Wall clock time and date at job start Fri Apr 10 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 N 1.46908 * 109.46930 * 119.99556 * 2 1 3 5 5 C 1.48535 * 110.99833 * 179.73045 * 4 2 1 6 6 C 1.54936 * 103.22755 * 200.28180 * 5 4 2 7 7 C 1.54597 * 102.92067 * 37.41352 * 6 5 4 8 8 H 1.08995 * 110.39683 * 97.00556 * 7 6 5 9 9 N 1.46501 * 110.30830 * 219.13222 * 7 6 5 10 10 C 1.46493 * 120.00379 * 55.71285 * 9 7 6 11 11 S 1.65601 * 119.99700 * 235.71775 * 9 7 6 12 12 O 1.42102 * 106.40357 * 336.45455 * 11 9 7 13 13 O 1.42099 * 106.40363 * 203.53906 * 11 9 7 14 14 N 1.65603 * 107.22331 * 89.99602 * 11 9 7 15 15 C 1.46501 * 119.99781 * 89.99716 * 14 11 9 16 16 C 1.46498 * 120.00162 * 270.00339 * 14 11 9 17 17 C 1.50693 * 109.46945 * 264.99767 * 16 14 11 18 18 H 1.08002 * 120.00299 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99977 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00131 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00050 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46874 * 90.00186 * 21 19 17 23 23 H 1.48495 * 109.47433 * 209.99914 * 21 19 17 24 24 H 1.48493 * 109.47394 * 330.00231 * 21 19 17 25 25 C 1.47900 * 110.99684 * 62.33434 * 4 2 1 26 26 H 1.08999 * 109.47557 * 300.00002 * 1 2 3 27 27 H 1.09000 * 109.46719 * 60.00636 * 1 2 3 28 28 H 1.09004 * 109.46641 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47557 * 239.99998 * 2 1 3 30 30 H 1.09000 * 109.47065 * 305.67550 * 3 2 1 31 31 H 1.09007 * 109.46949 * 65.67333 * 3 2 1 32 32 H 1.08999 * 109.46943 * 185.67405 * 3 2 1 33 33 H 1.09004 * 110.66857 * 318.71521 * 5 4 2 34 34 H 1.09001 * 110.66837 * 81.84620 * 5 4 2 35 35 H 1.08998 * 110.72277 * 279.05909 * 6 5 4 36 36 H 1.09000 * 110.72844 * 155.77200 * 6 5 4 37 37 H 1.09002 * 109.47322 * 270.00043 * 10 9 7 38 38 H 1.08997 * 109.47115 * 30.00260 * 10 9 7 39 39 H 1.09003 * 109.47224 * 150.00156 * 10 9 7 40 40 H 1.08996 * 109.47016 * 90.00426 * 15 14 11 41 41 H 1.09002 * 109.47316 * 330.00470 * 15 14 11 42 42 H 1.09000 * 109.46982 * 210.00522 * 15 14 11 43 43 H 1.09005 * 109.47142 * 24.99509 * 16 14 11 44 44 H 1.08993 * 109.47257 * 144.99320 * 16 14 11 45 45 H 0.96994 * 120.00347 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.91982 * 26.49188 * 25 4 2 47 47 H 1.08997 * 109.91527 * 265.19422 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 3.5044 -0.7179 1.2306 6 6 3.8188 -1.8821 2.2034 7 6 2.7216 -2.9185 1.8682 8 1 3.1056 -3.6678 1.1760 9 7 2.2368 -3.5598 3.0929 10 6 1.7152 -2.7422 4.1909 11 16 2.2784 -5.2091 3.2361 12 8 2.2845 -5.7268 1.9127 13 8 1.2932 -5.5531 4.2006 14 7 3.7422 -5.6068 3.9005 15 6 3.8865 -5.6945 5.3558 16 6 4.8929 -5.8707 3.0331 17 6 5.0072 -7.3531 2.7875 18 1 4.2942 -8.0309 3.2333 19 6 6.0219 -7.8442 1.9936 20 7 6.8904 -7.0189 1.4512 21 14 6.1640 -9.6818 1.6898 22 1 5.3796 -10.0459 0.4825 23 1 7.5897 -10.0402 1.4803 24 1 5.6354 -10.4202 2.8647 25 6 1.5918 -2.1082 1.2060 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.5960 1.9848 -0.8348 31 1 1.7619 1.9262 0.9365 32 1 3.1252 1.4442 -0.1016 33 1 3.9065 -0.9259 0.2390 34 1 3.8974 0.2227 1.6167 35 1 3.7347 -1.5528 3.2390 36 1 4.8095 -2.2921 2.0071 37 1 2.5289 -2.4806 4.8674 38 1 1.2715 -1.8322 3.7872 39 1 0.9572 -3.3055 4.7351 40 1 3.6678 -6.7112 5.6819 41 1 3.1917 -5.0027 5.8322 42 1 4.9073 -5.4346 5.6360 43 1 4.7576 -5.3544 2.0827 44 1 5.8017 -5.5113 3.5157 45 1 7.6041 -7.3643 0.8924 46 1 1.4368 -2.4539 0.1840 47 1 0.6719 -2.2155 1.7807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452095462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:44 Heat of formation + Delta-G solvation = -88.149073 kcal Electronic energy + Delta-G solvation = -27040.778424 eV Core-core repulsion = 23384.628403 eV Total energy + Delta-G solvation = -3656.150021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57008 -38.36444 -37.23703 -37.16808 -36.86428 -34.51988 -34.10910 -30.27513 -29.78530 -29.56531 -27.82169 -26.93496 -26.48399 -24.22399 -23.19947 -21.59920 -21.01892 -19.85332 -19.10183 -18.40687 -18.34186 -17.65020 -17.04985 -16.60950 -16.36411 -15.84376 -15.30652 -15.10567 -15.01461 -14.87088 -14.30351 -14.10753 -14.04689 -13.93596 -13.79045 -13.57371 -13.33826 -13.27670 -13.09425 -13.06292 -12.98918 -12.90773 -12.69316 -12.67655 -12.49089 -12.42848 -12.20315 -12.12252 -11.95735 -11.87060 -11.76996 -11.71581 -11.62981 -10.61327 -10.04554 -9.78599 -9.41405 -8.22054 -6.33720 -0.39366 1.37299 1.39911 1.49209 1.98886 2.38012 2.53635 2.96320 3.08651 3.33738 3.55127 3.65181 3.97702 4.00286 4.11704 4.14504 4.16559 4.31114 4.39984 4.45722 4.63101 4.67578 4.71764 4.74260 4.80841 4.85306 4.86027 4.96847 4.97725 5.01812 5.03820 5.04616 5.05439 5.12940 5.17233 5.22679 5.35042 5.40952 5.44148 5.60238 5.69962 5.88917 5.94800 6.09530 6.13032 6.73800 7.35006 8.85239 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.004066 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.290548 B = 6884.662100 C = 7635.238673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 C -0.137 4.137 4 N -0.506 5.506 5 C 0.041 3.959 6 C -0.128 4.128 7 C 0.134 3.866 8 H 0.076 0.924 9 N -0.995 5.995 10 C 0.081 3.919 11 S 2.790 3.210 12 O -1.008 7.008 13 O -1.005 7.005 14 N -1.005 6.005 15 C 0.101 3.899 16 C 0.276 3.724 17 C -0.552 4.552 18 H 0.048 0.952 19 C 0.015 3.985 20 N -0.921 5.921 21 Si 0.953 3.047 22 H -0.279 1.279 23 H -0.271 1.271 24 H -0.267 1.267 25 C 0.034 3.966 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.015 0.985 44 H 0.029 0.971 45 H 0.268 0.732 46 H 0.046 0.954 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 18.183 1.845 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 C -0.195 4.195 4 N -0.232 5.232 5 C -0.087 4.087 6 C -0.168 4.168 7 C 0.027 3.973 8 H 0.094 0.906 9 N -0.835 5.835 10 C -0.063 4.063 11 S 2.800 3.200 12 O -0.992 6.992 13 O -0.989 6.989 14 N -0.846 5.846 15 C -0.045 4.045 16 C 0.152 3.848 17 C -0.591 4.591 18 H 0.066 0.934 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.196 1.196 24 H -0.191 1.191 25 C -0.096 4.096 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.033 0.967 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.237 17.867 1.968 20.210 hybrid contribution 0.922 -1.583 -1.076 2.125 sum -8.315 16.284 0.892 18.306 Atomic orbital electron populations 1.21824 0.93614 1.01705 1.02779 1.21955 0.96535 0.96112 0.90281 1.21787 1.00988 0.93904 1.02797 1.64936 1.08591 1.11396 1.38229 1.23217 0.88060 0.99316 0.98077 1.22866 0.97498 0.94654 1.01780 1.21782 0.94939 0.95630 0.84982 0.90616 1.57785 1.76992 1.24731 1.24011 1.21724 0.99536 0.96988 0.88060 1.01501 0.72821 0.73516 0.72204 1.93549 1.87136 1.78546 1.39996 1.93492 1.58884 1.83248 1.63301 1.57617 1.28415 1.83648 1.14908 1.21442 1.03515 1.01480 0.78052 1.18590 0.83514 0.94734 0.87942 1.21831 1.12559 0.94112 1.30629 0.93365 1.25699 0.95147 1.02562 0.95055 1.69992 1.16481 1.36265 1.33339 0.85632 0.77727 0.80147 0.78698 1.20485 1.19631 1.19138 1.23138 0.98491 0.88471 0.99510 0.91621 0.91006 0.93623 0.94789 0.91107 0.91650 0.92608 0.93786 0.87851 0.88593 0.91177 0.91216 0.88382 0.90636 0.93975 0.89825 0.90209 0.96703 0.95314 0.92330 0.93572 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.13 71.98 0.66 -1.60 16 2 C 0.06 1.05 2.36 44.91 0.11 1.16 16 3 C -0.14 -1.89 8.91 71.98 0.64 -1.25 16 4 N -0.51 -10.37 5.11 -857.84 -4.38 -14.75 16 5 C 0.04 0.83 5.45 86.65 0.47 1.30 16 6 C -0.13 -3.10 6.65 31.80 0.21 -2.89 16 7 C 0.13 3.94 3.37 45.87 0.15 4.10 16 8 H 0.08 2.74 7.01 -2.39 -0.02 2.72 16 9 N -0.99 -30.27 3.14 -511.93 -1.61 -31.87 16 10 C 0.08 1.82 9.25 127.77 1.18 3.01 16 11 S 2.79 113.85 6.01 -56.49 -0.34 113.51 16 12 O -1.01 -50.17 15.72 -128.00 -2.01 -52.19 16 13 O -1.01 -42.00 15.81 -128.00 -2.02 -44.03 16 14 N -1.00 -42.38 3.23 -543.25 -1.75 -44.13 16 15 C 0.10 3.41 10.33 127.77 1.32 4.73 16 16 C 0.28 14.09 5.12 85.63 0.44 14.52 16 17 C -0.55 -31.78 9.38 25.60 0.24 -31.54 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 19 C 0.02 0.86 5.46 84.65 0.46 1.33 16 20 N -0.92 -53.87 13.29 21.45 0.28 -53.58 16 21 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.03 0.84 4.62 86.45 0.40 1.24 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.81 7.20 -2.38 -0.02 0.80 16 29 H 0.03 0.67 7.99 -2.39 -0.02 0.65 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.05 0.76 7.25 -2.39 -0.02 0.74 16 33 H 0.04 0.92 8.00 -2.38 -0.02 0.90 16 34 H 0.10 1.70 7.79 -2.39 -0.02 1.68 16 35 H 0.10 2.07 6.84 -2.39 -0.02 2.05 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.31 7.87 -2.39 -0.02 1.29 16 38 H 0.10 1.87 6.97 -2.39 -0.02 1.86 16 39 H 0.07 1.75 7.02 -2.39 -0.02 1.73 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 2.27 7.79 -2.39 -0.02 2.25 16 42 H 0.08 2.47 7.94 -2.39 -0.02 2.45 16 43 H 0.02 0.82 7.61 -2.38 -0.02 0.80 16 44 H 0.03 1.48 7.96 -2.39 -0.02 1.46 16 45 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 47 H 0.09 2.18 7.11 -2.39 -0.02 2.16 16 Total: -1.00 -70.36 378.13 -2.60 -72.95 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.92 Total: 12.94 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 6.28 Total: -5.89 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -7.46 Total: -144.34 kcal Atomic # 8 Polarization: -92.18 SS G_CDS: -4.04 Total: -96.21 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 113.85 SS G_CDS: -0.34 Total: 113.51 kcal Total: -70.36 -2.60 -72.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452095462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.196 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds