Wall clock time and date at job start Fri Apr 10 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47229 * 2 1 4 4 C 1.50707 * 109.46684 * 240.00383 * 2 1 3 5 5 H 1.07998 * 119.99741 * 245.01998 * 4 2 1 6 6 C 1.37878 * 120.00014 * 65.02104 * 4 2 1 7 7 N 1.31510 * 120.00297 * 7.50654 * 6 4 2 8 8 Si 1.86798 * 119.99796 * 187.51181 * 6 4 2 9 9 H 1.48499 * 109.47492 * 95.01056 * 8 6 4 10 10 H 1.48499 * 109.47323 * 215.01347 * 8 6 4 11 11 H 1.48500 * 109.47194 * 335.01113 * 8 6 4 12 12 N 1.46497 * 109.47438 * 120.00366 * 2 1 3 13 13 C 1.46500 * 119.99654 * 59.99553 * 12 2 1 14 14 S 1.65596 * 119.99794 * 239.99970 * 12 2 1 15 15 O 1.42102 * 106.40171 * 156.45868 * 14 12 2 16 16 O 1.42093 * 106.40561 * 23.54014 * 14 12 2 17 17 N 1.65601 * 107.21529 * 269.99757 * 14 12 2 18 18 C 1.46494 * 120.00296 * 65.00615 * 17 14 12 19 19 H 1.08999 * 110.01410 * 23.60070 * 18 17 14 20 20 C 1.54265 * 110.07146 * 262.18800 * 18 17 14 21 21 C 1.54886 * 104.19800 * 264.30331 * 20 18 17 22 22 C 1.54888 * 102.74464 * 322.05266 * 21 20 18 23 23 C 1.53870 * 110.03493 * 144.99959 * 18 17 14 24 24 H 1.08996 * 110.03428 * 0.04814 * 23 18 17 25 25 N 1.46905 * 110.02993 * 238.61268 * 23 18 17 26 26 C 1.46904 * 110.99796 * 64.75410 * 25 23 18 27 27 C 1.46897 * 111.00007 * 188.70189 * 25 23 18 28 28 H 1.09001 * 109.47288 * 179.68333 * 1 2 3 29 29 H 1.09009 * 109.46763 * 299.68206 * 1 2 3 30 30 H 1.08999 * 109.47536 * 59.67511 * 1 2 3 31 31 H 0.96998 * 120.00129 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47384 * 269.99777 * 13 12 2 33 33 H 1.08995 * 109.47493 * 30.00782 * 13 12 2 34 34 H 1.09004 * 109.46431 * 150.00013 * 13 12 2 35 35 H 0.97009 * 119.99689 * 244.99740 * 17 14 12 36 36 H 1.09011 * 110.48636 * 22.97897 * 20 18 17 37 37 H 1.09001 * 110.48962 * 145.48768 * 20 18 17 38 38 H 1.08995 * 110.76008 * 80.37056 * 21 20 18 39 39 H 1.09003 * 110.75454 * 203.74246 * 21 20 18 40 40 H 1.09000 * 110.49223 * 279.26191 * 22 21 20 41 41 H 1.09001 * 110.48453 * 156.62038 * 22 21 20 42 42 H 1.09004 * 109.47199 * 59.99557 * 26 25 23 43 43 H 1.08992 * 109.47556 * 179.97438 * 26 25 23 44 44 H 1.09005 * 109.46977 * 300.00300 * 26 25 23 45 45 H 1.09005 * 109.46954 * 67.58112 * 27 25 23 46 46 H 1.09004 * 109.47477 * 187.57889 * 27 25 23 47 47 H 1.09001 * 109.47619 * 307.58098 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5846 -1.6333 -1.1336 6 6 1.7866 -0.1819 -2.4802 7 7 1.2459 1.0114 -2.5948 8 14 2.2216 -1.1612 -4.0103 9 1 1.0247 -1.9045 -4.4793 10 1 2.6787 -0.2351 -5.0773 11 1 3.3074 -2.1224 -3.6907 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 16 2.9704 0.1141 2.2861 15 8 2.8229 -0.5647 3.5257 16 8 2.6904 1.4972 2.1192 17 7 4.5437 -0.1043 1.8177 18 6 5.0139 0.4530 0.5471 19 1 4.3831 1.2912 0.2512 20 6 4.9954 -0.6344 -0.5470 21 6 6.4441 -1.1820 -0.5629 22 6 7.2938 0.0926 -0.3337 23 6 6.4753 0.9151 0.6828 24 1 6.8350 0.7240 1.6938 25 7 6.5810 2.3472 0.3726 26 6 5.8457 3.1543 1.3554 27 6 7.9867 2.7663 0.2933 28 1 -0.3634 -1.0276 -0.0057 29 1 -0.3633 0.5089 0.8929 30 1 -0.3634 0.5189 -0.8870 31 1 1.0727 1.3830 -3.4739 32 1 0.7376 -2.1445 1.9992 33 1 1.5295 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9861 35 1 5.1541 -0.6012 2.3849 36 1 4.2915 -1.4251 -0.2872 37 1 4.7393 -0.1992 -1.5130 38 1 6.5955 -1.8976 0.2452 39 1 6.6762 -1.6326 -1.5279 40 1 7.4113 0.6455 -1.2657 41 1 8.2673 -0.1676 0.0819 42 1 6.2577 2.9806 2.3495 43 1 5.9408 4.2102 1.1025 44 1 4.7932 2.8709 1.3438 45 1 8.4559 2.3019 -0.5741 46 1 8.0377 3.8508 0.1969 47 1 8.5097 2.4570 1.1983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590585401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:21 Heat of formation + Delta-G solvation = -71.501409 kcal Electronic energy + Delta-G solvation = -28221.389321 eV Core-core repulsion = 24565.961197 eV Total energy + Delta-G solvation = -3655.428124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.17379 -36.64040 -36.15645 -35.36932 -35.20331 -32.86419 -32.54424 -29.14563 -28.10837 -27.59052 -26.34852 -25.49148 -25.12562 -22.86341 -20.80933 -20.30740 -19.65187 -18.68521 -17.20040 -16.79858 -16.40537 -16.23903 -15.69401 -15.00504 -14.70205 -14.49972 -14.04270 -13.77197 -13.52104 -13.45667 -13.26086 -12.69921 -12.36044 -12.17322 -12.12661 -11.96440 -11.78526 -11.68181 -11.51567 -11.43622 -11.41936 -11.19277 -11.07529 -10.99615 -10.86460 -10.72084 -10.61588 -10.56799 -10.40052 -10.22224 -10.16569 -9.94057 -9.24825 -8.99867 -8.43425 -8.18787 -7.94653 -6.08858 -4.12703 1.30366 3.25289 3.34321 3.34687 3.54573 4.08943 4.21293 4.37244 4.73961 4.86052 5.10374 5.23302 5.27016 5.29664 5.41746 5.55606 5.62764 5.66126 5.68337 5.79229 5.82446 5.89601 5.94801 5.98318 6.08294 6.17529 6.19342 6.25867 6.30818 6.35948 6.51723 6.65217 6.81748 6.83169 6.85588 7.02322 7.09990 7.19087 7.27019 7.33545 7.52497 7.64872 7.78682 7.97598 8.25927 8.88466 9.51099 10.98326 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.007308 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.909178 B = 3830.440264 C = 5128.265237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.266 3.734 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.885 3.115 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.781 3.219 15 O -1.004 7.004 16 O -0.981 6.981 17 N -1.126 6.126 18 C 0.159 3.841 19 H 0.108 0.892 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.117 4.117 23 C 0.078 3.922 24 H 0.046 0.954 25 N -0.536 5.536 26 C 0.016 3.984 27 C 0.025 3.975 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -2.007 4.918 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.713 3.287 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.790 3.210 15 O -0.988 6.988 16 O -0.964 6.964 17 N -0.884 5.884 18 C 0.052 3.948 19 H 0.126 0.874 20 C -0.164 4.164 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.032 4.032 24 H 0.064 0.936 25 N -0.260 5.260 26 C -0.132 4.132 27 C -0.123 4.123 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.922 -1.149 4.977 11.159 hybrid contribution 0.977 -1.063 -0.219 1.461 sum 10.899 -2.211 4.758 12.096 Atomic orbital electron populations 1.21984 0.98497 0.99454 0.99962 1.18745 0.91379 0.93196 0.80340 0.91808 1.21346 1.35862 1.08960 0.89976 0.91502 1.24860 0.95254 0.94546 0.98708 1.69939 1.43216 1.14886 1.23952 0.86694 0.78619 0.80081 0.83265 1.20932 1.21320 1.19709 1.57684 1.64552 1.21243 1.39792 1.21161 0.98883 0.82095 1.01734 1.01816 0.72765 0.73770 0.72622 1.93539 1.86086 1.76248 1.42951 1.93572 1.83910 1.32430 1.86523 1.56213 1.30451 1.70488 1.31215 1.21358 0.94562 0.96629 0.82300 0.87400 1.22935 0.95304 0.98513 0.99598 1.22529 0.96510 0.96399 1.01019 1.22466 0.97293 0.96328 0.99412 1.22651 0.95799 0.87487 0.97304 0.93625 1.62080 1.11968 1.03022 1.48958 1.22537 1.00609 0.97792 0.92304 1.22382 0.88755 1.00881 1.00304 0.94706 0.96678 0.90508 0.92709 0.94062 0.90227 0.93285 0.76387 0.89440 0.89415 0.92201 0.91725 0.90273 0.92387 0.96185 0.91508 0.89486 0.91260 0.91682 0.96128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.01 37.16 0.33 -2.83 16 2 C 0.27 6.12 2.49 -69.08 -0.17 5.94 16 3 H 0.06 1.66 6.88 -51.93 -0.36 1.30 16 4 C -0.52 -12.23 6.02 -34.44 -0.21 -12.44 16 5 H 0.07 1.51 5.73 -52.49 -0.30 1.21 16 6 C 0.07 1.73 5.23 -17.82 -0.09 1.63 16 7 N -0.88 -23.37 12.04 55.43 0.67 -22.70 16 8 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 N -0.99 -19.60 3.12 -115.85 -0.36 -19.96 16 13 C 0.11 1.85 9.28 59.85 0.56 2.40 16 14 S 2.78 53.50 6.07 -107.50 -0.65 52.84 16 15 O -1.00 -20.50 17.21 -57.18 -0.98 -21.49 16 16 O -0.98 -21.80 15.68 -57.18 -0.90 -22.69 16 17 N -1.13 -17.73 5.46 -3.94 -0.02 -17.75 16 18 C 0.16 2.61 2.75 -66.82 -0.18 2.42 16 19 H 0.11 2.13 6.11 -51.93 -0.32 1.81 16 20 C -0.12 -2.06 5.19 -25.07 -0.13 -2.19 16 21 C -0.13 -1.67 6.91 -24.74 -0.17 -1.84 16 22 C -0.12 -1.45 5.29 -25.07 -0.13 -1.58 16 23 C 0.08 1.09 2.41 -66.59 -0.16 0.93 16 24 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 25 N -0.54 -7.68 4.77 -241.82 -1.15 -8.84 16 26 C 0.02 0.23 9.30 60.07 0.56 0.79 16 27 C 0.03 0.28 9.12 60.06 0.55 0.83 16 28 H 0.03 0.73 7.68 -51.93 -0.40 0.33 16 29 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.08 1.90 6.79 -51.93 -0.35 1.54 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.36 6.93 -51.93 -0.36 1.00 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.40 5.30 8.67 -34.47 -0.30 5.00 16 36 H 0.09 1.53 6.20 -51.92 -0.32 1.21 16 37 H 0.09 1.66 7.89 -51.93 -0.41 1.25 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.02 7.33 -51.93 -0.38 0.64 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 44 H 0.09 1.51 6.24 -51.93 -0.32 1.19 16 45 H 0.07 0.73 6.86 -51.93 -0.36 0.37 16 46 H 0.06 0.67 7.99 -51.93 -0.41 0.26 16 47 H 0.02 0.22 8.11 -51.93 -0.42 -0.21 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -28.67 368.36 -10.04 -38.70 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.91 Total: 7.73 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.75 Total: -5.93 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -0.87 Total: -69.25 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.88 Total: -44.18 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 53.50 SS G_CDS: -0.65 Total: 52.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.67 -10.04 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590585401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.797 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds