 3 2 1 32 32 H 1.00902 * 110.99691 * 59.99524 * 8 6 4 33 33 H 1.00898 * 111.00088 * 183.94918 * 8 6 4 34 34 H 1.09001 * 109.47022 * 295.00288 * 9 6 4 35 35 H 1.09005 * 109.47117 * 55.00095 * 9 6 4 36 36 H 1.09001 * 109.47292 * 300.00005 * 10 9 6 37 37 H 1.09005 * 109.47124 * 59.99981 * 10 9 6 38 38 H 0.97004 * 119.99137 * 179.97438 * 14 13 11 39 39 H 0.96996 * 120.00136 * 359.97438 * 20 19 2 40 40 H 0.97005 * 120.00031 * 180.02562 * 20 19 2 41 41 H 1.08002 * 119.99692 * 359.97438 * 23 22 2 42 42 H 1.08000 * 120.00138 * 180.22962 * 24 23 22 43 43 H 1.08001 * 119.99818 * 179.72435 * 25 24 23 44 44 H 1.08004 * 119.99780 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00304 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.7188 2.2019 1.0264 5 8 1.0448 1.7969 1.9498 6 6 2.2206 3.6228 1.0262 7 1 2.1473 4.0339 0.0194 8 7 1.4067 4.4297 1.9452 9 6 3.6809 3.6480 1.4821 10 6 4.2278 5.0719 1.3632 11 6 5.6663 5.0966 1.8117 12 1 6.1427 4.1877 2.1483 13 6 6.3740 6.2798 1.7933 14 7 7.6295 6.3012 2.1842 15 14 5.5498 7.8521 1.2118 16 1 4.9177 8.5366 2.3683 17 1 6.5657 8.7470 0.6017 18 1 4.5108 7.5226 0.2034 19 6 2.0323 -0.7104 1.2304 20 7 3.2543 -0.4246 1.7219 21 8 1.3369 -1.5394 1.7784 22 6 2.0322 -0.7103 -1.2305 23 6 2.3480 0.0127 -2.3656 24 6 2.8134 -0.6383 -3.4927 25 6 2.9530 -2.0136 -3.4882 26 6 2.6323 -2.7372 -2.3549 27 6 2.1719 -2.0856 -1.2261 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.5571 1.7052 -0.7386 32 1 1.4582 4.0685 2.8859 33 1 1.6818 5.4000 1.9148 34 1 3.7433 3.3203 2.5198 35 1 4.2693 2.9792 0.8539 36 1 4.1655 5.3997 0.3255 37 1 3.6395 5.7408 1.9915 38 1 8.1274 7.1336 2.1709 39 1 3.8106 0.2381 1.2834 40 1 3.5778 -0.8822 2.5137 41 1 2.2343 1.0867 -2.3706 42 1 3.0636 -0.0730 -4.3782 43 1 3.3124 -2.5227 -4.3703 44 1 2.7410 -3.8117 -2.3516 45 1 1.9206 -2.6511 -0.3409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424110892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:20 Heat of formation + Delta-G solvation = -79.904886 kcal Electronic energy + Delta-G solvation = -27458.653938 eV Core-core repulsion = 23667.417460 eV Total energy + Delta-G solvation = -3791.236478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26891 -40.32011 -39.65708 -37.28384 -36.47967 -34.78686 -34.60781 -32.92522 -32.04986 -31.80829 -30.40186 -28.37747 -26.23747 -25.22404 -23.89475 -23.02068 -22.24155 -21.29496 -20.69509 -19.31141 -18.79210 -18.65777 -18.16089 -17.63577 -16.71915 -16.33524 -16.07839 -15.92342 -15.90802 -15.70723 -15.41428 -15.24397 -15.12052 -14.78564 -14.60049 -14.37129 -14.19281 -13.85943 -13.58720 -13.40557 -13.21510 -13.10164 -13.02370 -12.64536 -12.27312 -12.04407 -12.00164 -11.89333 -11.63595 -11.37936 -11.36124 -10.79178 -10.75729 -10.73032 -10.36934 -9.89203 -9.74058 -9.63650 -8.27031 -6.31849 0.26908 0.42761 1.37490 1.40964 1.41927 1.52507 1.53320 1.93181 2.38420 2.41546 2.80333 3.09376 3.36720 3.65482 3.72164 3.74125 3.97447 4.02235 4.09439 4.13056 4.20433 4.27252 4.54719 4.55634 4.60818 4.64695 4.69721 4.76600 4.93761 4.99250 5.06140 5.12800 5.17185 5.39640 5.50065 5.50684 5.51800 5.58326 5.65970 5.73193 6.00809 6.06633 6.24015 6.28143 6.41838 6.50062 6.77258 7.11295 7.16165 7.33164 8.89430 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.003466 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.305942 B = 8075.770570 C = 8792.053619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.212 3.788 3 N -0.713 5.713 4 C 0.527 3.473 5 O -0.550 6.550 6 C 0.082 3.918 7 H 0.125 0.875 8 N -0.831 5.831 9 C -0.119 4.119 10 C -0.007 4.007 11 C -0.530 4.530 12 H 0.030 0.970 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.291 1.291 18 H -0.234 1.234 19 C 0.529 3.471 20 N -0.835 5.835 21 O -0.578 6.578 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.420 0.580 32 H 0.344 0.656 33 H 0.355 0.645 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.408 0.592 40 H 0.406 0.594 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.140 0.860 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -13.283 -14.864 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.122 3.878 3 N -0.372 5.372 4 C 0.314 3.686 5 O -0.426 6.426 6 C -0.033 4.033 7 H 0.143 0.857 8 N -0.363 5.363 9 C -0.159 4.159 10 C -0.045 4.045 11 C -0.568 4.568 12 H 0.048 0.952 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.773 3.227 16 H -0.197 1.197 17 H -0.217 1.217 18 H -0.157 1.157 19 C 0.313 3.687 20 N -0.397 5.397 21 O -0.456 6.456 22 C -0.099 4.099 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.238 0.762 40 H 0.237 0.763 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.158 0.842 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.621 -14.167 -14.404 23.821 hybrid contribution 1.861 1.057 0.901 2.322 sum -10.760 -13.110 -13.503 21.679 Atomic orbital electron populations 1.21972 0.91214 1.03307 1.03385 1.19121 0.95990 0.81561 0.91138 1.46177 1.55803 1.10138 1.25035 1.20927 0.78531 0.87871 0.81233 1.90699 1.38689 1.76772 1.36482 1.21467 0.91246 0.90030 1.00556 0.85719 1.58735 1.58143 1.06792 1.12646 1.22047 0.93940 0.99160 1.00763 1.19510 0.93738 0.93938 0.97291 1.21442 0.97154 0.94987 1.43240 0.95173 1.26042 0.95208 1.03190 0.94962 1.70082 1.11049 1.28423 1.49833 0.85668 0.78922 0.78322 0.79766 1.19750 1.21718 1.15655 1.20757 0.81293 0.81475 0.85202 1.43709 1.17944 1.45095 1.32989 1.90695 1.57277 1.36368 1.61297 1.19340 1.02721 0.94086 0.93788 1.21140 0.98822 1.00880 0.92129 1.21511 0.97976 0.94964 0.98590 1.21600 0.98332 0.94599 0.98619 1.21374 0.98494 1.01123 0.92681 1.21072 0.99973 0.93671 0.99430 0.91222 0.92372 0.89632 0.73988 0.84280 0.82910 0.93819 0.90873 0.94754 0.96149 0.92673 0.76162 0.76281 0.83783 0.82914 0.83263 0.84193 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 7.94 71.98 0.57 -2.98 16 2 C 0.21 4.92 0.83 2.11 0.00 4.92 16 3 N -0.71 -14.61 4.18 -429.77 -1.79 -16.41 16 4 C 0.53 14.20 6.27 87.66 0.55 14.75 16 5 O -0.55 -19.11 13.49 -3.03 -0.04 -19.15 16 6 C 0.08 2.14 3.21 44.17 0.14 2.28 16 7 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 8 N -0.83 -23.03 8.94 -171.80 -1.54 -24.57 16 9 C -0.12 -3.79 4.78 30.59 0.15 -3.65 16 10 C -0.01 -0.29 3.81 29.85 0.11 -0.17 16 11 C -0.53 -27.96 9.66 25.60 0.25 -27.71 16 12 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 13 C 0.00 0.15 5.47 84.66 0.46 0.61 16 14 N -0.95 -57.45 13.96 21.45 0.30 -57.15 16 15 Si 0.95 40.84 27.47 68.60 1.88 42.72 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 19 C 0.53 15.18 4.32 87.66 0.38 15.56 16 20 N -0.84 -20.22 8.56 -173.53 -1.49 -21.70 16 21 O -0.58 -20.75 16.34 -3.05 -0.05 -20.80 16 22 C -0.10 -1.88 4.80 -19.87 -0.10 -1.97 16 23 C -0.11 -1.58 9.03 22.27 0.20 -1.38 16 24 C -0.11 -1.32 10.05 22.27 0.22 -1.10 16 25 C -0.11 -1.36 10.05 22.27 0.22 -1.14 16 26 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.12 -2.45 9.15 22.27 0.20 -2.25 16 28 H 0.07 1.80 7.87 -2.38 -0.02 1.78 16 29 H 0.06 1.82 6.28 -2.39 -0.01 1.80 16 30 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.42 6.18 6.37 -92.71 -0.59 5.58 16 32 H 0.34 10.27 8.58 -89.69 -0.77 9.50 16 33 H 0.36 9.28 7.55 -89.70 -0.68 8.60 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 37 H 0.02 0.78 6.30 -2.38 -0.02 0.76 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.41 8.74 8.16 -92.71 -0.76 7.98 16 40 H 0.41 9.18 8.93 -92.70 -0.83 8.35 16 41 H 0.14 1.46 6.42 -2.91 -0.02 1.44 16 42 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.11 2.56 6.76 -2.91 -0.02 2.54 16 Total: -1.00 -74.80 366.56 -1.73 -76.53 By element: Atomic # 1 Polarization: 48.93 SS G_CDS: -2.60 Total: 46.32 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 3.59 Total: -5.80 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.52 Total: -119.82 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.09 Total: -39.95 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.72 kcal Total: -74.80 -1.73 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424110892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.377 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds