Wall clock time and date at job start Fri Apr 10 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 S 1.65603 * 119.99955 * 2 1 4 4 O 1.42101 * 106.40028 * 311.46244 * 3 2 1 5 5 O 1.42094 * 106.40153 * 178.53874 * 3 2 1 6 6 N 1.65605 * 107.21762 * 64.99871 * 3 2 1 7 7 C 1.46501 * 119.99908 * 65.00077 * 6 3 2 8 8 C 1.53120 * 109.51851 * 144.99559 * 7 6 3 9 9 C 1.53045 * 109.27382 * 177.56064 * 8 7 6 10 10 N 1.46844 * 109.52143 * 300.82250 * 9 8 7 11 11 C 1.46906 * 110.99887 * 185.83959 * 10 9 8 12 12 C 1.53000 * 109.47072 * 170.00138 * 11 10 9 13 13 H 1.08998 * 109.47666 * 54.99810 * 12 11 10 14 14 C 1.53005 * 109.46913 * 294.99925 * 12 11 10 15 15 C 1.52998 * 109.46937 * 175.00313 * 12 11 10 16 16 C 1.50707 * 109.47006 * 184.99877 * 15 12 11 17 17 H 1.07996 * 119.99871 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99966 * 179.97438 * 16 15 12 19 19 N 1.31520 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99820 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47440 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46880 * 120.00542 * 20 18 16 23 23 H 1.48503 * 109.47137 * 240.00094 * 20 18 16 24 24 C 1.46853 * 111.20068 * 61.74346 * 10 9 8 25 25 C 1.53033 * 109.52262 * 298.25891 * 24 10 9 26 26 H 1.08991 * 109.47207 * 60.00011 * 1 2 3 27 27 H 1.08998 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46683 * 300.00186 * 1 2 3 29 29 H 0.96992 * 119.99904 * 179.97438 * 2 1 3 30 30 H 0.97001 * 119.99959 * 245.00207 * 6 3 2 31 31 H 1.08999 * 109.51890 * 24.87087 * 7 6 3 32 32 H 1.08996 * 109.49890 * 57.62537 * 8 7 6 33 33 H 1.08989 * 109.54077 * 297.51899 * 8 7 6 34 34 H 1.09000 * 109.46052 * 180.80838 * 9 8 7 35 35 H 1.08998 * 109.45499 * 60.82968 * 9 8 7 36 36 H 1.08993 * 109.47164 * 289.99991 * 11 10 9 37 37 H 1.08996 * 109.46920 * 50.00025 * 11 10 9 38 38 H 1.08995 * 109.47281 * 60.00455 * 14 12 11 39 39 H 1.09000 * 109.46871 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47528 * 300.00033 * 14 12 11 41 41 H 1.09002 * 109.46907 * 304.99730 * 15 12 11 42 42 H 1.09002 * 109.47546 * 64.99887 * 15 12 11 43 43 H 0.96993 * 119.99901 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46125 * 58.27453 * 24 10 9 45 45 H 1.09003 * 109.46462 * 178.23846 * 24 10 9 46 46 H 1.09007 * 109.50330 * 299.23709 * 25 24 10 47 47 H 1.08999 * 109.53502 * 179.13924 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 7 1.9592 2.1930 1.4336 7 6 2.3999 1.5975 2.6975 8 6 2.7875 2.7076 3.6783 9 6 3.1887 2.0822 5.0163 10 7 2.0645 1.3029 5.5504 11 6 2.3647 0.8019 6.8984 12 6 1.0952 0.2148 7.5186 13 1 0.6839 -0.5451 6.8541 14 6 0.0646 1.3275 7.7205 15 6 1.4335 -0.4183 8.8698 16 6 0.2107 -1.1032 9.4238 17 1 -0.7149 -1.0887 8.8676 18 6 0.2740 -1.7491 10.6403 19 7 1.4014 -1.7671 11.3174 20 14 -1.2418 -2.5974 11.3274 21 1 -2.3735 -2.4325 10.3802 22 1 -0.9586 -4.0434 11.5126 23 1 -1.5981 -1.9913 12.6354 24 6 1.7052 0.2018 4.6477 25 6 1.2598 0.7710 3.2988 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9500 -0.8400 0.0004 30 1 1.4718 3.0316 1.4365 31 1 3.2610 0.9544 2.5164 32 1 1.9379 3.3737 3.8282 33 1 3.6270 3.2737 3.2750 34 1 3.4515 2.8707 5.7215 35 1 4.0469 1.4268 4.8679 36 1 3.1300 0.0283 6.8364 37 1 2.7263 1.6220 7.5186 38 1 -0.1765 1.7785 6.7580 39 1 -0.8400 0.9091 8.1619 40 1 0.4757 2.0874 8.3850 41 1 2.2314 -1.1492 8.7389 42 1 1.7609 0.3570 9.5625 43 1 1.4461 -2.2218 12.1730 44 1 2.5704 -0.4448 4.5012 45 1 0.8906 -0.3755 5.0851 46 1 0.3861 1.4068 3.4427 47 1 1.0076 -0.0466 2.6235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:16 Heat of formation + Delta-G solvation = -121.953264 kcal Electronic energy + Delta-G solvation = -25884.492143 eV Core-core repulsion = 22226.876262 eV Total energy + Delta-G solvation = -3657.615881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34436 -38.36833 -37.62803 -36.99575 -35.89985 -35.63808 -34.07843 -31.79136 -31.44946 -28.77735 -27.01635 -26.80243 -25.11968 -24.17377 -23.31853 -21.15710 -20.73964 -20.37551 -19.05878 -18.51565 -18.44933 -17.77434 -16.85749 -16.49332 -16.13028 -15.96455 -15.66965 -15.58924 -15.00573 -14.84241 -14.61986 -14.56192 -14.24318 -14.01112 -13.79144 -13.38162 -13.32069 -13.27775 -13.20163 -13.12780 -12.84506 -12.75973 -12.58920 -12.50537 -12.30516 -12.18784 -12.09627 -12.00199 -11.83320 -11.42865 -11.31754 -11.02005 -10.83144 -10.54592 -10.52143 -10.39838 -9.16453 -8.15671 -6.24339 -0.39295 1.40957 1.41854 1.54386 1.90725 2.43383 2.59039 3.01292 3.18184 3.44679 3.70211 3.86071 4.00853 4.11501 4.22717 4.28378 4.34068 4.41300 4.49343 4.57072 4.59683 4.69723 4.72817 4.81668 4.88959 4.95413 4.98174 5.01067 5.04088 5.07329 5.09601 5.22323 5.25824 5.33397 5.46079 5.52736 5.55827 5.60230 5.85295 5.92629 6.00846 6.14929 6.20002 6.30125 6.35244 6.92540 7.44062 8.96625 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024297 B = 0.002544 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.152050 B =11002.012840 C =11613.867396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.124 6.124 3 S 2.811 3.189 4 O -1.012 7.012 5 O -1.016 7.016 6 N -1.109 6.109 7 C 0.151 3.849 8 C -0.111 4.111 9 C 0.052 3.948 10 N -0.533 5.533 11 C 0.072 3.928 12 C -0.071 4.071 13 H 0.057 0.943 14 C -0.111 4.111 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.062 0.938 18 C -0.004 4.004 19 N -0.937 5.937 20 Si 0.959 3.041 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.049 3.951 25 C -0.125 4.125 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.425 0.575 30 H 0.426 0.574 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.033 0.967 41 H -0.017 1.017 42 H -0.011 1.011 43 H 0.261 0.739 44 H 0.029 0.971 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 6.902 -23.165 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.887 5.887 3 S 2.816 3.184 4 O -0.995 6.995 5 O -0.999 6.999 6 N -0.871 5.871 7 C 0.043 3.957 8 C -0.150 4.150 9 C -0.076 4.076 10 N -0.257 5.257 11 C -0.056 4.056 12 C -0.090 4.090 13 H 0.075 0.925 14 C -0.168 4.168 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.785 3.215 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.080 4.080 25 C -0.165 4.165 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.262 0.738 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.873 7.494 -23.731 24.901 hybrid contribution 0.165 -1.375 1.261 1.873 sum -0.707 6.119 -22.469 23.298 Atomic orbital electron populations 1.21679 0.77273 1.05711 1.02281 1.55415 1.17039 1.24481 1.91789 1.00894 0.72197 0.72766 0.72520 1.93586 1.79473 1.70050 1.56410 1.93590 1.34307 1.84585 1.87415 1.55625 1.73495 1.36709 1.21256 1.20869 0.96533 0.95212 0.83046 1.21798 1.03091 0.97400 0.92754 1.22136 0.91381 0.97423 0.96700 1.61961 1.38347 1.23902 1.01540 1.22019 0.96182 0.97791 0.89616 1.21024 0.95108 0.96981 0.95853 0.92510 1.21456 0.97821 0.96940 1.00576 1.19031 0.95132 0.93884 0.92571 1.21672 0.97694 1.32795 1.04079 0.92003 1.25947 0.98978 0.97455 0.97669 1.70110 1.27670 1.45081 1.14924 0.85479 0.79754 0.77997 0.78319 1.18388 1.20691 1.20720 1.22159 1.00150 0.92522 0.93132 1.22128 0.99033 1.00391 0.94905 0.92064 0.87995 0.90957 0.74003 0.73775 0.89960 0.89513 0.89824 0.89995 0.95138 0.96431 0.91454 0.91298 0.94608 0.94743 0.99814 0.99297 0.93034 0.95322 0.90668 0.89654 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.85 127.77 1.39 1.98 16 2 N -1.12 -12.15 5.88 -206.53 -1.22 -13.36 16 3 S 2.81 47.36 6.16 -56.49 -0.35 47.01 16 4 O -1.01 -23.25 17.86 -128.00 -2.29 -25.53 16 5 O -1.02 -24.50 17.48 -128.00 -2.24 -26.74 16 6 N -1.11 -14.14 5.53 -169.06 -0.94 -15.08 16 7 C 0.15 2.27 2.88 45.07 0.13 2.40 16 8 C -0.11 -1.71 5.63 30.65 0.17 -1.54 16 9 C 0.05 1.06 5.46 86.33 0.47 1.53 16 10 N -0.53 -13.24 4.11 -896.34 -3.68 -16.92 16 11 C 0.07 2.32 4.35 86.30 0.38 2.70 16 12 C -0.07 -2.75 2.26 -10.79 -0.02 -2.78 16 13 H 0.06 2.20 6.22 -2.39 -0.01 2.18 16 14 C -0.11 -3.98 8.89 71.98 0.64 -3.34 16 15 C 0.03 1.61 4.45 29.85 0.13 1.75 16 16 C -0.52 -29.04 8.41 25.60 0.22 -28.82 16 17 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -56.84 13.29 21.45 0.28 -56.55 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.05 1.09 5.30 86.32 0.46 1.55 16 25 C -0.13 -1.92 5.70 30.64 0.17 -1.74 16 26 H 0.06 0.55 8.10 -2.39 -0.02 0.53 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.44 7.74 -2.39 -0.02 0.42 16 29 H 0.42 3.43 8.96 -96.75 -0.87 2.56 16 30 H 0.43 3.99 8.84 -96.74 -0.86 3.13 16 31 H 0.08 1.38 7.50 -2.39 -0.02 1.36 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.63 8.02 -2.39 -0.02 1.61 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 37 H 0.07 2.20 7.99 -2.39 -0.02 2.18 16 38 H 0.07 2.11 7.75 -2.39 -0.02 2.09 16 39 H 0.03 1.39 6.95 -2.39 -0.02 1.37 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 1.89 6.12 -2.39 -0.01 1.87 16 46 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.09 1.03 7.05 -2.39 -0.02 1.02 16 Total: -1.00 -74.00 378.81 -4.57 -78.56 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.76 Total: 8.82 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 4.59 Total: -26.07 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -5.55 Total: -101.91 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -4.52 Total: -52.27 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 47.36 SS G_CDS: -0.35 Total: 47.01 kcal Total: -74.00 -4.57 -78.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.389 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds