Wall clock time and date at job start Fri Apr 10 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 3 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 3 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46497 * 119.99961 * 65.00536 * 15 12 2 17 17 C 1.52998 * 109.46749 * 164.99290 * 16 15 12 18 18 H 1.08998 * 109.46921 * 294.97932 * 17 16 15 19 19 N 1.46846 * 109.46214 * 54.94949 * 17 16 15 20 20 C 1.46849 * 111.19845 * 181.75342 * 19 17 16 21 21 C 1.53038 * 109.52400 * 298.25629 * 20 19 17 22 22 C 1.53117 * 109.27636 * 59.17974 * 21 20 19 23 23 C 1.53037 * 109.46021 * 174.99975 * 17 16 15 24 24 C 1.53001 * 109.50632 * 300.74870 * 23 17 16 25 25 C 1.52999 * 109.50411 * 60.86568 * 23 17 16 26 26 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 27 27 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 28 28 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 29 29 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 30 30 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 31 31 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 32 32 H 0.96996 * 119.99486 * 244.99958 * 15 12 2 33 33 H 1.08999 * 109.47202 * 284.99609 * 16 15 12 34 34 H 1.09000 * 109.47066 * 44.99907 * 16 15 12 35 35 H 1.00890 * 111.00316 * 305.85384 * 19 17 16 36 36 H 1.09002 * 109.45876 * 178.24495 * 20 19 17 37 37 H 1.08989 * 109.45373 * 58.27112 * 20 19 17 38 38 H 1.09002 * 109.50338 * 299.24295 * 21 20 19 39 39 H 1.08993 * 109.50465 * 179.12023 * 21 20 19 40 40 H 1.09003 * 109.52064 * 182.44151 * 22 21 20 41 41 H 1.09005 * 109.52500 * 62.25184 * 22 21 20 42 42 H 1.09008 * 109.46919 * 59.99702 * 24 23 17 43 43 H 1.09001 * 109.47666 * 179.97438 * 24 23 17 44 44 H 1.08999 * 109.46982 * 300.00147 * 24 23 17 45 45 H 1.08996 * 109.46763 * 60.00060 * 25 23 17 46 46 H 1.09006 * 109.47394 * 179.97438 * 25 23 17 47 47 H 1.08993 * 109.47336 * 300.00343 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.1162 3.3897 -2.9007 8 14 3.7094 3.9428 -0.2515 9 1 5.1087 3.5122 -0.0031 10 1 3.6898 5.3867 -0.5981 11 1 2.8972 3.7160 0.9708 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.3945 -2.1768 2.4411 17 6 1.8874 -2.8834 3.7055 18 1 2.3234 -3.8457 3.4373 19 7 2.9030 -2.0533 4.3655 20 6 3.4334 -2.7157 5.5640 21 6 2.3022 -2.9320 6.5717 22 6 1.2113 -3.7938 5.9299 23 6 0.7100 -3.1047 4.6578 24 6 0.0853 -1.7558 5.0199 25 6 -0.3381 -3.9878 3.9776 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5893 31 1 3.5764 4.2251 -3.0769 32 1 3.4386 -1.8952 1.9408 33 1 0.8792 -1.2566 2.7165 34 1 0.7078 -2.8308 1.9037 35 1 3.6458 -1.8139 3.7261 36 1 4.2052 -2.0905 6.0130 37 1 3.8619 -3.6788 5.2868 38 1 1.8822 -1.9683 6.8597 39 1 2.6931 -3.4378 7.4546 40 1 0.3839 -3.9143 6.6292 41 1 1.6212 -4.7717 5.6772 42 1 -0.2683 -1.2641 4.1135 43 1 -0.7535 -1.9140 5.6977 44 1 0.8323 -1.1282 5.5058 45 1 0.1076 -4.9490 3.7218 46 1 -1.1762 -4.1455 4.6565 47 1 -0.6920 -3.4984 3.0703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430392157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:24 Heat of formation + Delta-G solvation = -106.491403 kcal Electronic energy + Delta-G solvation = -26975.266425 eV Core-core repulsion = 23318.321021 eV Total energy + Delta-G solvation = -3656.945404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85684 -38.33174 -37.29625 -36.89218 -36.25187 -34.90477 -34.49726 -32.26636 -30.27457 -28.11072 -28.05242 -26.82827 -26.58729 -23.84662 -23.32125 -22.18409 -20.54370 -19.27767 -19.07027 -18.64932 -18.27456 -17.63765 -17.07968 -16.62181 -16.23641 -16.00703 -15.56340 -15.22908 -15.04314 -14.66401 -14.52551 -14.41601 -14.24891 -14.14306 -13.98853 -13.55422 -13.36630 -13.20381 -13.15907 -13.13167 -13.00988 -12.83484 -12.71849 -12.52908 -12.35548 -12.24649 -12.18680 -11.97557 -11.81737 -11.69846 -11.41693 -11.10492 -10.99627 -10.77076 -10.45670 -9.79316 -9.34464 -8.27777 -6.33785 -0.38401 1.38750 1.42656 1.51284 2.00368 2.37051 2.60425 3.06176 3.13613 3.41861 3.63363 3.81591 3.94945 3.98564 4.12441 4.23545 4.32203 4.40727 4.49273 4.55040 4.64113 4.67331 4.73837 4.77550 4.83644 4.85821 4.91393 4.94917 4.99889 5.08121 5.08504 5.14814 5.19491 5.25988 5.33716 5.36904 5.39723 5.49381 5.50731 5.69923 5.71273 6.02158 6.12265 6.31929 6.42831 6.69220 7.29251 8.90021 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.003996 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.989907 B = 7005.403162 C = 7572.754477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.997 5.997 3 C 0.236 3.764 4 C -0.545 4.545 5 H 0.025 0.975 6 C 0.006 3.994 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.227 1.227 12 S 2.799 3.201 13 O -1.010 7.010 14 O -1.011 7.011 15 N -1.115 6.115 16 C 0.113 3.887 17 C 0.098 3.902 18 H 0.042 0.958 19 N -0.687 5.687 20 C 0.056 3.944 21 C -0.117 4.117 22 C -0.107 4.107 23 C -0.054 4.054 24 C -0.137 4.137 25 C -0.150 4.150 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.418 0.582 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.341 0.659 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -13.783 24.543 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.838 5.838 3 C 0.111 3.889 4 C -0.584 4.584 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.149 1.149 12 S 2.807 3.193 13 O -0.993 6.993 14 O -0.995 6.995 15 N -0.879 5.879 16 C -0.013 4.013 17 C -0.014 4.014 18 H 0.060 0.940 19 N -0.321 5.321 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.145 4.145 23 C -0.055 4.055 24 C -0.194 4.194 25 C -0.208 4.208 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.725 -13.767 23.942 28.205 hybrid contribution 1.391 0.113 -0.547 1.499 sum -4.334 -13.654 23.395 27.432 Atomic orbital electron populations 1.21520 0.77806 1.03875 1.01647 1.57300 1.15737 1.21500 1.89294 1.19235 0.92068 0.82377 0.95241 1.21742 1.36458 1.06708 0.93540 0.95628 1.25966 0.95765 0.98621 0.98822 1.70080 1.44276 1.22758 1.21925 0.85750 0.79828 0.77495 0.80157 1.19432 1.20552 1.14948 1.01211 0.72056 0.72513 0.73567 1.93512 1.67777 1.60249 1.77763 1.93579 1.42954 1.85402 1.77528 1.55752 1.15814 1.85595 1.30768 1.21786 0.87394 1.01264 0.90811 1.21609 0.93811 0.93989 0.91976 0.93983 1.60279 1.16968 1.45264 1.09570 1.21985 0.97145 0.97030 0.91101 1.21632 0.95613 1.00719 0.97546 1.21636 0.98781 0.98053 0.96027 1.20550 0.93622 0.96673 0.94675 1.21875 1.00308 0.95771 1.01449 1.21990 0.98643 0.99241 1.00904 0.94632 0.89570 0.89227 0.94667 0.92408 0.92369 0.74615 0.89687 0.89959 0.83906 0.90112 0.95261 0.91168 0.90583 0.90695 0.92313 0.92861 0.92339 0.91766 0.92638 0.91122 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.08 10.33 127.77 1.32 4.40 16 2 N -1.00 -39.09 3.23 -543.24 -1.75 -40.85 16 3 C 0.24 10.76 4.19 85.64 0.36 11.12 16 4 C -0.55 -32.01 9.94 25.60 0.25 -31.75 16 5 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 6 C 0.01 0.34 5.47 84.66 0.46 0.80 16 7 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 8 Si 0.95 42.82 27.47 68.60 1.88 44.70 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 12 S 2.80 106.57 6.05 -56.49 -0.34 106.23 16 13 O -1.01 -41.19 16.68 -128.00 -2.14 -43.32 16 14 O -1.01 -48.06 17.11 -128.00 -2.19 -50.25 16 15 N -1.11 -28.93 5.93 -187.50 -1.11 -30.05 16 16 C 0.11 2.37 5.23 86.38 0.45 2.83 16 17 C 0.10 1.68 1.95 44.94 0.09 1.76 16 18 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 19 N -0.69 -11.43 5.78 -491.69 -2.84 -14.28 16 20 C 0.06 0.77 6.55 86.33 0.57 1.33 16 21 C -0.12 -1.39 5.74 30.65 0.18 -1.21 16 22 C -0.11 -1.28 4.79 30.67 0.15 -1.14 16 23 C -0.05 -0.76 0.54 -52.13 -0.03 -0.79 16 24 C -0.14 -2.00 7.67 71.98 0.55 -1.44 16 25 C -0.15 -1.99 8.15 71.98 0.59 -1.41 16 26 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.09 2.14 7.79 -2.39 -0.02 2.12 16 28 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 29 H 0.04 1.58 7.04 -2.38 -0.02 1.56 16 30 H 0.06 2.38 7.01 -2.39 -0.02 2.36 16 31 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.42 9.31 6.88 -96.75 -0.67 8.65 16 33 H 0.09 1.69 6.16 -2.39 -0.01 1.68 16 34 H 0.08 1.74 6.33 -2.39 -0.02 1.72 16 35 H 0.34 5.72 6.84 -89.70 -0.61 5.11 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.92 6.58 -2.39 -0.02 0.91 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.05 0.82 6.31 -2.38 -0.02 0.81 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 1.05 6.01 -2.39 -0.01 1.04 16 45 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 0.83 6.57 -2.39 -0.02 0.82 16 Total: -1.00 -77.67 366.76 -3.62 -81.29 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.36 Total: 22.43 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.93 Total: -15.50 kcal Atomic # 7 Polarization: -140.16 SS G_CDS: -5.41 Total: -145.57 kcal Atomic # 8 Polarization: -89.25 SS G_CDS: -4.32 Total: -93.58 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 106.57 SS G_CDS: -0.34 Total: 106.23 kcal Total: -77.67 -3.62 -81.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430392157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.204 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds