Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 S 1.65603 * 119.99955 * 2 1 4 4 O 1.42101 * 106.40028 * 311.46244 * 3 2 1 5 5 O 1.42094 * 106.40153 * 178.53874 * 3 2 1 6 6 N 1.65605 * 107.21762 * 64.99871 * 3 2 1 7 7 C 1.46501 * 119.99908 * 65.00077 * 6 3 2 8 8 C 1.53120 * 109.51851 * 144.99559 * 7 6 3 9 9 C 1.53045 * 109.27382 * 177.56064 * 8 7 6 10 10 N 1.46844 * 109.52143 * 300.82250 * 9 8 7 11 11 C 1.46906 * 110.99887 * 185.83959 * 10 9 8 12 12 C 1.53000 * 109.47072 * 170.00138 * 11 10 9 13 13 H 1.08998 * 109.47666 * 54.99810 * 12 11 10 14 14 C 1.53005 * 109.46913 * 294.99925 * 12 11 10 15 15 C 1.52998 * 109.46937 * 175.00313 * 12 11 10 16 16 C 1.50707 * 109.47006 * 184.99877 * 15 12 11 17 17 H 1.07996 * 119.99871 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99966 * 179.97438 * 16 15 12 19 19 N 1.31520 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99820 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47440 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46880 * 120.00542 * 20 18 16 23 23 H 1.48503 * 109.47137 * 240.00094 * 20 18 16 24 24 C 1.46853 * 111.20068 * 61.74346 * 10 9 8 25 25 C 1.53033 * 109.52262 * 298.25891 * 24 10 9 26 26 H 1.08991 * 109.47207 * 60.00011 * 1 2 3 27 27 H 1.08998 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46683 * 300.00186 * 1 2 3 29 29 H 0.96992 * 119.99904 * 179.97438 * 2 1 3 30 30 H 0.97001 * 119.99959 * 245.00207 * 6 3 2 31 31 H 1.08999 * 109.51890 * 24.87087 * 7 6 3 32 32 H 1.08996 * 109.49890 * 57.62537 * 8 7 6 33 33 H 1.08989 * 109.54077 * 297.51899 * 8 7 6 34 34 H 1.09000 * 109.46052 * 180.80838 * 9 8 7 35 35 H 1.08998 * 109.45499 * 60.82968 * 9 8 7 36 36 H 1.08993 * 109.47164 * 289.99991 * 11 10 9 37 37 H 1.08996 * 109.46920 * 50.00025 * 11 10 9 38 38 H 1.08995 * 109.47281 * 60.00455 * 14 12 11 39 39 H 1.09000 * 109.46871 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47528 * 300.00033 * 14 12 11 41 41 H 1.09002 * 109.46907 * 304.99730 * 15 12 11 42 42 H 1.09002 * 109.47546 * 64.99887 * 15 12 11 43 43 H 0.96993 * 119.99901 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46125 * 58.27453 * 24 10 9 45 45 H 1.09003 * 109.46462 * 178.23846 * 24 10 9 46 46 H 1.09007 * 109.50330 * 299.23709 * 25 24 10 47 47 H 1.08999 * 109.53502 * 179.13924 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 7 1.9592 2.1930 1.4336 7 6 2.3999 1.5975 2.6975 8 6 2.7875 2.7076 3.6783 9 6 3.1887 2.0822 5.0163 10 7 2.0645 1.3029 5.5504 11 6 2.3647 0.8019 6.8984 12 6 1.0952 0.2148 7.5186 13 1 0.6839 -0.5451 6.8541 14 6 0.0646 1.3275 7.7205 15 6 1.4335 -0.4183 8.8698 16 6 0.2107 -1.1032 9.4238 17 1 -0.7149 -1.0887 8.8676 18 6 0.2740 -1.7491 10.6403 19 7 1.4014 -1.7671 11.3174 20 14 -1.2418 -2.5974 11.3274 21 1 -2.3735 -2.4325 10.3802 22 1 -0.9586 -4.0434 11.5126 23 1 -1.5981 -1.9913 12.6354 24 6 1.7052 0.2018 4.6477 25 6 1.2598 0.7710 3.2988 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 1.4718 3.0316 1.4365 31 1 3.2610 0.9544 2.5164 32 1 1.9379 3.3737 3.8282 33 1 3.6270 3.2737 3.2750 34 1 3.4515 2.8707 5.7215 35 1 4.0469 1.4268 4.8679 36 1 3.1300 0.0283 6.8364 37 1 2.7263 1.6220 7.5186 38 1 -0.1765 1.7785 6.7580 39 1 -0.8400 0.9091 8.1619 40 1 0.4757 2.0874 8.3850 41 1 2.2314 -1.1492 8.7389 42 1 1.7609 0.3570 9.5625 43 1 1.4461 -2.2218 12.1730 44 1 2.5704 -0.4448 4.5012 45 1 0.8906 -0.3755 5.0851 46 1 0.3861 1.4068 3.4427 47 1 1.0076 -0.0466 2.6235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = -95.012896 kcal Electronic energy + Delta-G solvation = -25883.323921 eV Core-core repulsion = 22226.876262 eV Total energy + Delta-G solvation = -3656.447659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40461 -37.51289 -36.43540 -36.14544 -35.31602 -34.30443 -32.24393 -30.95910 -30.38335 -26.87553 -26.37021 -25.68861 -23.62012 -23.25419 -22.00938 -20.38926 -19.97234 -18.83066 -18.38851 -17.72119 -17.08263 -16.43534 -15.96263 -15.25149 -14.97464 -14.85631 -14.61148 -14.44643 -14.11950 -13.87838 -13.84300 -13.42684 -13.21310 -12.64352 -12.56347 -12.42310 -12.33168 -12.24027 -12.12641 -11.98248 -11.72132 -11.43108 -11.32716 -11.26464 -11.10380 -10.86699 -10.73548 -10.62279 -10.30389 -10.25243 -10.04062 -9.81147 -9.54464 -9.15016 -8.95796 -8.34830 -8.06705 -5.99587 -4.00653 0.31938 2.55587 3.27216 3.30122 3.37995 3.41501 4.05266 4.16175 4.42022 4.46768 4.59821 4.69319 4.81545 4.95517 5.06075 5.10249 5.28613 5.34895 5.36394 5.37640 5.42639 5.53186 5.58502 5.65739 5.76194 5.82502 5.95857 6.00586 6.04829 6.15404 6.20067 6.38107 6.47436 6.52711 6.67072 6.70645 6.98596 7.11502 7.18734 7.35064 7.39571 7.67904 7.83606 8.00821 8.44710 9.06093 9.62902 11.12001 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024297 B = 0.002544 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.152050 B =11002.012840 C =11613.867396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.131 6.131 3 S 2.792 3.208 4 O -0.983 6.983 5 O -0.980 6.980 6 N -1.120 6.120 7 C 0.149 3.851 8 C -0.116 4.116 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.061 3.939 12 C -0.081 4.081 13 H 0.056 0.944 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.053 3.947 25 C -0.133 4.133 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.417 0.583 30 H 0.417 0.583 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.031 0.969 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 6.655 -21.860 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.892 5.892 3 S 2.797 3.203 4 O -0.966 6.966 5 O -0.964 6.964 6 N -0.880 5.880 7 C 0.042 3.958 8 C -0.156 4.156 9 C -0.074 4.074 10 N -0.259 5.259 11 C -0.066 4.066 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.179 4.179 15 C -0.011 4.011 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.076 4.076 25 C -0.173 4.173 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.250 0.750 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.699 7.233 -22.397 23.547 hybrid contribution -0.341 -1.284 0.859 1.582 sum 0.358 5.949 -21.538 22.347 Atomic orbital electron populations 1.21465 0.78445 1.04241 1.01966 1.55667 1.16370 1.25116 1.92023 1.01689 0.73108 0.72740 0.72761 1.93626 1.79150 1.68846 1.54974 1.93638 1.31810 1.83997 1.86931 1.55907 1.73499 1.36294 1.22348 1.20940 0.96739 0.95269 0.82872 1.21831 1.02279 0.97378 0.94090 1.22049 0.92171 0.97663 0.95523 1.61988 1.37464 1.23674 1.02781 1.22314 0.98358 0.98343 0.87621 1.21230 0.93238 0.96666 0.98818 0.92610 1.21572 0.99222 0.97650 0.99455 1.19135 0.96714 0.95245 0.90029 1.21264 0.96866 1.32985 1.03842 0.92548 1.25025 0.95832 0.96588 0.97139 1.69974 1.25342 1.43942 1.14403 0.86585 0.83430 0.79282 0.78991 1.19762 1.21143 1.21093 1.22098 1.00703 0.92765 0.92005 1.22179 0.98985 0.99729 0.96407 0.91658 0.89991 0.91890 0.74969 0.74928 0.89464 0.90307 0.90995 0.90284 0.94931 0.95271 0.91202 0.93959 0.92868 0.94240 0.96983 0.96596 0.93153 0.95040 0.89326 0.90207 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.85 59.85 0.65 1.09 16 2 N -1.13 -7.27 5.88 -16.63 -0.10 -7.37 16 3 S 2.79 25.58 6.16 -107.50 -0.66 24.92 16 4 O -0.98 -11.86 17.86 -57.17 -1.02 -12.88 16 5 O -0.98 -12.29 17.48 -57.17 -1.00 -13.29 16 6 N -1.12 -8.43 5.53 -4.79 -0.03 -8.46 16 7 C 0.15 1.30 2.88 -67.81 -0.20 1.10 16 8 C -0.12 -1.04 5.63 -26.65 -0.15 -1.19 16 9 C 0.05 0.60 5.46 -3.83 -0.02 0.58 16 10 N -0.53 -7.02 4.11 -234.66 -0.96 -7.98 16 11 C 0.06 0.98 4.35 -3.82 -0.02 0.97 16 12 C -0.08 -1.56 2.26 -90.62 -0.20 -1.77 16 13 H 0.06 1.09 6.22 -51.93 -0.32 0.76 16 14 C -0.12 -2.24 8.89 37.16 0.33 -1.91 16 15 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 16 C -0.51 -13.99 8.41 -34.44 -0.29 -14.28 16 17 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.05 0.63 5.30 -3.83 -0.02 0.61 16 25 C -0.13 -1.20 5.70 -26.66 -0.15 -1.35 16 26 H 0.06 0.36 8.10 -51.93 -0.42 -0.07 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.29 7.74 -51.93 -0.40 -0.11 16 29 H 0.42 2.10 8.96 -34.47 -0.31 1.79 16 30 H 0.42 2.49 8.84 -34.47 -0.30 2.19 16 31 H 0.09 0.82 7.50 -51.93 -0.39 0.43 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 34 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 38 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 39 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 1.17 6.12 -51.93 -0.32 0.85 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.52 7.05 -51.93 -0.37 0.15 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -34.14 378.81 -10.80 -44.94 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.16 Total: -1.85 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.18 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.35 Total: -49.70 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -2.02 Total: -26.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 25.58 SS G_CDS: -0.66 Total: 24.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.14 -10.80 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.076 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds