Wall clock time and date at job start Fri Apr 10 2020 18:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47502 * 2 1 4 4 N 1.46505 * 109.46700 * 119.99605 * 2 1 3 5 5 C 1.34780 * 119.99716 * 154.99649 * 4 2 1 6 6 O 1.21290 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00120 * 179.97438 * 5 4 2 8 8 C 1.50701 * 109.47054 * 180.02562 * 7 5 4 9 9 C 1.38283 * 119.92563 * 90.00085 * 8 7 5 10 10 C 1.38101 * 120.07597 * 180.02562 * 9 8 7 11 11 C 1.38912 * 119.92565 * 0.02562 * 10 9 8 12 12 N 1.39673 * 120.07315 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99605 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46928 * 180.02562 * 13 12 11 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99944 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00055 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99682 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 120.00029 * 21 19 17 24 24 H 1.48505 * 109.46997 * 240.00023 * 21 19 17 25 25 C 1.38914 * 119.84917 * 0.25534 * 11 10 9 26 26 C 1.38106 * 119.92380 * 359.48549 * 25 11 10 27 27 H 1.09007 * 109.47511 * 300.00399 * 1 2 3 28 28 H 1.09000 * 109.47326 * 60.00207 * 1 2 3 29 29 H 1.09000 * 109.47875 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47208 * 239.99445 * 2 1 3 31 31 H 1.08994 * 109.47778 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46661 * 300.00200 * 3 2 1 33 33 H 1.09004 * 109.47366 * 59.99760 * 3 2 1 34 34 H 0.96993 * 120.00216 * 335.00367 * 4 2 1 35 35 H 1.08994 * 109.47054 * 60.00164 * 7 5 4 36 36 H 1.09002 * 109.46870 * 300.00493 * 7 5 4 37 37 H 1.08009 * 119.96048 * 0.04469 * 9 8 7 38 38 H 1.08005 * 120.03673 * 179.97438 * 10 9 8 39 39 H 0.96999 * 120.00315 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.47073 * 299.99891 * 13 12 11 41 41 H 1.09000 * 109.47212 * 59.99974 * 13 12 11 42 42 H 0.96996 * 119.99844 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00016 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.03713 * 179.72784 * 25 11 10 45 45 H 1.07994 * 119.96460 * 180.25714 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 3.2402 -1.2592 1.1945 6 8 3.9357 -1.1988 0.2027 7 6 3.7427 -1.9691 2.4252 8 6 5.1244 -2.5110 2.1636 9 6 6.2341 -1.7337 2.4404 10 6 7.5016 -2.2269 2.2013 11 6 7.6612 -3.5053 1.6816 12 7 8.9418 -4.0070 1.4382 13 6 9.1081 -5.3553 0.8896 14 6 10.5761 -5.6523 0.7232 15 8 11.4022 -4.8195 1.0320 16 7 10.9712 -6.8433 0.2313 17 6 12.3067 -7.1133 0.0794 18 1 13.0422 -6.3718 0.3544 19 6 12.7139 -8.3409 -0.4282 20 7 11.8189 -9.2430 -0.7633 21 14 14.5336 -8.7091 -0.6345 22 1 15.3294 -7.5374 -0.1883 23 1 14.8947 -9.8942 0.1843 24 1 14.8232 -8.9882 -2.0640 25 6 6.5441 -4.2812 1.3993 26 6 5.2795 -3.7838 1.6458 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.4620 -0.7386 1.9895 35 1 3.0702 -2.7910 2.6707 36 1 3.7795 -1.2683 3.2593 37 1 6.1093 -0.7398 2.8443 38 1 8.3679 -1.6191 2.4173 39 1 9.7209 -3.4629 1.6323 40 1 8.6656 -6.0820 1.5710 41 1 8.6124 -5.4170 -0.0793 42 1 10.3106 -7.5091 -0.0160 43 1 12.1032 -10.1002 -1.1173 44 1 6.6645 -5.2738 0.9911 45 1 4.4108 -4.3881 1.4304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425999216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:22 Heat of formation + Delta-G solvation = -84.266236 kcal Electronic energy + Delta-G solvation = -25134.489710 eV Core-core repulsion = 21343.064110 eV Total energy + Delta-G solvation = -3791.425600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05273 -40.50095 -39.73619 -37.05215 -36.48341 -35.86514 -33.44257 -33.14424 -31.95766 -31.64191 -29.27213 -28.07296 -27.18859 -25.93192 -23.66312 -22.87113 -21.74064 -21.28376 -21.06383 -20.03890 -18.76135 -17.96346 -17.39412 -17.18033 -16.93288 -16.39794 -16.36823 -16.19229 -15.94393 -15.56091 -15.12568 -14.86812 -14.82591 -14.50396 -14.34900 -14.22303 -13.86280 -13.80603 -13.55899 -13.27319 -13.12784 -13.04769 -12.91295 -12.73356 -12.47898 -12.27817 -12.25761 -12.13401 -11.87647 -11.70691 -11.60771 -11.06287 -10.63213 -10.56656 -10.11739 -10.02070 -9.74225 -8.53714 -8.23863 -6.03765 0.62957 0.71574 1.33031 1.40518 1.54640 1.79104 1.89390 2.20231 2.34941 2.45424 3.06954 3.13563 3.15735 3.88656 3.96783 4.00442 4.16130 4.17283 4.20625 4.29888 4.36044 4.38049 4.46375 4.46773 4.61013 4.72427 4.75879 4.79381 4.86300 4.95217 4.97217 5.08298 5.20234 5.28997 5.34666 5.35406 5.47557 5.54820 5.65650 5.82692 5.86820 6.05076 6.40774 6.50290 6.71446 6.80305 7.02092 7.42344 7.43844 7.94498 8.63429 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.001826 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.087118 B =15331.830353 C =15585.596130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.718 5.718 5 C 0.508 3.492 6 O -0.582 6.582 7 C -0.083 4.083 8 C -0.140 4.140 9 C -0.062 4.062 10 C -0.212 4.212 11 C 0.205 3.795 12 N -0.737 5.737 13 C 0.130 3.870 14 C 0.429 3.571 15 O -0.630 6.630 16 N -0.559 5.559 17 C -0.340 4.340 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.914 5.914 21 Si 0.997 3.003 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.270 1.270 25 C -0.215 4.215 26 C -0.062 4.062 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.402 0.598 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.400 0.600 43 H 0.280 0.720 44 H 0.125 0.875 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.257 14.991 6.888 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.371 5.371 5 C 0.296 3.704 6 O -0.461 6.461 7 C -0.122 4.122 8 C -0.142 4.142 9 C -0.080 4.080 10 C -0.235 4.235 11 C 0.101 3.899 12 N -0.368 5.368 13 C 0.002 3.998 14 C 0.217 3.783 15 O -0.518 6.518 16 N -0.195 5.195 17 C -0.469 4.469 18 H 0.099 0.901 19 C -0.210 4.210 20 N -0.554 5.554 21 Si 0.820 3.180 22 H -0.198 1.198 23 H -0.193 1.193 24 H -0.195 1.195 25 C -0.238 4.238 26 C -0.080 4.080 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.254 0.746 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.239 0.761 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.234 0.766 43 H 0.090 0.910 44 H 0.143 0.857 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.203 15.169 6.209 30.907 hybrid contribution 1.112 -0.518 -0.193 1.242 sum -25.091 14.651 6.016 29.672 Atomic orbital electron populations 1.22009 0.91655 1.03127 1.04058 1.20945 0.95710 0.92590 0.88165 1.22142 1.00256 0.96155 1.03214 1.46065 1.17434 1.56292 1.17352 1.21243 0.81220 0.78064 0.89921 1.90740 1.57446 1.60864 1.37069 1.20576 0.93782 1.02106 0.95775 1.19285 0.94653 0.94955 1.05352 1.20896 0.91075 0.99063 0.96992 1.20711 0.98740 0.95206 1.08821 1.18102 0.84791 0.93195 0.93809 1.44478 1.05501 1.15883 1.70988 1.20782 0.92390 0.86129 1.00519 1.20646 0.91336 0.83124 0.83233 1.90473 1.55641 1.48427 1.57305 1.41836 1.08129 1.14088 1.55471 1.19747 0.83729 1.01068 1.42358 0.90055 1.26103 1.04619 0.94644 0.95622 1.69674 1.35705 1.07338 1.42731 0.84822 0.76561 0.78254 0.78383 1.19788 1.19348 1.19503 1.20819 0.91936 1.01334 1.09671 1.20949 0.96370 0.95384 0.95340 0.90342 0.90390 0.91771 0.92477 0.95025 0.90831 0.90939 0.74631 0.85510 0.85572 0.84601 0.86184 0.76137 0.88670 0.89235 0.76575 0.91005 0.85709 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.38 71.98 0.68 -0.22 16 2 C 0.13 1.66 3.18 44.99 0.14 1.80 16 3 C -0.16 -2.04 9.48 71.98 0.68 -1.36 16 4 N -0.72 -8.20 5.08 -442.53 -2.25 -10.44 16 5 C 0.51 9.50 7.79 87.66 0.68 10.18 16 6 O -0.58 -17.65 15.70 -3.06 -0.05 -17.70 16 7 C -0.08 -1.10 5.83 29.10 0.17 -0.93 16 8 C -0.14 -3.13 4.38 -19.84 -0.09 -3.22 16 9 C -0.06 -1.51 9.69 22.25 0.22 -1.30 16 10 C -0.21 -6.22 9.90 22.40 0.22 -6.00 16 11 C 0.20 6.62 6.65 38.22 0.25 6.87 16 12 N -0.74 -26.70 5.70 -343.11 -1.96 -28.66 16 13 C 0.13 4.79 5.39 85.63 0.46 5.25 16 14 C 0.43 20.75 7.85 87.66 0.69 21.44 16 15 O -0.63 -35.03 15.24 -3.08 -0.05 -35.07 16 16 N -0.56 -28.80 5.29 -306.98 -1.62 -30.42 16 17 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 18 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.91 -48.89 13.05 21.66 0.28 -48.61 16 21 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 C -0.21 -6.25 9.31 22.40 0.21 -6.04 16 26 C -0.06 -1.52 9.69 22.25 0.22 -1.30 16 27 H 0.08 0.21 8.14 -2.38 -0.02 0.20 16 28 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.42 1.62 8.60 -92.71 -0.80 0.82 16 35 H 0.13 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.13 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 39 H 0.40 15.70 7.45 -92.71 -0.69 15.01 16 40 H 0.10 3.11 7.96 -2.38 -0.02 3.09 16 41 H 0.09 3.03 7.94 -2.39 -0.02 3.01 16 42 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 43 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.12 3.40 6.73 -2.91 -0.02 3.38 16 45 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -75.84 383.46 1.01 -74.83 By element: Atomic # 1 Polarization: 45.90 SS G_CDS: -1.19 Total: 44.70 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.81 Total: 6.68 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -5.54 Total: -118.12 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.10 Total: -52.77 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.84 1.01 -74.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425999216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.434 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds