Wall clock time and date at job start Fri Apr 10 2020 18:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47504 * 2 1 4 4 N 1.46905 * 109.46501 * 119.99541 * 2 1 3 5 5 C 1.53001 * 109.47389 * 239.99410 * 2 1 3 6 6 C 1.53002 * 109.47225 * 175.00289 * 5 2 1 7 7 H 1.09004 * 109.46947 * 305.00402 * 6 5 2 8 8 C 1.52993 * 109.47133 * 185.00085 * 6 5 2 9 9 N 1.46506 * 109.46906 * 64.99965 * 6 5 2 10 10 C 1.34773 * 119.99568 * 205.00159 * 9 6 5 11 11 O 1.21362 * 120.00477 * 359.97438 * 10 9 6 12 12 C 1.49357 * 119.99690 * 180.02562 * 10 9 6 13 13 O 1.21380 * 120.00279 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00198 * 179.97438 * 12 10 9 15 15 C 1.39740 * 120.00273 * 174.88727 * 14 12 10 16 16 C 1.39346 * 119.95404 * 145.76427 * 15 14 12 17 17 C 1.38472 * 120.42520 * 179.97438 * 16 15 14 18 18 C 1.37688 * 120.32791 * 359.97438 * 17 16 15 19 19 C 1.40752 * 119.89768 * 0.02562 * 18 17 16 20 20 C 1.41412 * 120.20761 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99883 * 205.18167 * 20 19 18 22 22 C 1.39924 * 119.99871 * 25.18151 * 20 19 18 23 23 N 1.30832 * 120.00574 * 16.79951 * 22 20 19 24 24 Si 1.86810 * 119.99967 * 196.79925 * 22 20 19 25 25 H 1.48500 * 109.46709 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46978 * 119.99689 * 24 22 20 27 27 H 1.48500 * 109.46933 * 240.00096 * 24 22 20 28 28 C 1.38299 * 119.95540 * 325.49496 * 15 14 12 29 29 H 1.08993 * 109.47446 * 300.00821 * 1 2 3 30 30 H 1.08994 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46730 * 60.00247 * 1 2 3 32 32 H 1.00893 * 111.00045 * 296.04201 * 4 2 1 33 33 H 1.00897 * 111.00290 * 60.00585 * 4 2 1 34 34 H 1.09004 * 109.46787 * 295.00422 * 5 2 1 35 35 H 1.08993 * 109.46977 * 55.00219 * 5 2 1 36 36 H 1.09004 * 109.47463 * 300.00001 * 8 6 5 37 37 H 1.09001 * 109.47366 * 59.99926 * 8 6 5 38 38 H 1.09000 * 109.47200 * 180.02562 * 8 6 5 39 39 H 0.96999 * 119.99809 * 24.99872 * 9 6 5 40 40 H 0.96999 * 120.00128 * 354.89346 * 14 12 10 41 41 H 1.08001 * 119.78321 * 359.95697 * 16 15 14 42 42 H 1.08002 * 119.83389 * 180.02562 * 17 16 15 43 43 H 1.07996 * 120.05351 * 180.02562 * 18 17 16 44 44 H 0.96993 * 120.00270 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.16253 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0195 -0.6924 1.1996 5 6 2.0401 -0.7214 -1.2492 6 6 3.5649 -0.6135 -1.3135 7 1 3.8572 0.4357 -1.2676 8 6 4.0646 -1.2253 -2.6238 9 7 4.1537 -1.3343 -0.1821 10 6 5.3747 -0.9911 0.2736 11 8 5.9867 -0.0853 -0.2535 12 6 5.9752 -1.7264 1.4267 13 8 5.3633 -2.6326 1.9537 14 7 7.1964 -1.3836 1.8822 15 6 7.7134 -1.9978 3.0260 16 6 9.0817 -2.2409 3.1271 17 6 9.6045 -2.8484 4.2562 18 6 8.7771 -3.2189 5.2926 19 6 7.3928 -2.9799 5.2049 20 6 6.5371 -3.3572 6.2656 21 1 5.4942 -3.5606 6.0719 22 6 7.0415 -3.4670 7.5662 23 7 8.1894 -2.9185 7.8712 24 14 6.0758 -4.3970 8.8671 25 1 4.8190 -4.9183 8.2722 26 1 6.8915 -5.5299 9.3736 27 1 5.7490 -3.4814 9.9897 28 6 6.8669 -2.3587 4.0585 29 1 -0.3634 0.5139 0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.7501 -0.1988 2.0372 33 1 1.6961 -1.6479 1.2229 34 1 1.7516 -1.7716 -1.2054 35 1 1.6055 -0.2619 -2.1369 36 1 3.7724 -2.2744 -2.6697 37 1 3.6266 -0.6890 -3.4656 38 1 5.1510 -1.1488 -2.6694 39 1 3.6646 -2.0585 0.2390 40 1 7.7166 -0.7104 1.4162 41 1 9.7387 -1.9537 2.3194 42 1 10.6666 -3.0319 4.3247 43 1 9.1896 -3.6921 6.1713 44 1 8.5392 -2.9950 8.7726 45 1 5.8067 -2.1665 3.9834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584782899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:09 Heat of formation + Delta-G solvation = -77.605686 kcal Electronic energy + Delta-G solvation = -26576.338972 eV Core-core repulsion = 22785.202195 eV Total energy + Delta-G solvation = -3791.136777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86878 -40.27555 -38.87564 -38.30720 -36.39572 -35.57976 -34.77186 -32.30868 -31.76436 -30.22643 -29.71708 -27.71738 -27.27984 -26.08317 -23.26621 -22.74921 -21.97668 -21.69612 -21.03581 -19.81978 -19.06020 -17.95032 -17.39701 -17.16827 -16.88711 -16.58681 -16.42906 -16.27100 -15.66976 -15.48267 -15.08711 -14.85190 -14.63732 -14.42218 -14.29223 -13.97652 -13.56810 -13.53602 -13.42406 -13.06906 -13.01925 -12.96859 -12.86287 -12.78937 -12.54827 -12.28966 -12.17249 -11.86557 -11.75156 -11.66331 -11.50878 -11.13797 -10.89407 -10.48353 -10.18233 -9.43122 -9.40655 -8.80416 -8.61177 -6.35988 0.28787 0.96461 1.11160 1.38776 1.45479 1.52474 1.55190 2.22531 2.27863 2.74028 2.77581 3.48357 3.65112 3.73106 3.74398 4.01699 4.25129 4.36755 4.42924 4.45549 4.58422 4.61240 4.72270 4.78505 4.94317 4.95808 4.96884 5.03521 5.08256 5.10469 5.15693 5.17812 5.27645 5.31116 5.34571 5.48966 5.65743 5.81214 6.05834 6.07850 6.18378 6.30422 6.33367 6.53482 6.58452 6.66725 6.89348 6.96292 7.00246 7.10486 8.34546 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003169 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.885906 B = 8834.405673 C =10431.357925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.070 0.930 4 N -0.855 5.855 5 C -0.113 4.113 6 C 0.144 3.856 7 H 0.074 0.926 8 C -0.162 4.162 9 N -0.650 5.650 10 C 0.520 3.480 11 O -0.554 6.554 12 C 0.495 3.505 13 O -0.525 6.525 14 N -0.635 5.635 15 C 0.152 3.848 16 C -0.250 4.250 17 C -0.089 4.089 18 C -0.195 4.195 19 C 0.092 3.908 20 C -0.498 4.498 21 H 0.068 0.932 22 C 0.037 3.963 23 N -0.822 5.822 24 Si 0.982 3.018 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.264 1.264 28 C -0.231 4.231 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.342 0.658 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.416 0.584 40 H 0.422 0.578 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.289 0.711 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 4.134 -16.286 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.088 0.912 4 N -0.385 5.385 5 C -0.151 4.151 6 C 0.041 3.959 7 H 0.093 0.907 8 C -0.221 4.221 9 N -0.301 5.301 10 C 0.300 3.700 11 O -0.433 6.433 12 C 0.278 3.722 13 O -0.400 6.400 14 N -0.281 5.281 15 C 0.060 3.940 16 C -0.271 4.271 17 C -0.108 4.108 18 C -0.215 4.215 19 C 0.089 3.911 20 C -0.527 4.527 21 H 0.086 0.914 22 C -0.178 4.178 23 N -0.448 5.448 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.185 1.185 27 H -0.188 1.188 28 C -0.252 4.252 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.254 0.746 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.658 4.347 -16.445 20.622 hybrid contribution -1.159 -0.303 1.179 1.681 sum -12.817 4.044 -15.266 20.339 Atomic orbital electron populations 1.22547 0.96437 1.02343 1.02550 1.21492 0.92822 0.97952 0.90418 0.91215 1.58946 1.67745 1.06884 1.04959 1.21993 0.92052 1.02422 0.98659 1.21161 0.93784 0.96466 0.84488 0.90749 1.22194 1.01049 1.02029 0.96779 1.45674 1.15351 1.36468 1.32635 1.19577 0.83625 0.83583 0.83255 1.90705 1.62265 1.31038 1.59301 1.20706 0.82320 0.84042 0.85168 1.90775 1.60896 1.29627 1.58716 1.43087 1.17556 1.40915 1.26549 1.17533 0.93108 0.97914 0.85488 1.20481 0.92634 1.12846 1.01150 1.20822 0.98954 0.97906 0.93129 1.21358 0.94016 1.06663 0.99445 1.17810 0.93270 0.88388 0.91657 1.19775 0.96934 1.43073 0.92966 0.91424 1.26717 0.96029 0.93622 1.01386 1.69863 1.19345 1.33352 1.22244 0.85165 0.79010 0.78634 0.76911 1.18616 1.18479 1.18829 1.20943 0.98175 1.10038 0.96055 0.93118 0.92236 0.91095 0.84472 0.84424 0.90164 0.87278 0.91537 0.89077 0.94102 0.74584 0.74017 0.85402 0.85758 0.87534 0.89998 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.48 71.98 0.68 -1.17 16 2 C 0.08 1.13 3.36 44.91 0.15 1.29 16 3 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 4 N -0.85 -14.84 6.94 -168.66 -1.17 -16.02 16 5 C -0.11 -1.27 4.51 30.60 0.14 -1.13 16 6 C 0.14 2.55 2.57 44.99 0.12 2.67 16 7 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 8 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 9 N -0.65 -15.48 3.79 -443.95 -1.68 -17.17 16 10 C 0.52 16.42 7.85 87.24 0.68 17.10 16 11 O -0.55 -18.87 16.15 -3.28 -0.05 -18.92 16 12 C 0.50 18.93 7.61 87.24 0.66 19.59 16 13 O -0.52 -22.87 14.23 -3.34 -0.05 -22.91 16 14 N -0.63 -24.78 5.32 -304.98 -1.62 -26.40 16 15 C 0.15 7.11 6.25 38.16 0.24 7.35 16 16 C -0.25 -10.93 9.97 22.59 0.23 -10.71 16 17 C -0.09 -4.14 10.01 22.20 0.22 -3.92 16 18 C -0.19 -10.50 8.69 22.75 0.20 -10.30 16 19 C 0.09 5.23 5.57 -21.31 -0.12 5.11 16 20 C -0.50 -28.36 9.05 23.46 0.21 -28.15 16 21 H 0.07 3.83 7.90 -2.91 -0.02 3.81 16 22 C 0.04 1.94 5.16 85.25 0.44 2.38 16 23 N -0.82 -43.57 10.94 21.82 0.24 -43.34 16 24 Si 0.98 39.31 29.59 68.60 2.03 41.34 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 28 C -0.23 -12.41 8.39 22.86 0.19 -12.21 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.34 6.07 9.07 -89.70 -0.81 5.26 16 33 H 0.34 5.37 8.79 -89.70 -0.79 4.59 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.42 9.67 6.92 -92.71 -0.64 9.03 16 40 H 0.42 14.19 8.30 -92.71 -0.77 13.42 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 43 H 0.11 5.91 6.17 -2.91 -0.02 5.90 16 44 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 45 H 0.09 5.07 6.48 -2.91 -0.02 5.05 16 Total: -1.00 -68.06 375.12 0.46 -67.60 By element: Atomic # 1 Polarization: 51.69 SS G_CDS: -1.96 Total: 49.73 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.73 Total: -13.92 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -4.24 Total: -102.92 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.10 Total: -41.83 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -68.06 0.46 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584782899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.004 kcal (2) G-P(sol) polarization free energy of solvation -68.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds