Wall clock time and date at job start Fri Apr 10 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 N 1.46908 * 109.46930 * 119.99556 * 2 1 3 5 5 C 1.48535 * 110.99833 * 179.73045 * 4 2 1 6 6 C 1.54936 * 103.22755 * 200.28180 * 5 4 2 7 7 C 1.54597 * 102.92067 * 37.41352 * 6 5 4 8 8 H 1.08995 * 110.39683 * 97.00556 * 7 6 5 9 9 N 1.46501 * 110.30830 * 219.13222 * 7 6 5 10 10 C 1.46493 * 120.00379 * 55.71285 * 9 7 6 11 11 S 1.65601 * 119.99700 * 235.71775 * 9 7 6 12 12 O 1.42102 * 106.40357 * 336.45455 * 11 9 7 13 13 O 1.42099 * 106.40363 * 203.53906 * 11 9 7 14 14 N 1.65603 * 107.22331 * 89.99602 * 11 9 7 15 15 C 1.46501 * 119.99781 * 89.99716 * 14 11 9 16 16 C 1.46498 * 120.00162 * 270.00339 * 14 11 9 17 17 C 1.50693 * 109.46945 * 264.99767 * 16 14 11 18 18 H 1.08002 * 120.00299 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99977 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00131 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46874 * 90.00186 * 21 19 17 23 23 H 1.48495 * 109.47433 * 209.99914 * 21 19 17 24 24 H 1.48493 * 109.47394 * 330.00231 * 21 19 17 25 25 C 1.47900 * 110.99684 * 62.33434 * 4 2 1 26 26 H 1.08999 * 109.47557 * 300.00002 * 1 2 3 27 27 H 1.09000 * 109.46719 * 60.00636 * 1 2 3 28 28 H 1.09004 * 109.46641 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47557 * 239.99998 * 2 1 3 30 30 H 1.09000 * 109.47065 * 305.67550 * 3 2 1 31 31 H 1.09007 * 109.46949 * 65.67333 * 3 2 1 32 32 H 1.08999 * 109.46943 * 185.67405 * 3 2 1 33 33 H 1.09004 * 110.66857 * 318.71521 * 5 4 2 34 34 H 1.09001 * 110.66837 * 81.84620 * 5 4 2 35 35 H 1.08998 * 110.72277 * 279.05909 * 6 5 4 36 36 H 1.09000 * 110.72844 * 155.77200 * 6 5 4 37 37 H 1.09002 * 109.47322 * 270.00043 * 10 9 7 38 38 H 1.08997 * 109.47115 * 30.00260 * 10 9 7 39 39 H 1.09003 * 109.47224 * 150.00156 * 10 9 7 40 40 H 1.08996 * 109.47016 * 90.00426 * 15 14 11 41 41 H 1.09002 * 109.47316 * 330.00470 * 15 14 11 42 42 H 1.09000 * 109.46982 * 210.00522 * 15 14 11 43 43 H 1.09005 * 109.47142 * 24.99509 * 16 14 11 44 44 H 1.08993 * 109.47257 * 144.99320 * 16 14 11 45 45 H 0.96994 * 120.00347 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.91982 * 26.49188 * 25 4 2 47 47 H 1.08997 * 109.91527 * 265.19422 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 3.5044 -0.7179 1.2306 6 6 3.8188 -1.8821 2.2034 7 6 2.7216 -2.9185 1.8682 8 1 3.1056 -3.6678 1.1760 9 7 2.2368 -3.5598 3.0929 10 6 1.7152 -2.7422 4.1909 11 16 2.2784 -5.2091 3.2361 12 8 2.2845 -5.7268 1.9127 13 8 1.2932 -5.5531 4.2006 14 7 3.7422 -5.6068 3.9005 15 6 3.8865 -5.6945 5.3558 16 6 4.8929 -5.8707 3.0331 17 6 5.0072 -7.3531 2.7875 18 1 4.2942 -8.0309 3.2333 19 6 6.0219 -7.8442 1.9936 20 7 6.8904 -7.0189 1.4512 21 14 6.1640 -9.6818 1.6898 22 1 5.3796 -10.0459 0.4825 23 1 7.5897 -10.0402 1.4803 24 1 5.6354 -10.4202 2.8647 25 6 1.5918 -2.1082 1.2060 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.5960 1.9848 -0.8348 31 1 1.7619 1.9262 0.9365 32 1 3.1252 1.4442 -0.1016 33 1 3.9065 -0.9259 0.2390 34 1 3.8974 0.2227 1.6167 35 1 3.7347 -1.5528 3.2390 36 1 4.8095 -2.2921 2.0071 37 1 2.5289 -2.4806 4.8674 38 1 1.2715 -1.8322 3.7872 39 1 0.9572 -3.3055 4.7351 40 1 3.6678 -6.7112 5.6819 41 1 3.1917 -5.0027 5.8322 42 1 4.9073 -5.4346 5.6360 43 1 4.7576 -5.3544 2.0827 44 1 5.8017 -5.5113 3.5157 45 1 7.6041 -7.3643 0.8924 46 1 1.4368 -2.4539 0.1840 47 1 0.6719 -2.2155 1.7807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452095462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:45 Heat of formation + Delta-G solvation = -64.412355 kcal Electronic energy + Delta-G solvation = -27039.749123 eV Core-core repulsion = 23384.628403 eV Total energy + Delta-G solvation = -3655.120720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.58609 -36.66409 -36.14029 -35.46770 -35.14599 -33.15776 -32.43454 -29.36731 -28.69757 -27.76450 -27.02637 -25.64790 -24.96343 -22.33208 -22.24667 -20.46869 -20.14160 -18.45042 -17.46247 -16.72220 -16.61887 -16.35717 -15.61778 -15.42464 -14.86808 -14.49277 -14.23062 -13.87798 -13.47626 -13.40071 -13.23074 -13.06406 -12.84066 -12.40723 -12.35077 -12.26779 -12.18784 -12.12163 -12.03092 -11.70682 -11.57430 -11.33618 -11.28322 -11.19001 -11.09331 -11.06540 -10.94742 -10.91004 -10.71343 -10.63323 -10.47127 -10.01778 -9.76995 -8.82402 -8.50417 -8.44339 -8.04188 -6.07193 -4.10801 1.18825 3.32382 3.38122 3.41500 3.46372 3.84423 4.08566 4.44491 4.60702 4.63636 4.78574 4.86461 4.99150 5.16021 5.21395 5.22901 5.28136 5.29118 5.42786 5.49245 5.54017 5.55579 5.64371 5.65653 5.67452 5.75566 5.78434 5.86951 5.97071 5.99478 6.02358 6.07606 6.09035 6.19727 6.30186 6.38376 6.51059 6.81882 6.83078 6.99137 7.20523 7.39276 7.60769 7.90582 8.20195 8.91495 9.54431 11.01314 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.004066 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.290548 B = 6884.662100 C = 7635.238673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 C -0.143 4.143 4 N -0.511 5.511 5 C 0.036 3.964 6 C -0.134 4.134 7 C 0.141 3.859 8 H 0.109 0.891 9 N -1.005 6.005 10 C 0.086 3.914 11 S 2.779 3.221 12 O -0.963 6.963 13 O -0.995 6.995 14 N -0.998 5.998 15 C 0.110 3.890 16 C 0.259 3.741 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.027 3.973 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.263 0.737 46 H 0.053 0.947 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 16.622 1.138 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.201 4.201 4 N -0.236 5.236 5 C -0.092 4.092 6 C -0.173 4.173 7 C 0.034 3.966 8 H 0.127 0.873 9 N -0.843 5.843 10 C -0.059 4.059 11 S 2.788 3.212 12 O -0.947 6.947 13 O -0.979 6.979 14 N -0.840 5.840 15 C -0.037 4.037 16 C 0.137 3.863 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.102 4.102 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.903 16.307 1.234 18.620 hybrid contribution 0.866 -1.175 -0.864 1.696 sum -8.037 15.132 0.370 17.138 Atomic orbital electron populations 1.21843 0.94313 1.02124 1.01946 1.21828 0.95897 0.95332 0.91306 1.21829 1.00879 0.95193 1.02162 1.64871 1.08552 1.12833 1.37367 1.23203 0.88123 0.99229 0.98610 1.22900 0.99010 0.94835 1.00577 1.21711 0.93307 0.95867 0.85764 0.87333 1.58179 1.77006 1.26308 1.22763 1.21460 0.98742 0.96962 0.88780 1.02091 0.73195 0.72532 0.73405 1.93613 1.86647 1.76743 1.37668 1.93516 1.58747 1.82332 1.63309 1.57700 1.29620 1.82935 1.13740 1.21193 1.01649 1.00885 0.79981 1.19034 0.82458 0.96667 0.88107 1.21498 1.12551 0.92495 1.30218 0.92239 1.24919 0.95431 0.98272 0.95334 1.69912 1.16089 1.34542 1.33015 0.86525 0.77108 0.85119 0.78885 1.20411 1.21133 1.19790 1.23251 0.99252 0.87609 1.00118 0.91842 0.92441 0.92581 0.93974 0.92409 0.91776 0.92728 0.93465 0.89909 0.89858 0.89983 0.93294 0.90321 0.90547 0.93216 0.93047 0.91538 0.94714 0.94789 0.92722 0.92906 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.13 37.16 0.34 -0.94 16 2 C 0.07 0.63 2.36 -67.71 -0.16 0.47 16 3 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 4 N -0.51 -5.66 5.11 -222.49 -1.14 -6.80 16 5 C 0.04 0.39 5.45 -1.90 -0.01 0.38 16 6 C -0.13 -1.67 6.65 -24.87 -0.17 -1.84 16 7 C 0.14 2.06 3.37 -66.57 -0.22 1.84 16 8 H 0.11 1.84 7.01 -51.93 -0.36 1.48 16 9 N -1.01 -15.54 3.14 -113.16 -0.36 -15.90 16 10 C 0.09 1.07 9.25 59.84 0.55 1.62 16 11 S 2.78 56.03 6.01 -107.50 -0.65 55.38 16 12 O -0.96 -23.02 15.72 -57.17 -0.90 -23.91 16 13 O -1.00 -20.97 15.81 -57.17 -0.90 -21.88 16 14 N -1.00 -20.87 3.23 -123.06 -0.40 -21.27 16 15 C 0.11 1.91 10.33 59.85 0.62 2.53 16 16 C 0.26 6.45 5.12 -5.20 -0.03 6.42 16 17 C -0.53 -14.89 9.38 -34.44 -0.32 -15.22 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.03 0.35 4.62 -2.75 -0.01 0.33 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16 29 H 0.04 0.43 7.99 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.44 7.25 -51.93 -0.38 0.06 16 33 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 35 H 0.08 0.99 6.84 -51.93 -0.36 0.64 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.54 7.87 -51.93 -0.41 0.13 16 38 H 0.08 0.87 6.97 -51.93 -0.36 0.50 16 39 H 0.08 0.97 7.02 -51.93 -0.36 0.60 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 42 H 0.07 1.07 7.94 -51.93 -0.41 0.65 16 43 H 0.03 0.91 7.61 -51.93 -0.40 0.51 16 44 H 0.03 0.86 7.96 -51.93 -0.41 0.44 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.05 0.67 7.60 -51.93 -0.39 0.28 16 47 H 0.09 1.10 7.11 -51.93 -0.37 0.73 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -32.53 378.13 -10.41 -42.94 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.31 Total: -2.40 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 0.82 Total: -3.55 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.15 Total: -69.14 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.80 Total: -45.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.65 Total: 55.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.53 -10.41 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452095462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.472 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds