Wall clock time and date at job start Fri Apr 10 2020 18:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 3 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 3 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46497 * 119.99961 * 65.00536 * 15 12 2 17 17 C 1.52998 * 109.46749 * 164.99290 * 16 15 12 18 18 H 1.08998 * 109.46921 * 294.97932 * 17 16 15 19 19 N 1.46846 * 109.46214 * 54.94949 * 17 16 15 20 20 C 1.46849 * 111.19845 * 181.75342 * 19 17 16 21 21 C 1.53038 * 109.52400 * 298.25629 * 20 19 17 22 22 C 1.53117 * 109.27636 * 59.17974 * 21 20 19 23 23 C 1.53037 * 109.46021 * 174.99975 * 17 16 15 24 24 C 1.53001 * 109.50632 * 300.74870 * 23 17 16 25 25 C 1.52999 * 109.50411 * 60.86568 * 23 17 16 26 26 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 27 27 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 28 28 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 29 29 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 30 30 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 31 31 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 32 32 H 0.96996 * 119.99486 * 244.99958 * 15 12 2 33 33 H 1.08999 * 109.47202 * 284.99609 * 16 15 12 34 34 H 1.09000 * 109.47066 * 44.99907 * 16 15 12 35 35 H 1.00890 * 111.00316 * 305.85384 * 19 17 16 36 36 H 1.09002 * 109.45876 * 178.24495 * 20 19 17 37 37 H 1.08989 * 109.45373 * 58.27112 * 20 19 17 38 38 H 1.09002 * 109.50338 * 299.24295 * 21 20 19 39 39 H 1.08993 * 109.50465 * 179.12023 * 21 20 19 40 40 H 1.09003 * 109.52064 * 182.44151 * 22 21 20 41 41 H 1.09005 * 109.52500 * 62.25184 * 22 21 20 42 42 H 1.09008 * 109.46919 * 59.99702 * 24 23 17 43 43 H 1.09001 * 109.47666 * 179.97438 * 24 23 17 44 44 H 1.08999 * 109.46982 * 300.00147 * 24 23 17 45 45 H 1.08996 * 109.46763 * 60.00060 * 25 23 17 46 46 H 1.09006 * 109.47394 * 179.97438 * 25 23 17 47 47 H 1.08993 * 109.47336 * 300.00343 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.1162 3.3897 -2.9007 8 14 3.7094 3.9428 -0.2515 9 1 5.1087 3.5122 -0.0031 10 1 3.6898 5.3867 -0.5981 11 1 2.8972 3.7160 0.9708 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.3945 -2.1768 2.4411 17 6 1.8874 -2.8834 3.7055 18 1 2.3234 -3.8457 3.4373 19 7 2.9030 -2.0533 4.3655 20 6 3.4334 -2.7157 5.5640 21 6 2.3022 -2.9320 6.5717 22 6 1.2113 -3.7938 5.9299 23 6 0.7100 -3.1047 4.6578 24 6 0.0853 -1.7558 5.0199 25 6 -0.3381 -3.9878 3.9776 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5893 31 1 3.5764 4.2251 -3.0769 32 1 3.4386 -1.8952 1.9408 33 1 0.8792 -1.2566 2.7165 34 1 0.7078 -2.8308 1.9037 35 1 3.6458 -1.8139 3.7261 36 1 4.2052 -2.0905 6.0130 37 1 3.8619 -3.6788 5.2868 38 1 1.8822 -1.9683 6.8597 39 1 2.6931 -3.4378 7.4546 40 1 0.3839 -3.9143 6.6292 41 1 1.6212 -4.7717 5.6772 42 1 -0.2683 -1.2641 4.1135 43 1 -0.7535 -1.9140 5.6977 44 1 0.8323 -1.1282 5.5058 45 1 0.1076 -4.9490 3.7218 46 1 -1.1762 -4.1455 4.6565 47 1 -0.6920 -3.4984 3.0703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430392157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:25 Heat of formation + Delta-G solvation = -78.284380 kcal Electronic energy + Delta-G solvation = -26974.043277 eV Core-core repulsion = 23318.321021 eV Total energy + Delta-G solvation = -3655.722256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.16453 -36.68047 -35.64238 -35.24898 -35.21110 -34.26101 -32.36532 -31.48359 -28.38688 -27.47496 -27.27419 -25.92916 -25.15237 -22.55721 -21.92800 -21.52662 -19.19716 -18.37746 -17.42333 -16.93597 -16.87031 -16.33076 -16.05630 -15.45966 -15.16631 -14.72401 -14.36819 -14.21702 -13.90389 -13.70243 -13.48049 -13.23898 -13.03358 -12.70947 -12.54632 -12.38667 -12.28711 -12.22359 -11.91855 -11.73875 -11.69211 -11.53278 -11.42017 -11.35550 -11.26029 -11.18664 -10.79895 -10.65041 -10.48109 -10.43546 -10.32164 -10.21171 -9.54775 -9.34599 -8.64260 -8.57382 -8.10911 -6.06202 -4.05370 1.13967 3.28727 3.34382 3.35249 3.43133 3.84617 4.07918 4.33983 4.40218 4.44932 4.58347 4.80946 4.88463 4.98550 4.99619 5.11170 5.22250 5.24410 5.26867 5.31576 5.42170 5.45549 5.51822 5.53724 5.61893 5.68331 5.73842 5.76453 5.87262 5.93489 5.96854 5.98086 6.02791 6.13337 6.24762 6.34736 6.42787 6.72946 6.78883 6.94745 7.09318 7.17771 7.42103 7.60228 8.51016 8.98711 9.52819 11.07467 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.003996 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.989907 B = 7005.403162 C = 7572.754477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.990 5.990 3 C 0.229 3.771 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.264 1.264 12 S 2.784 3.216 13 O -0.993 6.993 14 O -0.962 6.962 15 N -1.135 6.135 16 C 0.120 3.880 17 C 0.093 3.907 18 H 0.045 0.955 19 N -0.681 5.681 20 C 0.058 3.942 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.056 4.056 24 C -0.139 4.139 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.343 0.657 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -13.594 20.838 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.832 5.832 3 C 0.106 3.894 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.791 3.209 13 O -0.976 6.976 14 O -0.946 6.946 15 N -0.894 5.894 16 C -0.006 4.006 17 C -0.018 4.018 18 H 0.063 0.937 19 N -0.315 5.315 20 C -0.071 4.071 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.057 4.057 24 C -0.196 4.196 25 C -0.207 4.207 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.277 -13.549 20.224 24.908 hybrid contribution 1.322 0.167 0.649 1.482 sum -3.955 -13.382 20.872 25.107 Atomic orbital electron populations 1.21262 0.79663 1.01107 1.01939 1.57366 1.14374 1.22589 1.88861 1.19439 0.90866 0.80622 0.98515 1.21393 1.36888 1.06890 0.91933 0.90477 1.24876 0.95399 0.97189 0.95547 1.69899 1.42741 1.21850 1.18923 0.86908 0.80393 0.79670 0.83064 1.19831 1.21007 1.18891 1.01924 0.73381 0.72866 0.72724 1.93541 1.67567 1.59932 1.76573 1.93649 1.40650 1.84796 1.75519 1.56295 1.14325 1.86391 1.32431 1.21518 0.88201 1.00499 0.90432 1.21637 0.93087 0.94486 0.92568 0.93690 1.60234 1.16941 1.45048 1.09245 1.21911 0.96669 0.96980 0.91526 1.21640 0.95933 1.00836 0.97342 1.21645 0.98418 0.98219 0.96424 1.20542 0.94136 0.96484 0.94515 1.21901 1.00209 0.95948 1.01556 1.21975 0.98394 0.99429 1.00875 0.92703 0.92896 0.91398 0.95306 0.94855 0.92550 0.75987 0.90519 0.90078 0.83671 0.90697 0.95358 0.90688 0.91865 0.91663 0.92355 0.92365 0.93344 0.90960 0.92639 0.92243 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.77 10.33 59.85 0.62 2.39 16 2 N -0.99 -19.80 3.23 -123.06 -0.40 -20.19 16 3 C 0.23 5.37 4.19 -5.20 -0.02 5.35 16 4 C -0.53 -15.27 9.94 -34.44 -0.34 -15.62 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 12 S 2.78 53.44 6.05 -107.50 -0.65 52.79 16 13 O -0.99 -20.36 16.68 -57.17 -0.95 -21.31 16 14 O -0.96 -22.53 17.11 -57.17 -0.98 -23.51 16 15 N -1.13 -15.60 5.93 -10.62 -0.06 -15.66 16 16 C 0.12 1.39 5.23 -4.04 -0.02 1.37 16 17 C 0.09 0.91 1.95 -67.72 -0.13 0.77 16 18 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 19 N -0.68 -6.44 5.78 -106.76 -0.62 -7.05 16 20 C 0.06 0.47 6.55 -3.83 -0.03 0.44 16 21 C -0.12 -0.87 5.74 -26.65 -0.15 -1.02 16 22 C -0.11 -0.81 4.79 -26.61 -0.13 -0.93 16 23 C -0.06 -0.46 0.54 -154.43 -0.08 -0.55 16 24 C -0.14 -1.20 7.67 37.16 0.29 -0.91 16 25 C -0.15 -1.17 8.15 37.16 0.30 -0.86 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 28 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 29 H 0.03 0.68 7.04 -51.93 -0.37 0.31 16 30 H 0.03 0.74 7.01 -51.93 -0.36 0.38 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.41 4.85 6.88 -34.47 -0.24 4.61 16 33 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 34 H 0.08 0.94 6.33 -51.93 -0.33 0.61 16 35 H 0.34 3.23 6.84 -39.30 -0.27 2.97 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.03 0.22 8.14 -51.94 -0.42 -0.20 16 38 H 0.07 0.59 6.58 -51.93 -0.34 0.25 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.53 6.31 -51.92 -0.33 0.20 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.69 6.01 -51.93 -0.31 0.37 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -34.86 366.76 -9.67 -44.53 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.84 Total: 2.93 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 0.20 Total: -7.56 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.30 Total: -69.87 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.93 Total: -44.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 53.44 SS G_CDS: -0.65 Total: 52.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.86 -9.67 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430392157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds