Wall clock time and date at job start Fri Apr 10 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47502 * 2 1 4 4 N 1.46505 * 109.46700 * 119.99605 * 2 1 3 5 5 C 1.34780 * 119.99716 * 154.99649 * 4 2 1 6 6 O 1.21290 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00120 * 179.97438 * 5 4 2 8 8 C 1.50701 * 109.47054 * 180.02562 * 7 5 4 9 9 C 1.38283 * 119.92563 * 90.00085 * 8 7 5 10 10 C 1.38101 * 120.07597 * 180.02562 * 9 8 7 11 11 C 1.38912 * 119.92565 * 0.02562 * 10 9 8 12 12 N 1.39673 * 120.07315 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99605 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46928 * 180.02562 * 13 12 11 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99944 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00055 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99682 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 120.00029 * 21 19 17 24 24 H 1.48505 * 109.46997 * 240.00023 * 21 19 17 25 25 C 1.38914 * 119.84917 * 0.25534 * 11 10 9 26 26 C 1.38106 * 119.92380 * 359.48549 * 25 11 10 27 27 H 1.09007 * 109.47511 * 300.00399 * 1 2 3 28 28 H 1.09000 * 109.47326 * 60.00207 * 1 2 3 29 29 H 1.09000 * 109.47875 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47208 * 239.99445 * 2 1 3 31 31 H 1.08994 * 109.47778 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46661 * 300.00200 * 3 2 1 33 33 H 1.09004 * 109.47366 * 59.99760 * 3 2 1 34 34 H 0.96993 * 120.00216 * 335.00367 * 4 2 1 35 35 H 1.08994 * 109.47054 * 60.00164 * 7 5 4 36 36 H 1.09002 * 109.46870 * 300.00493 * 7 5 4 37 37 H 1.08009 * 119.96048 * 0.04469 * 9 8 7 38 38 H 1.08005 * 120.03673 * 179.97438 * 10 9 8 39 39 H 0.96999 * 120.00315 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.47073 * 299.99891 * 13 12 11 41 41 H 1.09000 * 109.47212 * 59.99974 * 13 12 11 42 42 H 0.96996 * 119.99844 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00016 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.03713 * 179.72784 * 25 11 10 45 45 H 1.07994 * 119.96460 * 180.25714 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 3.2402 -1.2592 1.1945 6 8 3.9357 -1.1988 0.2027 7 6 3.7427 -1.9691 2.4252 8 6 5.1244 -2.5110 2.1636 9 6 6.2341 -1.7337 2.4404 10 6 7.5016 -2.2269 2.2013 11 6 7.6612 -3.5053 1.6816 12 7 8.9418 -4.0070 1.4382 13 6 9.1081 -5.3553 0.8896 14 6 10.5761 -5.6523 0.7232 15 8 11.4022 -4.8195 1.0320 16 7 10.9712 -6.8433 0.2313 17 6 12.3067 -7.1133 0.0794 18 1 13.0422 -6.3718 0.3544 19 6 12.7139 -8.3409 -0.4282 20 7 11.8189 -9.2430 -0.7633 21 14 14.5336 -8.7091 -0.6345 22 1 15.3294 -7.5374 -0.1883 23 1 14.8947 -9.8942 0.1843 24 1 14.8232 -8.9882 -2.0640 25 6 6.5441 -4.2812 1.3993 26 6 5.2795 -3.7838 1.6458 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.4620 -0.7386 1.9895 35 1 3.0702 -2.7910 2.6707 36 1 3.7795 -1.2683 3.2593 37 1 6.1093 -0.7398 2.8443 38 1 8.3679 -1.6191 2.4173 39 1 9.7209 -3.4629 1.6323 40 1 8.6656 -6.0820 1.5710 41 1 8.6124 -5.4170 -0.0793 42 1 10.3106 -7.5091 -0.0160 43 1 12.1032 -10.1002 -1.1173 44 1 6.6645 -5.2738 0.9911 45 1 4.4108 -4.3881 1.4304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425999216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:23 Heat of formation + Delta-G solvation = -60.367162 kcal Electronic energy + Delta-G solvation = -25133.453369 eV Core-core repulsion = 21343.064110 eV Total energy + Delta-G solvation = -3790.389259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18023 -39.16014 -38.21904 -36.27671 -35.18073 -33.99003 -32.34337 -31.41409 -30.99224 -30.63814 -27.94840 -27.61893 -25.79644 -24.30829 -22.56760 -22.05230 -20.91973 -20.34209 -19.37772 -18.06135 -17.39337 -17.20341 -16.55794 -15.84544 -15.51553 -15.31289 -14.92939 -14.74424 -14.57827 -14.41414 -14.06554 -13.94440 -13.56277 -13.38122 -13.24404 -13.11392 -12.89006 -12.73801 -12.56825 -12.18801 -12.03037 -11.85952 -11.72929 -11.62768 -11.37144 -11.28549 -11.14289 -10.68586 -10.40239 -10.31231 -10.04434 -9.66539 -9.59051 -9.34491 -8.68166 -8.60572 -8.09404 -7.04101 -6.51179 -3.92849 1.69727 1.77021 2.55029 2.99307 3.10868 3.22799 3.29694 3.72930 3.75083 4.09516 4.14485 4.43790 4.65083 4.70895 4.85277 4.89055 4.91657 4.97788 5.16156 5.17153 5.22373 5.24369 5.30653 5.36201 5.38159 5.53560 5.62200 5.72667 5.73621 5.87888 5.89281 5.93512 5.97108 6.15077 6.24118 6.25708 6.55973 6.62361 6.84433 7.08847 7.29721 7.46893 7.63168 7.94945 8.11737 8.16708 8.46768 9.05922 9.40263 9.88786 10.65947 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.001826 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.087118 B =15331.830353 C =15585.596130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.735 5.735 5 C 0.510 3.490 6 O -0.523 6.523 7 C -0.087 4.087 8 C -0.145 4.145 9 C -0.054 4.054 10 C -0.200 4.200 11 C 0.231 3.769 12 N -0.725 5.725 13 C 0.113 3.887 14 C 0.430 3.570 15 O -0.595 6.595 16 N -0.552 5.552 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.203 4.203 26 C -0.053 4.053 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.398 0.602 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.395 0.605 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.589 14.709 5.912 29.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.222 4.222 4 N -0.389 5.389 5 C 0.296 3.704 6 O -0.398 6.398 7 C -0.127 4.127 8 C -0.148 4.148 9 C -0.073 4.073 10 C -0.222 4.222 11 C 0.125 3.875 12 N -0.355 5.355 13 C -0.016 4.016 14 C 0.216 3.784 15 O -0.481 6.481 16 N -0.187 5.187 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.226 4.226 26 C -0.072 4.072 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.249 0.751 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.229 0.771 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.430 14.885 5.200 28.241 hybrid contribution 0.438 -0.535 0.086 0.697 sum -22.992 14.349 5.286 27.613 Atomic orbital electron populations 1.22072 0.94280 1.02572 1.02823 1.20902 0.93772 0.93065 0.89229 1.22182 1.02303 0.95835 1.01874 1.46195 1.18296 1.57752 1.16641 1.20911 0.80878 0.78373 0.90217 1.90749 1.55677 1.58423 1.34913 1.20487 0.95720 1.00597 0.95911 1.18816 0.92784 0.95523 1.07638 1.20547 0.91531 0.97959 0.97275 1.20497 0.97625 0.95449 1.08675 1.17889 0.85295 0.92218 0.92065 1.44541 1.05038 1.16275 1.69631 1.20936 0.96523 0.84993 0.99110 1.19767 0.89268 0.84261 0.85142 1.90504 1.53784 1.47491 1.56284 1.41804 1.08705 1.13342 1.54835 1.19784 0.82843 1.00567 1.40135 0.87679 1.25315 1.00399 0.95382 0.96662 1.69620 1.34048 1.07010 1.42988 0.85758 0.81810 0.78572 0.77956 1.19146 1.20613 1.20616 1.20610 0.91454 1.01070 1.09450 1.20596 0.96322 0.94559 0.95739 0.92151 0.91029 0.91993 0.89511 0.91977 0.91777 0.92622 0.76871 0.88598 0.88644 0.86880 0.86348 0.75117 0.90685 0.90680 0.77137 0.91687 0.86092 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.38 37.15 0.35 -0.34 16 2 C 0.13 0.95 3.18 -67.93 -0.22 0.74 16 3 C -0.16 -1.15 9.48 37.16 0.35 -0.79 16 4 N -0.74 -5.10 5.08 -53.81 -0.27 -5.38 16 5 C 0.51 5.26 7.79 -10.98 -0.09 5.18 16 6 O -0.52 -7.98 15.70 5.55 0.09 -7.89 16 7 C -0.09 -0.73 5.83 -29.03 -0.17 -0.90 16 8 C -0.14 -1.77 4.38 -104.59 -0.46 -2.23 16 9 C -0.05 -0.70 9.69 -39.62 -0.38 -1.08 16 10 C -0.20 -2.92 9.90 -39.38 -0.39 -3.30 16 11 C 0.23 3.71 6.65 -83.79 -0.56 3.15 16 12 N -0.72 -12.79 5.70 -59.80 -0.34 -13.13 16 13 C 0.11 2.05 5.39 -5.19 -0.03 2.03 16 14 C 0.43 10.09 7.85 -10.99 -0.09 10.01 16 15 O -0.59 -15.88 15.24 5.54 0.08 -15.79 16 16 N -0.55 -13.83 5.29 -10.96 -0.06 -13.89 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 21 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.20 -3.01 9.31 -39.38 -0.37 -3.37 16 26 C -0.05 -0.70 9.69 -39.61 -0.38 -1.08 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 1.53 8.60 -40.82 -0.35 1.18 16 35 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.41 7.65 7.45 -40.82 -0.30 7.34 16 40 H 0.08 1.24 7.96 -51.93 -0.41 0.82 16 41 H 0.08 1.27 7.94 -51.93 -0.41 0.86 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.12 1.69 6.73 -52.49 -0.35 1.33 16 45 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -33.64 383.46 -8.39 -42.03 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -6.71 Total: 15.79 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.66 Total: 0.02 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.05 Total: -55.70 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.64 -8.39 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425999216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.337 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds