Wall clock time and date at job start Fri Apr 10 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46784 * 2 1 4 4 C 1.50700 * 109.47320 * 239.99707 * 2 1 3 5 5 H 1.07998 * 119.99758 * 245.65124 * 4 2 1 6 6 C 1.37873 * 120.00015 * 65.64758 * 4 2 1 7 7 N 1.31516 * 120.00336 * 197.86107 * 6 4 2 8 8 Si 1.86802 * 119.99786 * 18.13669 * 6 4 2 9 9 H 1.48507 * 109.46818 * 179.72294 * 8 6 4 10 10 H 1.48493 * 109.47418 * 299.72439 * 8 6 4 11 11 H 1.48500 * 109.47084 * 59.72873 * 8 6 4 12 12 N 1.46498 * 109.46996 * 119.99410 * 2 1 3 13 13 C 1.46509 * 119.99879 * 60.00484 * 12 2 1 14 14 S 1.65599 * 120.00235 * 240.00361 * 12 2 1 15 15 O 1.42100 * 106.40270 * 203.54379 * 14 12 2 16 16 O 1.42102 * 106.39777 * 336.46008 * 14 12 2 17 17 N 1.65598 * 107.22026 * 90.00224 * 14 12 2 18 18 C 1.46494 * 120.00065 * 64.99947 * 17 14 12 19 19 C 1.52999 * 109.47062 * 164.99944 * 18 17 14 20 20 H 1.08994 * 109.47503 * 295.00258 * 19 18 17 21 21 C 1.53005 * 109.47090 * 174.99939 * 19 18 17 22 22 N 1.46901 * 109.46846 * 55.00220 * 19 18 17 23 23 C 1.48535 * 111.00201 * 71.24994 * 22 19 18 24 24 C 1.54938 * 103.22894 * 159.71946 * 23 22 19 25 25 C 1.54601 * 102.91904 * 322.58699 * 24 23 22 26 26 C 1.47903 * 110.99846 * 188.64316 * 22 19 18 27 27 H 1.09000 * 109.47471 * 294.51446 * 1 2 3 28 28 H 1.08999 * 109.47375 * 54.52191 * 1 2 3 29 29 H 1.09004 * 109.46964 * 174.52116 * 1 2 3 30 30 H 0.96998 * 119.99213 * 355.23481 * 7 6 4 31 31 H 1.08995 * 109.46858 * 90.00119 * 13 12 2 32 32 H 1.09006 * 109.46731 * 209.99692 * 13 12 2 33 33 H 1.08996 * 109.46605 * 329.99566 * 13 12 2 34 34 H 0.96998 * 119.99474 * 245.00180 * 17 14 12 35 35 H 1.08999 * 109.47400 * 285.00259 * 18 17 14 36 36 H 1.08995 * 109.47147 * 45.00442 * 18 17 14 37 37 H 1.08997 * 109.46943 * 67.91635 * 21 19 18 38 38 H 1.09004 * 109.46848 * 187.91170 * 21 19 18 39 39 H 1.09001 * 109.47153 * 307.91478 * 21 19 18 40 40 H 1.08990 * 110.66882 * 278.15793 * 23 22 19 41 41 H 1.09002 * 110.66615 * 41.28832 * 23 22 19 42 42 H 1.08997 * 110.72360 * 204.23296 * 24 23 22 43 43 H 1.08994 * 110.72452 * 80.94320 * 24 23 22 44 44 H 1.09003 * 110.30813 * 263.03682 * 25 24 23 45 45 H 1.09005 * 110.30585 * 140.87651 * 25 24 23 46 46 H 1.08993 * 109.92176 * 333.51338 * 26 22 19 47 47 H 1.09002 * 109.91480 * 94.80307 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5760 -1.6387 -1.1338 6 6 1.7980 -0.1755 -2.4793 7 7 1.9099 -0.9311 -3.5500 8 14 1.3291 1.6245 -2.6514 9 1 1.1395 1.9515 -4.0875 10 1 0.0653 1.8794 -1.9146 11 1 2.4099 2.4735 -2.0890 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1144 2.2863 15 8 3.7118 -0.8786 2.9816 16 8 3.5793 1.1831 1.5748 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0350 4.2817 19 6 0.6086 0.8078 5.4378 20 1 1.4376 1.1563 6.0536 21 6 -0.3369 -0.0422 6.2890 22 7 -0.1218 1.9636 4.9005 23 6 -1.4059 1.5422 4.2840 24 6 -2.2373 2.8495 4.2679 25 6 -1.8431 3.5263 5.6008 26 6 -0.4834 2.9097 5.9783 27 1 -0.3634 0.4264 0.9350 28 1 -0.3634 0.5964 -0.8368 29 1 -0.3633 -1.0230 -0.0981 30 1 2.2240 -1.8451 -3.4677 31 1 2.4158 -2.7376 0.9719 32 1 1.6238 -2.2851 2.5004 33 1 0.6905 -2.3001 0.9848 34 1 1.9053 1.7752 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7668 -0.8420 4.6783 37 1 0.2330 -0.8181 6.8001 38 1 -0.8307 0.5911 7.0260 39 1 -1.0865 -0.5052 5.6471 40 1 -1.2441 1.1766 3.2701 41 1 -1.8947 0.7829 4.8945 42 1 -3.3043 2.6277 4.2488 43 1 -1.9569 3.4745 3.4202 44 1 -2.5841 3.3079 6.3697 45 1 -1.7452 4.6033 5.4637 46 1 -0.5670 2.3784 6.9263 47 1 0.2712 3.6926 6.0537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554697272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:58 Heat of formation + Delta-G solvation = -66.392340 kcal Electronic energy + Delta-G solvation = -27217.579050 eV Core-core repulsion = 23562.372471 eV Total energy + Delta-G solvation = -3655.206579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76218 -36.71470 -36.31969 -35.64803 -35.23933 -32.68562 -32.50693 -29.79182 -29.28734 -28.93046 -25.94965 -25.67385 -24.57539 -22.87202 -21.11266 -20.62708 -19.84672 -18.66738 -17.52178 -17.24917 -16.94922 -16.44062 -16.17195 -15.83737 -14.98028 -14.46077 -14.19401 -14.01750 -13.66622 -13.54736 -13.40682 -13.22409 -12.91130 -12.83272 -12.35260 -12.08694 -12.02433 -12.01995 -11.76108 -11.70022 -11.56609 -11.55457 -11.48709 -11.29220 -11.28352 -11.19019 -10.94019 -10.74482 -10.65943 -10.41278 -9.91330 -9.73078 -9.26337 -9.10334 -8.57128 -8.35374 -8.01372 -6.44590 -4.06994 1.19429 3.36498 3.44523 3.51515 3.63661 3.76845 4.13330 4.36542 4.42874 4.49196 4.67230 4.69397 4.80826 4.94984 5.04995 5.06935 5.24484 5.25673 5.30508 5.33422 5.39234 5.49536 5.52387 5.58269 5.61849 5.75592 5.78710 5.82728 5.92769 5.99783 6.03728 6.10577 6.25845 6.40130 6.43078 6.57908 6.62292 6.69229 6.83236 6.98833 7.29579 7.37829 7.59644 8.01913 8.39650 8.92537 9.61114 10.93836 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.004769 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.958505 B = 5870.215424 C = 6826.798350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.604 4.604 5 H 0.063 0.937 6 C 0.035 3.965 7 N -0.902 5.902 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.276 1.276 12 N -0.985 5.985 13 C 0.112 3.888 14 S 2.779 3.221 15 O -0.997 6.997 16 O -0.976 6.976 17 N -1.123 6.123 18 C 0.134 3.866 19 C 0.065 3.935 20 H 0.090 0.910 21 C -0.187 4.187 22 N -0.509 5.509 23 C 0.024 3.976 24 C -0.124 4.124 25 C -0.130 4.130 26 C 0.032 3.968 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.420 0.580 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 4.879 21.018 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.643 4.643 5 H 0.081 0.919 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.862 3.138 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.201 1.201 12 N -0.827 5.827 13 C -0.034 4.034 14 S 2.787 3.213 15 O -0.980 6.980 16 O -0.960 6.960 17 N -0.884 5.884 18 C 0.006 3.994 19 C -0.046 4.046 20 H 0.108 0.892 21 C -0.246 4.246 22 N -0.232 5.232 23 C -0.103 4.103 24 C -0.162 4.162 25 C -0.168 4.168 26 C -0.096 4.096 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.774 6.112 19.509 22.247 hybrid contribution -0.501 -1.322 1.754 2.253 sum -9.275 4.790 21.262 23.687 Atomic orbital electron populations 1.22536 0.98785 1.01339 0.99373 1.18946 0.90726 0.93050 0.83077 0.93499 1.22167 1.40826 1.10532 0.90807 0.91862 1.25671 0.94561 1.04927 0.91959 1.70866 1.41757 1.09601 1.31416 0.84231 0.77464 0.75791 0.76323 1.20928 1.19856 1.20147 1.57483 1.70072 1.19787 1.35311 1.21136 1.01661 0.82040 0.98593 1.01954 0.73694 0.73117 0.72505 1.93535 1.69127 1.60868 1.74451 1.93605 1.74405 1.55978 1.72021 1.55985 1.61894 1.18044 1.52449 1.21166 0.94709 0.92628 0.90874 1.22019 0.96862 0.90809 0.94862 0.89224 1.22444 1.00729 1.00957 1.00486 1.64870 1.19231 1.12783 1.26363 1.23410 0.89314 0.96916 1.00690 1.22477 0.99276 0.96612 0.97866 1.22381 0.96267 1.00637 0.97544 1.22888 0.97004 0.96089 0.93577 0.95447 0.91955 0.93010 0.92207 0.93247 0.93324 0.91115 0.74546 0.92069 0.90476 0.91501 0.92018 0.91533 0.89485 0.92773 0.91237 0.90560 0.91830 0.91096 0.93479 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.73 37.16 0.32 -2.96 16 2 C 0.25 5.78 2.21 -69.08 -0.15 5.63 16 3 H 0.05 1.16 5.55 -51.93 -0.29 0.87 16 4 C -0.60 -16.76 8.67 -34.44 -0.30 -17.06 16 5 H 0.06 1.89 7.75 -52.49 -0.41 1.48 16 6 C 0.03 1.00 5.34 -17.82 -0.10 0.90 16 7 N -0.90 -27.42 13.70 55.43 0.76 -26.66 16 8 Si 1.03 25.12 26.45 -169.99 -4.50 20.63 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.27 -5.89 5.51 56.52 0.31 -5.58 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.98 -20.07 3.12 -115.85 -0.36 -20.43 16 13 C 0.11 1.99 9.48 59.85 0.57 2.55 16 14 S 2.78 54.04 6.09 -107.50 -0.66 53.38 16 15 O -1.00 -20.72 16.68 -57.17 -0.95 -21.67 16 16 O -0.98 -22.68 16.70 -57.17 -0.95 -23.63 16 17 N -1.12 -16.25 5.97 -10.62 -0.06 -16.31 16 18 C 0.13 1.56 5.62 -4.05 -0.02 1.54 16 19 C 0.06 0.61 2.50 -67.71 -0.17 0.44 16 20 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 21 C -0.19 -1.39 8.15 37.16 0.30 -1.09 16 22 N -0.51 -4.97 4.50 -222.50 -1.00 -5.97 16 23 C 0.02 0.23 5.59 -1.90 -0.01 0.22 16 24 C -0.12 -1.04 7.06 -24.87 -0.18 -1.22 16 25 C -0.13 -0.96 6.93 -25.37 -0.18 -1.14 16 26 C 0.03 0.26 6.43 -2.76 -0.02 0.24 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.32 4.85 -51.93 -0.25 1.07 16 29 H 0.05 1.03 6.90 -51.93 -0.36 0.67 16 30 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 31 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 33 H 0.07 1.20 6.54 -51.93 -0.34 0.86 16 34 H 0.42 5.76 8.09 -34.46 -0.28 5.48 16 35 H 0.06 0.69 7.53 -51.93 -0.39 0.30 16 36 H 0.08 0.89 7.75 -51.93 -0.40 0.48 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.43 6.29 -51.93 -0.33 0.10 16 39 H 0.07 0.50 6.41 -51.93 -0.33 0.16 16 40 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.05 0.45 5.46 -51.93 -0.28 0.17 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.34 6.04 -51.93 -0.31 0.03 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -33.55 366.41 -9.96 -43.51 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.83 Total: 3.59 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.67 Total: -69.37 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.91 Total: -45.31 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.50 Total: 20.63 kcal Atomic # 16 Polarization: 54.04 SS G_CDS: -0.66 Total: 53.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.55 -9.96 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554697272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.887 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds