Wall clock time and date at job start Fri Apr 10 2020 18:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47483 * 2 1 4 4 C 1.50696 * 109.47620 * 239.99405 * 2 1 3 5 5 H 1.07997 * 120.00414 * 245.03974 * 4 2 1 6 6 C 1.37884 * 119.99672 * 65.03108 * 4 2 1 7 7 N 1.31515 * 119.99812 * 5.65223 * 6 4 2 8 8 Si 1.86793 * 120.00041 * 185.64787 * 6 4 2 9 9 H 1.48498 * 109.47282 * 85.00079 * 8 6 4 10 10 H 1.48502 * 109.47133 * 205.00227 * 8 6 4 11 11 H 1.48505 * 109.47100 * 324.99726 * 8 6 4 12 12 N 1.46508 * 109.47110 * 119.99349 * 2 1 3 13 13 C 1.46505 * 119.99489 * 60.00275 * 12 2 1 14 14 S 1.65593 * 120.00231 * 240.00295 * 12 2 1 15 15 O 1.42096 * 106.40088 * 203.54152 * 14 12 2 16 16 O 1.42103 * 106.40085 * 336.45661 * 14 12 2 17 17 N 1.65598 * 107.22093 * 90.00111 * 14 12 2 18 18 C 1.46497 * 120.00090 * 64.99716 * 17 14 12 19 19 C 1.53000 * 109.47323 * 163.34116 * 18 17 14 20 20 H 1.08998 * 109.47551 * 174.30196 * 19 18 17 21 21 C 1.53002 * 109.46968 * 294.30348 * 19 18 17 22 22 N 1.46900 * 109.47000 * 54.30291 * 19 18 17 23 23 C 1.48524 * 111.00351 * 60.47949 * 22 19 18 24 24 C 1.54933 * 103.22948 * 159.72115 * 23 22 19 25 25 C 1.54600 * 102.92170 * 322.58615 * 24 23 22 26 26 C 1.47908 * 110.99758 * 177.87941 * 22 19 18 27 27 H 1.09001 * 109.46683 * 174.55783 * 1 2 3 28 28 H 1.08997 * 109.47291 * 294.56409 * 1 2 3 29 29 H 1.09005 * 109.46974 * 54.56268 * 1 2 3 30 30 H 0.97007 * 119.99792 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46781 * 90.00276 * 13 12 2 32 32 H 1.08996 * 109.46652 * 210.00134 * 13 12 2 33 33 H 1.08998 * 109.46956 * 329.99823 * 13 12 2 34 34 H 0.97004 * 119.99770 * 245.00093 * 17 14 12 35 35 H 1.09002 * 109.47336 * 283.34084 * 18 17 14 36 36 H 1.08994 * 109.47253 * 43.33610 * 18 17 14 37 37 H 1.08998 * 109.47108 * 59.99577 * 21 19 18 38 38 H 1.09000 * 109.47061 * 179.97438 * 21 19 18 39 39 H 1.09000 * 109.47286 * 300.00255 * 21 19 18 40 40 H 1.09004 * 110.66625 * 278.15412 * 23 22 19 41 41 H 1.09007 * 110.66450 * 41.28261 * 23 22 19 42 42 H 1.09010 * 110.72383 * 204.23045 * 24 23 22 43 43 H 1.08990 * 110.88161 * 81.01633 * 24 23 22 44 44 H 1.09004 * 110.30963 * 263.04224 * 25 24 23 45 45 H 1.08989 * 110.31259 * 140.87671 * 25 24 23 46 46 H 1.08999 * 109.91601 * 333.50592 * 26 22 19 47 47 H 1.08997 * 109.92101 * 94.80431 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5846 -1.6336 -1.1333 6 6 1.7870 -0.1821 -2.4800 7 7 1.2131 0.9956 -2.5948 8 14 2.2699 -1.1390 -4.0099 9 1 1.1880 -2.0947 -4.3580 10 1 2.4794 -0.1961 -5.1379 11 1 3.5263 -1.8867 -3.7500 12 7 2.0184 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8787 2.9816 16 8 3.5794 1.1830 1.5748 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0350 4.2817 19 6 0.6427 0.7983 5.4600 20 1 -0.0410 0.1988 6.0610 21 6 1.8276 1.2385 6.3220 22 7 -0.0616 1.9839 4.9536 23 6 -1.2276 1.5947 4.1199 24 6 -2.1103 2.8679 4.1285 25 6 -1.9349 3.4005 5.5692 26 6 -0.6119 2.7888 6.0658 27 1 -0.3633 -1.0231 -0.0975 28 1 -0.3634 0.4272 0.9346 29 1 -0.3633 0.5959 -0.8373 30 1 1.0408 1.3675 -3.4741 31 1 2.4158 -2.7376 0.9719 32 1 1.6237 -2.2850 2.5003 33 1 0.6904 -2.3001 0.9848 34 1 1.9054 1.7753 3.4681 35 1 0.3022 -0.4328 3.7253 36 1 1.7590 -0.8589 4.6549 37 1 2.5113 1.8381 5.7210 38 1 1.4656 1.8325 7.1612 39 1 2.3503 0.3588 6.6977 40 1 -0.9113 1.3527 3.1052 41 1 -1.7586 0.7553 4.5690 42 1 -3.1530 2.6157 3.9347 43 1 -1.7496 3.5956 3.4017 44 1 -2.7629 3.0721 6.1974 45 1 -1.8707 4.4885 5.5651 46 1 -0.7990 2.1502 6.9292 47 1 0.0871 3.5817 6.3316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554697277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:05 Heat of formation + Delta-G solvation = -73.696024 kcal Electronic energy + Delta-G solvation = -27173.621265 eV Core-core repulsion = 23518.097975 eV Total energy + Delta-G solvation = -3655.523290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47353 -36.58015 -36.11785 -35.70603 -35.10549 -32.50991 -32.32199 -29.38690 -29.14062 -28.73007 -25.92894 -25.52328 -25.06538 -22.34872 -20.87448 -20.75480 -20.06060 -18.73880 -17.27694 -16.83623 -16.51893 -16.19117 -15.90570 -15.48036 -14.85537 -14.57819 -14.22223 -14.06419 -13.51569 -13.40151 -13.20023 -13.02359 -12.84812 -12.69444 -12.35157 -11.95981 -11.74237 -11.70259 -11.55292 -11.45972 -11.37980 -11.36945 -11.23798 -11.16904 -11.12625 -10.94062 -10.81832 -10.75130 -10.67637 -10.44887 -10.28564 -9.95416 -9.24877 -9.11079 -8.54311 -8.40010 -7.93250 -6.04378 -4.08242 1.34125 3.31286 3.37960 3.41557 3.57963 3.84863 4.25414 4.44422 4.47407 4.51911 4.76223 4.84177 4.90490 5.09065 5.14679 5.23162 5.28427 5.36477 5.44230 5.51984 5.60158 5.62560 5.68760 5.70610 5.74037 5.77545 5.88339 6.00238 6.07172 6.11595 6.15913 6.20634 6.40774 6.65200 6.75009 6.78394 6.79028 6.94361 7.02121 7.35244 7.54999 7.68754 7.83420 8.01292 8.31513 8.93962 9.56526 11.03426 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.004322 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.877138 B = 6476.515428 C = 7478.628373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.064 0.936 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.780 3.220 15 O -1.001 7.001 16 O -0.975 6.975 17 N -1.122 6.122 18 C 0.131 3.869 19 C 0.068 3.932 20 H 0.052 0.948 21 C -0.145 4.145 22 N -0.510 5.510 23 C 0.032 3.968 24 C -0.124 4.124 25 C -0.131 4.131 26 C 0.038 3.962 27 H 0.035 0.965 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.420 0.580 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 1.132 17.814 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.834 5.834 13 C -0.037 4.037 14 S 2.788 3.212 15 O -0.984 6.984 16 O -0.959 6.959 17 N -0.883 5.883 18 C 0.003 3.997 19 C -0.042 4.042 20 H 0.069 0.931 21 C -0.203 4.203 22 N -0.235 5.235 23 C -0.095 4.095 24 C -0.162 4.162 25 C -0.170 4.170 26 C -0.090 4.090 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.273 1.403 17.378 18.529 hybrid contribution -0.903 -0.641 -0.404 1.179 sum -7.176 0.762 16.973 18.444 Atomic orbital electron populations 1.22035 0.98638 1.00029 0.99218 1.18707 0.90832 0.93402 0.80535 0.91808 1.21312 1.35631 1.08943 0.90220 0.92008 1.24911 0.95164 0.94747 0.98961 1.69924 1.42959 1.15860 1.23960 0.86558 0.78926 0.79718 0.82471 1.20628 1.21236 1.19922 1.57705 1.70058 1.19634 1.35973 1.21133 1.01535 0.82446 0.98564 1.01905 0.73698 0.73111 0.72449 1.93522 1.69300 1.60989 1.74607 1.93616 1.74407 1.55916 1.71911 1.55995 1.61907 1.18012 1.52356 1.21190 0.94983 0.92770 0.90770 1.21999 0.96050 0.91176 0.94969 0.93059 1.21843 0.97650 1.01848 0.98955 1.64712 1.23083 1.18244 1.17508 1.23296 0.90421 0.96425 0.99368 1.22473 0.99457 0.97497 0.96766 1.22405 0.96788 1.00976 0.96794 1.22834 0.95707 0.97422 0.93006 0.94627 0.96673 0.90556 0.92748 0.93374 0.93536 0.91166 0.74494 0.92133 0.90395 0.91276 0.92759 0.91913 0.88991 0.93895 0.91212 0.90424 0.91854 0.91118 0.93980 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.82 37.16 0.33 -2.72 16 2 C 0.27 6.52 2.50 -69.08 -0.17 6.35 16 3 H 0.06 1.75 6.89 -51.93 -0.36 1.40 16 4 C -0.52 -14.10 8.34 -34.44 -0.29 -14.39 16 5 H 0.06 1.67 7.52 -52.49 -0.39 1.27 16 6 C 0.06 1.78 5.28 -17.82 -0.09 1.68 16 7 N -0.89 -25.08 11.99 55.43 0.66 -24.42 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.99 -20.38 3.12 -115.85 -0.36 -20.74 16 13 C 0.11 1.92 9.48 59.85 0.57 2.49 16 14 S 2.78 54.99 6.09 -107.50 -0.66 54.33 16 15 O -1.00 -20.91 16.66 -57.17 -0.95 -21.86 16 16 O -0.97 -23.36 16.70 -57.17 -0.95 -24.31 16 17 N -1.12 -16.84 5.49 -10.62 -0.06 -16.90 16 18 C 0.13 1.59 5.46 -4.04 -0.02 1.57 16 19 C 0.07 0.70 2.06 -67.71 -0.14 0.56 16 20 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 21 C -0.15 -1.42 9.02 37.16 0.34 -1.08 16 22 N -0.51 -5.42 4.32 -222.50 -0.96 -6.38 16 23 C 0.03 0.34 5.46 -1.90 -0.01 0.33 16 24 C -0.12 -1.17 7.06 -24.87 -0.18 -1.35 16 25 C -0.13 -1.08 6.93 -25.37 -0.18 -1.25 16 26 C 0.04 0.34 5.45 -2.75 -0.01 0.32 16 27 H 0.03 0.73 6.90 -51.93 -0.36 0.38 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 1.85 6.84 -51.93 -0.36 1.50 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 33 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 34 H 0.42 6.13 7.88 -34.47 -0.27 5.86 16 35 H 0.06 0.71 7.25 -51.93 -0.38 0.33 16 36 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 37 H 0.07 0.76 7.63 -51.93 -0.40 0.37 16 38 H 0.05 0.46 7.18 -51.93 -0.37 0.08 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 41 H 0.04 0.42 7.99 -51.92 -0.42 0.01 16 42 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 46 H 0.04 0.34 7.60 -51.93 -0.39 -0.05 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -32.07 376.03 -10.67 -42.73 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.17 Total: 3.11 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 0.14 Total: -7.49 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.72 Total: -68.44 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.91 Total: -46.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.66 Total: 54.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.07 -10.67 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554697277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.962 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds