Wall clock time and date at job start Fri Apr 10 2020 18:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 H 1.08999 * 109.62615 * 64.34693 * 3 2 1 5 5 C 1.53240 * 109.62404 * 303.76897 * 3 2 1 6 6 N 1.46898 * 109.33770 * 186.45989 * 5 3 2 7 7 C 1.46899 * 111.00287 * 187.24905 * 6 5 3 8 8 C 1.53001 * 109.47650 * 189.99729 * 7 6 5 9 9 C 1.46907 * 111.26992 * 63.10265 * 6 5 3 10 10 C 1.53233 * 109.33680 * 296.89361 * 9 6 5 11 11 N 1.47070 * 109.63250 * 184.73518 * 3 2 1 12 12 S 1.65601 * 120.88092 * 350.62379 * 11 3 2 13 13 O 1.42099 * 106.40206 * 198.71561 * 12 11 3 14 14 O 1.42105 * 106.40132 * 331.62848 * 12 11 3 15 15 N 1.65594 * 107.22387 * 85.17278 * 12 11 3 16 16 C 1.46506 * 120.00022 * 270.00402 * 15 12 11 17 17 C 1.46498 * 120.00086 * 89.99683 * 15 12 11 18 18 C 1.50701 * 109.46916 * 95.00399 * 17 15 12 19 19 H 1.08001 * 119.99997 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00228 * 180.02562 * 18 17 15 21 21 N 1.31523 * 119.99696 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00474 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47243 * 89.99799 * 22 20 18 24 24 H 1.48494 * 109.47221 * 209.99985 * 22 20 18 25 25 H 1.48497 * 109.46873 * 330.00034 * 22 20 18 26 26 H 1.09000 * 109.47152 * 305.96296 * 1 2 3 27 27 H 1.08992 * 109.47228 * 65.96559 * 1 2 3 28 28 H 1.09001 * 109.47115 * 185.96900 * 1 2 3 29 29 H 1.08995 * 109.47637 * 240.00137 * 2 1 3 30 30 H 1.09008 * 109.47426 * 119.99401 * 2 1 3 31 31 H 1.09001 * 109.49017 * 306.41309 * 5 3 2 32 32 H 1.08994 * 109.49904 * 66.47006 * 5 3 2 33 33 H 1.09003 * 109.46964 * 310.00624 * 7 6 5 34 34 H 1.09007 * 109.47054 * 69.99606 * 7 6 5 35 35 H 1.08998 * 109.46968 * 300.00354 * 8 7 6 36 36 H 1.09001 * 109.46751 * 60.00526 * 8 7 6 37 37 H 1.08999 * 109.47325 * 179.97438 * 8 7 6 38 38 H 1.08989 * 109.49412 * 56.85665 * 9 6 5 39 39 H 1.09005 * 109.48845 * 176.90971 * 9 6 5 40 40 H 1.09006 * 109.63386 * 294.11960 * 10 9 6 41 41 H 1.09002 * 109.62836 * 173.53904 * 10 9 6 42 42 H 1.09000 * 109.47200 * 89.99704 * 16 15 12 43 43 H 1.08993 * 109.47069 * 209.99519 * 16 15 12 44 44 H 1.09002 * 109.46701 * 329.99931 * 16 15 12 45 45 H 1.09004 * 109.47453 * 215.00141 * 17 15 12 46 46 H 1.08999 * 109.47443 * 335.00775 * 17 15 12 47 47 H 0.96994 * 119.99938 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7430 1.9359 0.9255 5 6 1.4551 2.1952 -1.1999 6 7 2.0666 3.5283 -1.2829 7 6 1.4115 4.3447 -2.3136 8 6 2.2230 5.6209 -2.5455 9 6 3.5129 3.4372 -1.5241 10 6 4.1819 2.7355 -0.3375 11 7 3.5062 1.4482 -0.1143 12 16 4.3740 0.0434 0.0114 13 8 5.7129 0.4232 0.2984 14 8 3.6164 -0.8230 0.8449 15 7 4.3975 -0.6545 -1.4901 16 6 3.3436 -1.5958 -1.8769 17 6 5.4720 -0.3307 -2.4317 18 6 6.5604 -1.3679 -2.3279 19 1 6.4613 -2.1866 -1.6306 20 6 7.6826 -1.2716 -3.1231 21 7 7.8030 -0.2748 -3.9726 22 14 9.0313 -2.5576 -2.9950 23 1 8.7545 -3.6619 -3.9485 24 1 10.3399 -1.9368 -3.3229 25 1 9.0718 -3.0963 -1.6118 26 1 -0.3633 0.6035 0.8318 27 1 -0.3633 0.4185 -0.9385 28 1 -0.3633 -1.0221 0.1069 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6656 1.6410 -2.1146 32 1 0.3770 2.2962 -1.0756 33 1 1.3522 3.7779 -3.2427 34 1 0.4064 4.6081 -1.9840 35 1 2.2822 6.1877 -1.6163 36 1 3.2280 5.3575 -2.8751 37 1 1.7371 6.2265 -3.3106 38 1 3.6945 2.8657 -2.4342 39 1 3.9269 4.4394 -1.6351 40 1 4.0907 3.3561 0.5540 41 1 5.2347 2.5625 -0.5605 42 1 2.5229 -1.0508 -2.3433 43 1 3.7460 -2.3214 -2.5837 44 1 2.9777 -2.1154 -0.9913 45 1 5.0750 -0.3210 -3.4468 46 1 5.8815 0.6507 -2.1923 47 1 8.5926 -0.2068 -4.5318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451935235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:34 Heat of formation + Delta-G solvation = -46.523022 kcal Electronic energy + Delta-G solvation = -27876.808323 eV Core-core repulsion = 24222.463343 eV Total energy + Delta-G solvation = -3654.344980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.36879 -37.08291 -35.74794 -35.42791 -35.12966 -33.38509 -32.44614 -30.59360 -29.44429 -27.86599 -25.80430 -25.14755 -24.47597 -22.66945 -22.23051 -20.96161 -20.32976 -18.26563 -17.46006 -16.53402 -16.29169 -15.99772 -15.75797 -15.13262 -15.03836 -14.86907 -14.42898 -14.22258 -13.88097 -13.53425 -13.32024 -13.26529 -13.03744 -12.54808 -12.30858 -12.20220 -12.16127 -11.95677 -11.89927 -11.61761 -11.51214 -11.28593 -11.25552 -11.12583 -11.10639 -10.99907 -10.77326 -10.70684 -10.51638 -10.29897 -10.04160 -9.79336 -9.70489 -8.92046 -8.45811 -8.26494 -8.05813 -6.08005 -4.11932 1.21107 3.30488 3.36984 3.41645 3.44421 3.81549 4.07795 4.43644 4.72736 4.80828 4.87930 5.02028 5.05491 5.12603 5.25048 5.27610 5.33270 5.36397 5.39127 5.46068 5.57414 5.60465 5.62445 5.69381 5.76355 5.81541 5.86161 5.89436 5.91214 6.05500 6.09454 6.11944 6.19652 6.29252 6.36097 6.53736 6.65417 6.83779 7.03669 7.06032 7.20804 7.39184 7.59604 7.89694 8.18891 8.90505 9.53440 11.00582 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.005106 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.738466 B = 5482.757888 C = 6464.205685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.203 4.203 3 C 0.168 3.832 4 H 0.078 0.922 5 C 0.047 3.953 6 N -0.537 5.537 7 C 0.051 3.949 8 C -0.157 4.157 9 C 0.034 3.966 10 C 0.127 3.873 11 N -1.010 6.010 12 S 2.780 3.220 13 O -0.964 6.964 14 O -0.992 6.992 15 N -0.996 5.996 16 C 0.093 3.907 17 C 0.260 3.740 18 C -0.528 4.528 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 7.939 3.511 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.242 4.242 3 C 0.062 3.938 4 H 0.096 0.904 5 C -0.082 4.082 6 N -0.262 5.262 7 C -0.076 4.076 8 C -0.215 4.215 9 C -0.095 4.095 10 C 0.002 3.998 11 N -0.849 5.849 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.976 6.976 15 N -0.838 5.838 16 C -0.053 4.053 17 C 0.138 3.862 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.940 7.915 4.603 17.523 hybrid contribution 0.701 -0.809 -1.370 1.738 sum -14.239 7.106 3.233 16.238 Atomic orbital electron populations 1.21668 0.94919 1.01868 1.01363 1.23267 0.97570 0.95577 1.07755 1.20959 0.78735 0.96112 0.98018 0.90360 1.22553 0.98871 0.88826 0.97957 1.61989 1.03408 1.13943 1.46889 1.22066 0.98350 0.94228 0.92975 1.21951 1.00522 0.97083 1.01926 1.22629 0.88074 1.01149 0.97677 1.21464 0.96566 0.83902 0.97914 1.58584 1.15360 1.22506 1.88428 1.02045 0.72527 0.72692 0.73714 1.93603 1.34615 1.83000 1.83605 1.93423 1.71583 1.65828 1.66724 1.57678 1.35178 1.55703 1.35267 1.21461 0.89447 0.93176 1.01249 1.19003 0.82930 0.96444 0.87856 1.21491 1.03123 1.10412 1.21713 0.92194 1.24928 0.98096 0.95919 0.95040 1.69918 1.29146 1.30579 1.23908 0.86513 0.81150 0.81341 0.78580 1.20618 1.21027 1.19669 0.92655 0.93088 0.92324 0.90263 0.84916 0.94190 0.89991 0.94986 0.90897 0.91776 0.91995 0.92336 0.93824 0.89088 0.90957 0.88466 0.94139 0.90405 0.91233 0.94996 0.94694 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.27 37.15 0.34 -1.07 16 2 C -0.20 -2.70 3.98 -26.73 -0.11 -2.81 16 3 C 0.17 2.28 3.21 -67.49 -0.22 2.06 16 4 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.05 0.57 4.21 -3.70 -0.02 0.56 16 6 N -0.54 -6.48 4.78 -234.32 -1.12 -7.60 16 7 C 0.05 0.52 5.99 -3.82 -0.02 0.50 16 8 C -0.16 -1.41 9.16 37.16 0.34 -1.07 16 9 C 0.03 0.45 5.04 -3.70 -0.02 0.43 16 10 C 0.13 1.91 6.55 -3.61 -0.02 1.88 16 11 N -1.01 -16.33 3.39 -106.20 -0.36 -16.69 16 12 S 2.78 56.03 5.60 -107.50 -0.60 55.43 16 13 O -0.96 -23.35 15.74 -57.17 -0.90 -24.25 16 14 O -0.99 -19.89 12.45 -57.17 -0.71 -20.60 16 15 N -1.00 -20.68 3.23 -123.05 -0.40 -21.08 16 16 C 0.09 1.59 8.81 59.85 0.53 2.11 16 17 C 0.26 6.49 5.08 -5.19 -0.03 6.46 16 18 C -0.53 -14.83 9.38 -34.44 -0.32 -15.15 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.46 6.88 -51.93 -0.36 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.10 3.20 -51.93 -0.17 0.94 16 30 H 0.13 2.06 5.29 -52.66 -0.28 1.78 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.83 6.88 -51.93 -0.36 0.48 16 33 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.04 0.65 8.14 -51.94 -0.42 0.23 16 39 H 0.09 1.04 5.73 -51.93 -0.30 0.74 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.61 7.08 -51.93 -0.37 1.25 16 42 H 0.04 0.59 6.85 -51.93 -0.36 0.23 16 43 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 44 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 45 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 46 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.12 361.39 -10.41 -42.53 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.85 Total: -0.31 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 0.36 Total: -4.42 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.14 Total: -70.65 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.61 Total: -44.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.60 Total: 55.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.12 -10.41 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451935235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.993 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds