Wall clock time and date at job start Fri Apr 10 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99966 * 2 1 4 4 C 1.39675 * 119.99622 * 179.72113 * 2 1 3 5 5 C 1.38929 * 120.07054 * 179.72210 * 4 2 1 6 6 C 1.38083 * 119.92183 * 179.79236 * 5 4 2 7 7 C 1.38302 * 120.07722 * 0.48493 * 6 5 4 8 8 C 1.38266 * 120.14800 * 359.74768 * 7 6 5 9 9 C 1.50699 * 119.96409 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47114 * 270.02418 * 9 8 7 11 11 C 1.50699 * 109.47114 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00060 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99681 * 179.97438 * 13 11 10 15 15 C 1.50709 * 109.46984 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99937 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99888 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99658 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00014 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99704 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99767 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00112 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47013 * 89.99966 * 22 20 18 24 24 H 1.48504 * 109.47238 * 209.99989 * 22 20 18 25 25 H 1.48500 * 109.47421 * 330.00376 * 22 20 18 26 26 C 1.38130 * 120.07555 * 0.02562 * 8 7 6 27 27 H 1.09001 * 109.47091 * 270.28179 * 1 2 3 28 28 H 1.09004 * 109.46622 * 30.27737 * 1 2 3 29 29 H 1.08997 * 109.47201 * 150.27440 * 1 2 3 30 30 H 1.09009 * 109.46732 * 269.72379 * 3 2 1 31 31 H 1.08998 * 109.47268 * 29.71742 * 3 2 1 32 32 H 1.08996 * 109.47244 * 149.72315 * 3 2 1 33 33 H 1.08000 * 120.04161 * 0.02562 * 5 4 2 34 34 H 1.08004 * 119.96090 * 180.21469 * 6 5 4 35 35 H 1.08001 * 119.92993 * 179.76342 * 7 6 5 36 36 H 1.09001 * 109.46931 * 30.01984 * 9 8 7 37 37 H 1.08994 * 109.47413 * 150.02171 * 9 8 7 38 38 H 1.09006 * 109.47303 * 299.99771 * 10 9 8 39 39 H 1.09004 * 109.47609 * 59.99911 * 10 9 8 40 40 H 0.97000 * 120.00028 * 359.97438 * 13 11 10 41 41 H 1.08992 * 109.47132 * 299.99894 * 14 13 11 42 42 H 1.08999 * 109.46958 * 60.00218 * 14 13 11 43 43 H 0.96998 * 120.00378 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99955 * 180.02562 * 21 20 18 45 45 H 1.07994 * 120.03672 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2097 0.0059 5 6 3.5526 -1.2115 0.0001 6 6 4.2399 -2.4091 0.0102 7 6 3.5468 -3.6059 0.0161 8 6 2.1642 -3.6077 0.0170 9 6 1.4132 -4.9142 0.0228 10 6 1.1586 -5.3625 -1.4177 11 6 0.4081 -6.6694 -1.4119 12 8 0.1070 -7.1911 -0.3592 13 7 0.0725 -7.2589 -2.5765 14 6 -0.6565 -8.5296 -2.5708 15 6 -0.9075 -8.9712 -3.9897 16 8 -0.5154 -8.2915 -4.9147 17 7 -1.5675 -10.1212 -4.2309 18 6 -1.7952 -10.5231 -5.5217 19 1 -1.4461 -9.9179 -6.3452 20 6 -2.4752 -11.7091 -5.7703 21 7 -2.6940 -12.0941 -7.0076 22 14 -3.0784 -12.7562 -4.3458 23 1 -4.4526 -12.3369 -3.9704 24 1 -3.0901 -14.1847 -4.7517 25 1 -2.1720 -12.5794 -3.1829 26 6 1.4704 -2.4133 0.0116 27 1 -0.3633 0.0051 1.0277 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5095 30 1 2.3835 1.5809 -1.0278 31 1 1.6063 2.0296 0.5094 32 1 3.1478 1.1397 0.5181 33 1 4.0945 -0.2773 -0.0086 34 1 5.3199 -2.4112 0.0092 35 1 4.0868 -4.5413 0.0202 36 1 2.0039 -5.6706 0.5397 37 1 0.4607 -4.7836 0.5364 38 1 0.5678 -4.6062 -1.9346 39 1 2.1111 -5.4932 -1.9313 40 1 0.3137 -6.8418 -3.4184 41 1 -0.0653 -9.2854 -2.0539 42 1 -1.6092 -8.3996 -2.0573 43 1 -1.8807 -10.6650 -3.4912 44 1 -3.1690 -12.9218 -7.1811 45 1 0.3905 -2.4154 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344183983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:11 Heat of formation + Delta-G solvation = -42.593127 kcal Electronic energy + Delta-G solvation = -25102.371449 eV Core-core repulsion = 21312.752931 eV Total energy + Delta-G solvation = -3789.618519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07968 -39.54591 -38.31688 -36.76211 -34.54783 -33.83341 -33.71578 -31.81359 -30.72737 -29.97410 -28.65174 -27.65307 -25.10575 -24.88902 -23.70828 -21.81000 -20.46688 -20.05375 -19.59777 -18.61204 -17.61550 -16.97380 -16.25660 -15.79182 -15.70385 -15.61267 -15.40433 -15.32160 -14.83059 -14.65257 -14.30388 -13.97865 -13.84821 -13.35775 -13.13762 -13.00828 -12.97734 -12.90158 -12.49101 -12.41309 -12.21064 -12.15625 -12.01492 -11.97608 -11.59719 -11.24399 -11.09807 -10.90624 -10.65125 -10.07424 -10.05155 -9.76742 -9.70753 -8.89239 -8.87595 -8.77907 -8.31407 -7.53692 -6.41629 -3.94227 1.24322 1.44614 2.78477 2.80949 2.98950 3.03561 3.11556 3.31174 3.55504 3.71708 4.02785 4.49593 4.56246 4.61917 4.70336 4.84193 4.87700 4.95763 5.01957 5.04376 5.13165 5.17118 5.22009 5.27406 5.32664 5.34789 5.44326 5.49109 5.54317 5.69825 5.78375 5.79925 5.82401 5.85775 6.02207 6.12346 6.37394 6.57000 6.58746 6.68880 6.94475 7.23731 7.43222 7.75000 7.99568 8.37271 8.46065 8.80812 9.28956 9.62588 10.70517 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.001882 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.214301 B =14870.935038 C =15118.652532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.641 5.641 3 C 0.095 3.905 4 C 0.213 3.787 5 C -0.203 4.203 6 C -0.071 4.071 7 C -0.173 4.173 8 C -0.033 4.033 9 C -0.065 4.065 10 C -0.132 4.132 11 C 0.511 3.489 12 O -0.552 6.552 13 N -0.709 5.709 14 C 0.106 3.894 15 C 0.437 3.563 16 O -0.579 6.579 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C -0.193 4.193 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.374 0.626 44 H 0.276 0.724 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 22.769 16.753 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.049 4.049 4 C 0.112 3.888 5 C -0.226 4.226 6 C -0.090 4.090 7 C -0.193 4.193 8 C -0.033 4.033 9 C -0.102 4.102 10 C -0.172 4.172 11 C 0.298 3.702 12 O -0.430 6.430 13 N -0.364 5.364 14 C -0.022 4.022 15 C 0.223 3.777 16 O -0.463 6.463 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.215 4.215 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.360 22.843 16.687 29.797 hybrid contribution -0.492 -0.745 0.480 1.014 sum 8.869 22.098 17.167 29.354 Atomic orbital electron populations 1.21637 0.79497 1.02776 1.01135 1.46300 1.04986 1.03131 1.80902 1.21604 0.97191 0.84980 1.01087 1.17805 0.91204 0.85569 0.94183 1.20638 0.92050 0.98571 1.11319 1.20862 0.99353 0.91913 0.96861 1.20853 0.93536 0.98010 1.06909 1.19652 0.93615 0.94131 0.95937 1.20340 1.00849 0.93561 0.95499 1.21605 1.01704 0.94895 0.98991 1.20655 0.79496 0.86633 0.83453 1.90682 1.55416 1.65798 1.31131 1.45756 1.57581 1.23417 1.09599 1.20969 0.97839 0.86801 0.96614 1.19665 0.84543 0.83750 0.89693 1.90540 1.55411 1.55249 1.45135 1.42129 1.50566 1.20189 1.08518 1.19445 1.34799 1.06662 0.82989 0.86081 1.25071 0.97108 0.96990 0.96759 1.69619 1.39947 1.23395 1.18331 0.86666 0.79860 0.80995 0.81940 1.19395 1.19965 1.19236 1.20574 0.99577 0.90553 1.10780 0.93452 0.91628 0.91100 0.93461 0.91699 0.91387 0.86348 0.86265 0.86311 0.90025 0.90258 0.88733 0.88560 0.74958 0.89771 0.89792 0.79247 0.91380 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.19 59.85 0.61 1.19 16 2 N -0.64 -5.11 3.41 -187.54 -0.64 -5.75 16 3 C 0.09 0.52 10.18 59.85 0.61 1.13 16 4 C 0.21 2.06 6.55 -83.79 -0.55 1.51 16 5 C -0.20 -1.84 9.20 -39.38 -0.36 -2.20 16 6 C -0.07 -0.64 10.04 -39.61 -0.40 -1.03 16 7 C -0.17 -1.68 9.70 -39.55 -0.38 -2.06 16 8 C -0.03 -0.33 5.13 -104.65 -0.54 -0.87 16 9 C -0.06 -0.68 4.63 -27.88 -0.13 -0.81 16 10 C -0.13 -1.42 5.68 -27.88 -0.16 -1.57 16 11 C 0.51 7.42 7.83 -10.98 -0.09 7.33 16 12 O -0.55 -9.62 15.98 5.56 0.09 -9.53 16 13 N -0.71 -11.08 5.53 -61.47 -0.34 -11.42 16 14 C 0.11 1.82 6.15 -5.19 -0.03 1.79 16 15 C 0.44 9.60 7.85 -10.98 -0.09 9.52 16 16 O -0.58 -14.60 15.24 5.55 0.08 -14.51 16 17 N -0.58 -13.40 5.09 -10.96 -0.06 -13.46 16 18 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 20 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 21 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 22 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 C -0.19 -1.93 8.86 -39.38 -0.35 -2.27 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.07 -51.93 -0.42 -0.10 16 29 H 0.07 0.46 6.20 -51.93 -0.32 0.14 16 30 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 32 H 0.07 0.35 6.22 -51.93 -0.32 0.02 16 33 H 0.12 0.86 6.16 -52.49 -0.32 0.54 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.87 8.04 -51.93 -0.42 0.46 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.41 6.35 7.44 -40.82 -0.30 6.05 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 44 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 1.10 6.14 -52.49 -0.32 0.78 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -33.41 376.14 -7.67 -41.08 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.44 Total: 13.75 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.10 Total: 4.05 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.26 Total: -54.78 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -7.67 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344183983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.512 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds