Wall clock time and date at job start Fri Apr 10 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00318 * 2 1 4 4 C 1.50700 * 109.47031 * 274.99775 * 3 2 1 5 5 H 1.08004 * 120.00035 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00166 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99999 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99789 * 359.97438 * 6 4 3 9 9 H 1.48491 * 109.47036 * 90.00192 * 8 6 4 10 10 H 1.48505 * 109.46801 * 209.99979 * 8 6 4 11 11 H 1.48496 * 109.46881 * 329.99796 * 8 6 4 12 12 S 1.65604 * 119.99660 * 179.97438 * 2 1 3 13 13 O 1.42093 * 106.40105 * 156.46583 * 12 2 1 14 14 O 1.42102 * 106.40436 * 23.54105 * 12 2 1 15 15 N 1.65609 * 107.21738 * 270.00162 * 12 2 1 16 16 C 1.46503 * 119.99759 * 65.00036 * 15 12 2 17 17 C 1.53000 * 109.46854 * 165.00276 * 16 15 12 18 18 C 1.52996 * 109.46955 * 185.00162 * 17 16 15 19 19 C 1.53000 * 109.46955 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47512 * 59.99584 * 19 18 17 21 21 C 1.53006 * 109.46646 * 59.99998 * 20 19 18 22 22 N 1.46902 * 109.46626 * 174.99983 * 21 20 19 23 23 C 1.52996 * 109.47350 * 300.00174 * 20 19 18 24 24 C 1.52997 * 109.47512 * 64.99746 * 17 16 15 25 25 H 1.08994 * 109.47494 * 270.00083 * 1 2 3 26 26 H 1.09000 * 109.46543 * 30.00685 * 1 2 3 27 27 H 1.09003 * 109.46855 * 149.99871 * 1 2 3 28 28 H 1.09002 * 109.47094 * 34.99166 * 3 2 1 29 29 H 1.08995 * 109.47156 * 154.99727 * 3 2 1 30 30 H 0.97002 * 119.99857 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99668 * 245.00644 * 15 12 2 32 32 H 1.09000 * 109.47025 * 45.00451 * 16 15 12 33 33 H 1.08994 * 109.46967 * 285.00034 * 16 15 12 34 34 H 1.09002 * 109.47044 * 305.00033 * 17 16 15 35 35 H 1.08997 * 109.47474 * 59.99903 * 18 17 16 36 36 H 1.09002 * 109.47139 * 299.99813 * 18 17 16 37 37 H 1.09002 * 109.47044 * 299.99871 * 19 18 17 38 38 H 1.09004 * 109.47376 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47175 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.46955 * 295.00330 * 21 20 19 41 41 H 1.09000 * 109.47050 * 55.00158 * 21 20 19 42 42 H 1.00900 * 110.99481 * 180.02562 * 22 21 20 43 43 H 1.00904 * 111.00423 * 303.95194 * 22 21 20 44 44 H 1.08997 * 109.47474 * 179.97438 * 23 20 19 45 45 H 1.09002 * 109.46922 * 300.00179 * 23 20 19 46 46 H 1.09004 * 109.47394 * 300.00717 * 24 17 16 47 47 H 1.09002 * 109.46731 * 60.00096 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9290 1.1933 -2.2332 6 6 2.9999 2.9507 -1.6664 7 7 3.1260 3.3841 -2.9017 8 14 3.7128 3.9408 -0.2519 9 1 5.1099 3.5063 0.0017 10 1 3.6989 5.3840 -0.6015 11 1 2.8961 3.7192 0.9684 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5438 14 8 1.4113 -2.4068 -0.5434 15 7 2.5380 -1.8581 1.5827 16 6 1.3944 -2.1768 2.4412 17 6 1.8873 -2.8833 3.7056 18 6 0.6861 -3.3270 4.5429 19 6 1.1789 -4.0341 5.8071 20 6 2.0436 -3.0728 6.6250 21 6 1.2142 -1.8479 7.0161 22 7 2.0060 -0.9826 7.9005 23 6 3.2448 -2.6291 5.7877 24 6 2.7516 -1.9215 4.5233 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6501 2.0043 0.5893 29 1 3.1857 1.1176 0.4343 30 1 3.5889 4.2180 -3.0782 31 1 3.4386 -1.8952 1.9409 32 1 0.7078 -2.8309 1.9037 33 1 0.8792 -1.2566 2.7165 34 1 2.4784 -3.7558 3.4274 35 1 0.0703 -4.0123 3.9604 36 1 0.0950 -2.4545 4.8212 37 1 1.7698 -4.9066 5.5284 38 1 0.3232 -4.3506 6.4035 39 1 2.3943 -3.5764 7.5258 40 1 0.9378 -1.2947 6.1186 41 1 0.3123 -2.1709 7.5361 42 1 1.4797 -0.1662 8.1734 43 1 2.3291 -1.4913 8.7098 44 1 3.8606 -1.9439 6.3702 45 1 3.8356 -3.5016 5.5090 46 1 3.6074 -1.6053 3.9268 47 1 2.1605 -1.0490 4.8016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345194340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:14 Heat of formation + Delta-G solvation = -96.698473 kcal Electronic energy + Delta-G solvation = -26367.595430 eV Core-core repulsion = 22711.074678 eV Total energy + Delta-G solvation = -3656.520751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76546 -36.66606 -35.93435 -35.58729 -35.17981 -33.67431 -32.36131 -30.93750 -30.60942 -28.37242 -25.88437 -25.13467 -24.28644 -22.80616 -21.89788 -21.22456 -19.01781 -18.73929 -17.31799 -16.93153 -16.70034 -16.47673 -16.06585 -15.43744 -15.24067 -14.90676 -14.65249 -14.23560 -14.04528 -13.74706 -13.55236 -13.22054 -13.01848 -12.84002 -12.53680 -12.37712 -12.34164 -12.23215 -11.92502 -11.71173 -11.47388 -11.35292 -11.32192 -11.28869 -11.19828 -11.19298 -10.65281 -10.43450 -10.33758 -10.26887 -10.24778 -10.16606 -9.54329 -9.30232 -8.98707 -8.57570 -8.10248 -6.06426 -4.05688 1.19526 3.28850 3.34306 3.35740 3.50215 4.11928 4.16983 4.33174 4.40122 4.50652 4.58355 4.79947 4.89495 4.97770 5.04435 5.11504 5.22126 5.25038 5.31590 5.35802 5.40964 5.42313 5.52850 5.53795 5.60215 5.71930 5.75908 5.91106 5.92320 5.96732 5.99191 6.06281 6.15909 6.21931 6.28146 6.35138 6.46956 6.73948 6.79274 7.04598 7.07883 7.17938 7.45573 7.60099 8.50914 8.98461 9.52635 11.07184 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003737 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.343474 B = 7491.299209 C = 8534.869392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.991 5.991 3 C 0.228 3.772 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.783 3.217 13 O -0.963 6.963 14 O -0.995 6.995 15 N -1.134 6.134 16 C 0.124 3.876 17 C -0.094 4.094 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.086 4.086 21 C 0.060 3.940 22 N -0.849 5.849 23 C -0.106 4.106 24 C -0.116 4.116 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.411 0.589 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.021 0.979 42 H 0.341 0.659 43 H 0.337 0.663 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -12.753 22.910 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.832 5.832 3 C 0.105 3.895 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.790 3.210 13 O -0.947 6.947 14 O -0.978 6.978 15 N -0.894 5.894 16 C -0.003 4.003 17 C -0.114 4.114 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.070 4.070 22 N -0.378 5.378 23 C -0.143 4.143 24 C -0.154 4.154 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.895 -13.005 21.318 25.447 hybrid contribution -0.077 0.709 1.806 1.942 sum -4.972 -12.296 23.124 26.657 Atomic orbital electron populations 1.21396 0.79817 1.03929 1.00129 1.57359 1.14403 1.22556 1.88929 1.19415 0.90835 0.80747 0.98521 1.21396 1.36835 1.07007 0.91905 0.90442 1.24877 0.95368 0.97211 0.95548 1.69900 1.42607 1.21996 1.18873 0.86910 0.80426 0.79677 0.83038 1.19783 1.20980 1.18950 1.01912 0.73345 0.72907 0.72816 1.93647 1.40625 1.84794 1.75636 1.93526 1.67604 1.59842 1.76824 1.56258 1.14630 1.86211 1.32283 1.21263 0.88024 0.99518 0.91452 1.21384 0.97171 0.98840 0.93970 1.21571 0.97203 1.00587 0.96010 1.21537 0.99242 0.98040 0.96268 1.21137 0.96102 0.95034 0.98172 1.21998 0.93648 0.94182 0.97195 1.58696 1.44891 1.11128 1.23096 1.21442 0.96775 1.00052 0.96036 1.21634 0.99600 0.98291 0.95838 0.94301 0.90181 0.91284 0.94940 0.95315 0.92537 0.75507 0.90682 0.92029 0.90429 0.91568 0.91507 0.91658 0.92138 0.91786 0.90071 0.96046 0.84724 0.85150 0.90868 0.92622 0.91828 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.68 59.85 0.64 2.20 16 2 N -0.99 -20.04 3.23 -123.06 -0.40 -20.43 16 3 C 0.23 5.40 4.15 -5.20 -0.02 5.38 16 4 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 5 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 8 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 12 S 2.78 54.29 6.10 -107.50 -0.66 53.64 16 13 O -0.96 -22.92 17.11 -57.17 -0.98 -23.90 16 14 O -0.99 -20.63 16.21 -57.17 -0.93 -21.56 16 15 N -1.13 -15.98 5.93 -10.61 -0.06 -16.04 16 16 C 0.12 1.41 5.64 -4.04 -0.02 1.39 16 17 C -0.09 -0.85 2.29 -90.62 -0.21 -1.06 16 18 C -0.12 -0.87 4.93 -26.73 -0.13 -1.00 16 19 C -0.11 -0.76 5.45 -26.73 -0.15 -0.90 16 20 C -0.09 -0.60 2.81 -90.62 -0.25 -0.85 16 21 C 0.06 0.42 5.47 -3.82 -0.02 0.40 16 22 N -0.85 -5.73 9.08 -10.37 -0.09 -5.82 16 23 C -0.11 -0.87 5.34 -26.71 -0.14 -1.02 16 24 C -0.12 -1.08 4.80 -26.71 -0.13 -1.21 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.07 1.11 7.02 -51.93 -0.36 0.74 16 28 H 0.03 0.73 7.16 -51.93 -0.37 0.36 16 29 H 0.03 0.68 7.04 -51.93 -0.37 0.32 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 31 H 0.41 5.15 7.41 -34.47 -0.26 4.90 16 32 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.65 4.83 -51.93 -0.25 0.40 16 41 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.34 1.95 9.08 -39.29 -0.36 1.59 16 43 H 0.34 1.85 8.99 -39.29 -0.35 1.50 16 44 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.64 6.90 -51.93 -0.36 0.28 16 47 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -35.23 371.31 -10.25 -45.48 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.96 Total: 3.79 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.88 Total: -10.32 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: 0.22 Total: -69.29 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.90 Total: -45.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 54.29 SS G_CDS: -0.66 Total: 53.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.23 -10.25 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345194340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.216 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds