Wall clock time and date at job start Fri Apr 10 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47229 * 2 1 4 4 C 1.50707 * 109.46684 * 240.00383 * 2 1 3 5 5 H 1.07998 * 119.99741 * 245.01998 * 4 2 1 6 6 C 1.37878 * 120.00014 * 65.02104 * 4 2 1 7 7 N 1.31510 * 120.00297 * 7.50654 * 6 4 2 8 8 Si 1.86798 * 119.99796 * 187.51181 * 6 4 2 9 9 H 1.48499 * 109.47492 * 95.01056 * 8 6 4 10 10 H 1.48499 * 109.47323 * 215.01347 * 8 6 4 11 11 H 1.48500 * 109.47194 * 335.01113 * 8 6 4 12 12 N 1.46497 * 109.47438 * 120.00366 * 2 1 3 13 13 C 1.46500 * 119.99654 * 59.99553 * 12 2 1 14 14 S 1.65596 * 119.99794 * 239.99970 * 12 2 1 15 15 O 1.42102 * 106.40171 * 156.45868 * 14 12 2 16 16 O 1.42093 * 106.40561 * 23.54014 * 14 12 2 17 17 N 1.65601 * 107.21529 * 269.99757 * 14 12 2 18 18 C 1.46494 * 120.00296 * 65.00615 * 17 14 12 19 19 H 1.08999 * 110.01410 * 23.60070 * 18 17 14 20 20 C 1.54265 * 110.07146 * 262.18800 * 18 17 14 21 21 C 1.54886 * 104.19800 * 264.30331 * 20 18 17 22 22 C 1.54888 * 102.74464 * 322.05266 * 21 20 18 23 23 C 1.53870 * 110.03493 * 144.99959 * 18 17 14 24 24 H 1.08996 * 110.03428 * 0.04814 * 23 18 17 25 25 N 1.46905 * 110.02993 * 238.61268 * 23 18 17 26 26 C 1.46904 * 110.99796 * 64.75410 * 25 23 18 27 27 C 1.46897 * 111.00007 * 188.70189 * 25 23 18 28 28 H 1.09001 * 109.47288 * 179.68333 * 1 2 3 29 29 H 1.09009 * 109.46763 * 299.68206 * 1 2 3 30 30 H 1.08999 * 109.47536 * 59.67511 * 1 2 3 31 31 H 0.96998 * 120.00129 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47384 * 269.99777 * 13 12 2 33 33 H 1.08995 * 109.47493 * 30.00782 * 13 12 2 34 34 H 1.09004 * 109.46431 * 150.00013 * 13 12 2 35 35 H 0.97009 * 119.99689 * 244.99740 * 17 14 12 36 36 H 1.09011 * 110.48636 * 22.97897 * 20 18 17 37 37 H 1.09001 * 110.48962 * 145.48768 * 20 18 17 38 38 H 1.08995 * 110.76008 * 80.37056 * 21 20 18 39 39 H 1.09003 * 110.75454 * 203.74246 * 21 20 18 40 40 H 1.09000 * 110.49223 * 279.26191 * 22 21 20 41 41 H 1.09001 * 110.48453 * 156.62038 * 22 21 20 42 42 H 1.09004 * 109.47199 * 59.99557 * 26 25 23 43 43 H 1.08992 * 109.47556 * 179.97438 * 26 25 23 44 44 H 1.09005 * 109.46977 * 300.00300 * 26 25 23 45 45 H 1.09005 * 109.46954 * 67.58112 * 27 25 23 46 46 H 1.09004 * 109.47477 * 187.57889 * 27 25 23 47 47 H 1.09001 * 109.47619 * 307.58098 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5846 -1.6333 -1.1336 6 6 1.7866 -0.1819 -2.4802 7 7 1.2459 1.0114 -2.5948 8 14 2.2216 -1.1612 -4.0103 9 1 1.0247 -1.9045 -4.4793 10 1 2.6787 -0.2351 -5.0773 11 1 3.3074 -2.1224 -3.6907 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 16 2.9704 0.1141 2.2861 15 8 2.8229 -0.5647 3.5257 16 8 2.6904 1.4972 2.1192 17 7 4.5437 -0.1043 1.8177 18 6 5.0139 0.4530 0.5471 19 1 4.3831 1.2912 0.2512 20 6 4.9954 -0.6344 -0.5470 21 6 6.4441 -1.1820 -0.5629 22 6 7.2938 0.0926 -0.3337 23 6 6.4753 0.9151 0.6828 24 1 6.8350 0.7240 1.6938 25 7 6.5810 2.3472 0.3726 26 6 5.8457 3.1543 1.3554 27 6 7.9867 2.7663 0.2933 28 1 -0.3634 -1.0276 -0.0057 29 1 -0.3633 0.5089 0.8929 30 1 -0.3634 0.5189 -0.8870 31 1 1.0727 1.3830 -3.4739 32 1 0.7376 -2.1445 1.9992 33 1 1.5295 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9861 35 1 5.1541 -0.6012 2.3849 36 1 4.2915 -1.4251 -0.2872 37 1 4.7393 -0.1992 -1.5130 38 1 6.5955 -1.8976 0.2452 39 1 6.6762 -1.6326 -1.5279 40 1 7.4113 0.6455 -1.2657 41 1 8.2673 -0.1676 0.0819 42 1 6.2577 2.9806 2.3495 43 1 5.9408 4.2102 1.1025 44 1 4.7932 2.8709 1.3438 45 1 8.4559 2.3019 -0.5741 46 1 8.0377 3.8508 0.1969 47 1 8.5097 2.4570 1.1983 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590585401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:21 Heat of formation + Delta-G solvation = -92.849033 kcal Electronic energy + Delta-G solvation = -28222.315024 eV Core-core repulsion = 24565.961197 eV Total energy + Delta-G solvation = -3656.353827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33838 -38.28849 -37.84302 -36.87921 -36.53195 -34.38768 -34.11167 -30.93604 -29.27993 -28.65526 -27.55770 -27.05292 -26.94905 -23.96926 -22.57270 -21.51417 -20.89863 -20.14770 -18.75007 -18.33364 -18.22321 -17.63770 -16.94040 -16.59310 -16.19230 -15.75283 -15.25660 -15.10792 -14.90937 -14.83893 -14.69839 -14.37853 -13.72139 -13.66882 -13.40440 -13.27737 -13.25584 -13.18025 -13.12297 -12.90851 -12.84090 -12.76112 -12.59039 -12.57247 -12.28106 -12.19950 -12.12789 -11.89115 -11.81670 -11.71608 -11.53468 -11.37182 -11.03058 -10.41002 -10.32745 -9.60477 -9.23908 -8.01117 -6.08689 -0.25889 1.48338 1.52404 1.59291 2.03724 2.52483 2.65345 3.04422 3.31041 3.45624 3.59665 3.82695 4.11739 4.20354 4.30296 4.40459 4.45957 4.54715 4.57585 4.61072 4.73713 4.76030 4.77329 4.84084 4.84534 4.89361 4.97467 5.03287 5.08054 5.09873 5.13815 5.18281 5.22587 5.30409 5.40101 5.54056 5.62882 5.68910 5.76115 5.92101 6.07558 6.12784 6.22044 6.28864 6.37152 6.98266 7.57717 9.06348 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.007308 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.909178 B = 3830.440264 C = 5128.265237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.507 4.507 5 H 0.078 0.922 6 C 0.024 3.976 7 N -0.919 5.919 8 Si 0.940 3.060 9 H -0.285 1.285 10 H -0.296 1.296 11 H -0.257 1.257 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.795 3.205 15 O -1.012 7.012 16 O -1.015 7.015 17 N -1.108 6.108 18 C 0.161 3.839 19 H 0.067 0.933 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.108 4.108 23 C 0.080 3.920 24 H 0.060 0.940 25 N -0.557 5.557 26 C 0.019 3.981 27 C 0.026 3.974 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.052 0.948 31 H 0.259 0.741 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -3.952 5.398 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.175 4.175 7 N -0.559 5.559 8 Si 0.767 3.233 9 H -0.211 1.211 10 H -0.222 1.222 11 H -0.181 1.181 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.804 3.196 15 O -0.996 6.996 16 O -0.999 6.999 17 N -0.870 5.870 18 C 0.054 3.946 19 H 0.085 0.915 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.030 4.030 24 H 0.077 0.923 25 N -0.281 5.281 26 C -0.129 4.129 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.364 -3.131 5.484 13.883 hybrid contribution 0.223 -0.433 -0.308 0.576 sum 12.587 -3.564 5.176 14.069 Atomic orbital electron populations 1.21891 0.98453 1.00028 0.98999 1.18399 0.91348 0.91704 0.81569 0.95572 1.21528 1.34560 1.08682 0.89881 0.90428 1.25505 0.95586 0.95134 1.01309 1.70078 1.45169 1.16529 1.24087 0.85821 0.78555 0.78866 0.80076 1.21089 1.22245 1.18088 1.57562 1.65126 1.22368 1.38616 1.21381 1.00293 0.80491 1.02358 1.01240 0.73313 0.72860 0.72215 1.93520 1.86570 1.76189 1.43357 1.93535 1.84727 1.34711 1.86890 1.55772 1.29384 1.70519 1.31333 1.21272 0.95713 0.95468 0.82196 0.91458 1.22802 0.97774 0.98017 0.97824 1.22501 0.93708 0.97067 1.02299 1.22441 0.98128 0.95312 0.98767 1.22647 0.93951 0.87741 0.98684 0.92272 1.62045 1.13947 1.03139 1.49014 1.22436 0.98755 0.98510 0.93213 1.22440 0.86842 1.01533 1.01348 0.93197 0.96294 0.92860 0.93187 0.93247 0.90082 0.90853 0.74397 0.90521 0.92548 0.90200 0.90961 0.90865 0.89383 0.95106 0.90475 0.93027 0.90219 0.90972 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 9.01 71.98 0.65 -5.57 16 2 C 0.27 12.89 2.49 44.25 0.11 13.00 16 3 H 0.03 1.45 6.88 -2.39 -0.02 1.43 16 4 C -0.51 -23.94 6.02 25.60 0.15 -23.79 16 5 H 0.08 3.45 5.73 -2.91 -0.02 3.43 16 6 C 0.02 1.23 5.23 84.66 0.44 1.67 16 7 N -0.92 -50.48 12.04 21.45 0.26 -50.22 16 8 Si 0.94 40.28 29.54 68.60 2.03 42.31 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 12 N -0.99 -39.23 3.12 -520.45 -1.62 -40.86 16 13 C 0.10 3.27 9.28 127.77 1.19 4.45 16 14 S 2.79 107.64 6.07 -56.49 -0.34 107.29 16 15 O -1.01 -40.17 17.21 -128.00 -2.20 -42.37 16 16 O -1.02 -46.89 15.68 -128.00 -2.01 -48.90 16 17 N -1.11 -33.99 5.46 -166.39 -0.91 -34.89 16 18 C 0.16 5.27 2.75 45.71 0.13 5.39 16 19 H 0.07 2.80 6.11 -2.39 -0.01 2.79 16 20 C -0.12 -4.03 5.19 31.67 0.16 -3.87 16 21 C -0.12 -2.76 6.91 31.88 0.22 -2.54 16 22 C -0.11 -2.35 5.29 31.67 0.17 -2.18 16 23 C 0.08 2.09 2.41 45.64 0.11 2.20 16 24 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 25 N -0.56 -15.38 4.77 -918.97 -4.39 -19.77 16 26 C 0.02 0.56 9.30 127.69 1.19 1.75 16 27 C 0.03 0.52 9.12 127.69 1.16 1.69 16 28 H 0.05 2.10 7.68 -2.39 -0.02 2.09 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 2.71 6.79 -2.39 -0.02 2.70 16 31 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 2.62 6.93 -2.39 -0.02 2.60 16 34 H 0.07 2.02 7.79 -2.38 -0.02 2.00 16 35 H 0.42 10.09 8.67 -96.74 -0.84 9.26 16 36 H 0.08 2.60 6.20 -2.38 -0.01 2.59 16 37 H 0.06 2.17 7.89 -2.39 -0.02 2.15 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.70 7.33 -2.39 -0.02 1.68 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 44 H 0.05 1.88 6.24 -2.38 -0.01 1.86 16 45 H 0.08 1.44 6.86 -2.38 -0.02 1.42 16 46 H 0.07 1.34 7.99 -2.39 -0.02 1.32 16 47 H 0.03 0.59 8.11 -2.39 -0.02 0.57 16 Total: -1.00 -63.26 368.36 -3.39 -66.65 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.12 Total: 28.56 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.68 Total: -7.80 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -6.66 Total: -145.74 kcal Atomic # 8 Polarization: -87.06 SS G_CDS: -4.21 Total: -91.27 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 107.64 SS G_CDS: -0.34 Total: 107.29 kcal Total: -63.26 -3.39 -66.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590585401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.202 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds