Wall clock time and date at job start Fri Apr 10 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00318 * 2 1 4 4 C 1.50700 * 109.47031 * 274.99775 * 3 2 1 5 5 H 1.08004 * 120.00035 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00166 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99999 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99789 * 359.97438 * 6 4 3 9 9 H 1.48491 * 109.47036 * 90.00192 * 8 6 4 10 10 H 1.48505 * 109.46801 * 209.99979 * 8 6 4 11 11 H 1.48496 * 109.46881 * 329.99796 * 8 6 4 12 12 S 1.65604 * 119.99660 * 179.97438 * 2 1 3 13 13 O 1.42093 * 106.40105 * 156.46583 * 12 2 1 14 14 O 1.42102 * 106.40436 * 23.54105 * 12 2 1 15 15 N 1.65609 * 107.21738 * 270.00162 * 12 2 1 16 16 C 1.46503 * 119.99759 * 65.00036 * 15 12 2 17 17 C 1.53000 * 109.46854 * 165.00276 * 16 15 12 18 18 C 1.52996 * 109.46955 * 185.00162 * 17 16 15 19 19 C 1.53000 * 109.46955 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47512 * 59.99584 * 19 18 17 21 21 C 1.53006 * 109.46646 * 59.99998 * 20 19 18 22 22 N 1.46902 * 109.46626 * 174.99983 * 21 20 19 23 23 C 1.52996 * 109.47350 * 300.00174 * 20 19 18 24 24 C 1.52997 * 109.47512 * 64.99746 * 17 16 15 25 25 H 1.08994 * 109.47494 * 270.00083 * 1 2 3 26 26 H 1.09000 * 109.46543 * 30.00685 * 1 2 3 27 27 H 1.09003 * 109.46855 * 149.99871 * 1 2 3 28 28 H 1.09002 * 109.47094 * 34.99166 * 3 2 1 29 29 H 1.08995 * 109.47156 * 154.99727 * 3 2 1 30 30 H 0.97002 * 119.99857 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99668 * 245.00644 * 15 12 2 32 32 H 1.09000 * 109.47025 * 45.00451 * 16 15 12 33 33 H 1.08994 * 109.46967 * 285.00034 * 16 15 12 34 34 H 1.09002 * 109.47044 * 305.00033 * 17 16 15 35 35 H 1.08997 * 109.47474 * 59.99903 * 18 17 16 36 36 H 1.09002 * 109.47139 * 299.99813 * 18 17 16 37 37 H 1.09002 * 109.47044 * 299.99871 * 19 18 17 38 38 H 1.09004 * 109.47376 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47175 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.46955 * 295.00330 * 21 20 19 41 41 H 1.09000 * 109.47050 * 55.00158 * 21 20 19 42 42 H 1.00900 * 110.99481 * 180.02562 * 22 21 20 43 43 H 1.00904 * 111.00423 * 303.95194 * 22 21 20 44 44 H 1.08997 * 109.47474 * 179.97438 * 23 20 19 45 45 H 1.09002 * 109.46922 * 300.00179 * 23 20 19 46 46 H 1.09004 * 109.47394 * 300.00717 * 24 17 16 47 47 H 1.09002 * 109.46731 * 60.00096 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9290 1.1933 -2.2332 6 6 2.9999 2.9507 -1.6664 7 7 3.1260 3.3841 -2.9017 8 14 3.7128 3.9408 -0.2519 9 1 5.1099 3.5063 0.0017 10 1 3.6989 5.3840 -0.6015 11 1 2.8961 3.7192 0.9684 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5438 14 8 1.4113 -2.4068 -0.5434 15 7 2.5380 -1.8581 1.5827 16 6 1.3944 -2.1768 2.4412 17 6 1.8873 -2.8833 3.7056 18 6 0.6861 -3.3270 4.5429 19 6 1.1789 -4.0341 5.8071 20 6 2.0436 -3.0728 6.6250 21 6 1.2142 -1.8479 7.0161 22 7 2.0060 -0.9826 7.9005 23 6 3.2448 -2.6291 5.7877 24 6 2.7516 -1.9215 4.5233 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6501 2.0043 0.5893 29 1 3.1857 1.1176 0.4343 30 1 3.5889 4.2180 -3.0782 31 1 3.4386 -1.8952 1.9409 32 1 0.7078 -2.8309 1.9037 33 1 0.8792 -1.2566 2.7165 34 1 2.4784 -3.7558 3.4274 35 1 0.0703 -4.0123 3.9604 36 1 0.0950 -2.4545 4.8212 37 1 1.7698 -4.9066 5.5284 38 1 0.3232 -4.3506 6.4035 39 1 2.3943 -3.5764 7.5258 40 1 0.9378 -1.2947 6.1186 41 1 0.3123 -2.1709 7.5361 42 1 1.4797 -0.1662 8.1734 43 1 2.3291 -1.4913 8.7098 44 1 3.8606 -1.9439 6.3702 45 1 3.8356 -3.5016 5.5090 46 1 3.6074 -1.6053 3.9268 47 1 2.1605 -1.0490 4.8016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345194340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:13 Heat of formation + Delta-G solvation = -125.510442 kcal Electronic energy + Delta-G solvation = -26368.844810 eV Core-core repulsion = 22711.074678 eV Total energy + Delta-G solvation = -3657.770132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40806 -38.31602 -37.29803 -36.86885 -36.78190 -34.50929 -34.38098 -31.55745 -31.36371 -30.27015 -26.85464 -26.56289 -24.93632 -23.83593 -23.41637 -21.97293 -20.36830 -19.44305 -19.16191 -18.65861 -18.22208 -17.45599 -17.14215 -16.58771 -16.09225 -15.93949 -15.70894 -15.41507 -15.25691 -14.79883 -14.64737 -14.48630 -14.26026 -14.10241 -13.83060 -13.63752 -13.40655 -13.17950 -13.14364 -13.09987 -12.97978 -12.94914 -12.68528 -12.36568 -12.30859 -12.24975 -11.99028 -11.90144 -11.86051 -11.70301 -10.96248 -10.92130 -10.84305 -10.78119 -10.41860 -9.76612 -9.46585 -8.28796 -6.34826 -0.34315 1.37458 1.41748 1.49981 2.04993 2.36004 2.64459 3.05202 3.41996 3.67250 3.72516 3.87864 3.96452 4.03248 4.18685 4.22372 4.38794 4.47590 4.54420 4.61602 4.66273 4.69463 4.73144 4.73832 4.83517 4.86275 4.89609 4.92553 5.00312 5.06768 5.10094 5.24248 5.29233 5.35240 5.36748 5.44958 5.48577 5.50545 5.60504 5.67740 5.72051 6.13681 6.31854 6.34490 6.66913 6.68252 7.28250 8.88915 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003737 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.343474 B = 7491.299209 C = 8534.869392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.999 5.999 3 C 0.236 3.764 4 C -0.546 4.546 5 H 0.026 0.974 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.228 1.228 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.011 7.011 15 N -1.116 6.116 16 C 0.115 3.885 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.082 4.082 21 C 0.062 3.938 22 N -0.859 5.859 23 C -0.102 4.102 24 C -0.115 4.115 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.421 0.579 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.346 0.654 43 H 0.343 0.657 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -12.978 26.559 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.840 5.840 3 C 0.111 3.889 4 C -0.585 4.585 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.150 1.150 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.994 6.994 15 N -0.880 5.880 16 C -0.011 4.011 17 C -0.107 4.107 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.101 4.101 21 C -0.068 4.068 22 N -0.389 5.389 23 C -0.140 4.140 24 C -0.153 4.153 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.633 -13.256 24.980 28.834 hybrid contribution 0.085 0.675 0.628 0.926 sum -5.548 -12.581 25.607 29.065 Atomic orbital electron populations 1.21640 0.77844 1.03521 1.02921 1.57293 1.15819 1.21422 1.89493 1.19194 0.91946 0.82493 0.95286 1.21743 1.36410 1.06823 0.93495 0.95514 1.25963 0.95742 0.98653 0.98818 1.70078 1.44118 1.22910 1.21843 0.85762 0.79816 0.77581 0.80156 1.19494 1.20406 1.15017 1.01218 0.72001 0.72582 0.73724 1.93574 1.43024 1.85428 1.77706 1.93498 1.67788 1.60146 1.77997 1.55765 1.16158 1.85437 1.30644 1.21594 0.87096 1.00589 0.91798 1.21339 0.97889 0.98417 0.93011 1.21571 0.96457 1.01042 0.96106 1.21517 0.99580 0.97769 0.95892 1.21113 0.95606 0.95221 0.98176 1.21949 0.93897 0.93987 0.96992 1.58694 1.45127 1.11530 1.23567 1.21392 0.97247 0.99716 0.95627 1.21619 0.99194 0.98337 0.96153 0.89774 0.91318 0.91103 0.92494 0.94834 0.92339 0.74322 0.90563 0.90642 0.90536 0.91053 0.90925 0.91649 0.90971 0.91235 0.90919 0.95339 0.84161 0.84422 0.91804 0.92591 0.92827 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.73 10.68 127.77 1.36 4.09 16 2 N -1.00 -39.48 3.23 -543.24 -1.75 -41.23 16 3 C 0.24 10.86 4.15 85.63 0.36 11.22 16 4 C -0.55 -32.14 9.94 25.60 0.25 -31.88 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.35 5.47 84.66 0.46 0.81 16 7 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 8 Si 0.95 43.06 27.47 68.60 1.88 44.95 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.23 -8.95 6.54 99.48 0.65 -8.29 16 12 S 2.80 108.08 6.10 -56.49 -0.34 107.74 16 13 O -1.01 -49.06 17.11 -128.00 -2.19 -51.25 16 14 O -1.01 -41.63 16.21 -128.00 -2.08 -43.71 16 15 N -1.12 -29.59 5.93 -187.49 -1.11 -30.70 16 16 C 0.11 2.32 5.64 86.38 0.49 2.80 16 17 C -0.09 -1.36 2.29 -10.80 -0.02 -1.39 16 18 C -0.11 -1.37 4.93 30.59 0.15 -1.22 16 19 C -0.11 -1.15 5.45 30.59 0.17 -0.98 16 20 C -0.08 -0.94 2.81 -10.79 -0.03 -0.98 16 21 C 0.06 0.71 5.47 86.31 0.47 1.18 16 22 N -0.86 -9.74 9.08 -186.71 -1.69 -11.43 16 23 C -0.10 -1.49 5.34 30.61 0.16 -1.32 16 24 C -0.12 -1.90 4.80 30.61 0.15 -1.75 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 27 H 0.07 2.20 7.02 -2.39 -0.02 2.19 16 28 H 0.06 2.37 7.16 -2.39 -0.02 2.35 16 29 H 0.03 1.53 7.04 -2.39 -0.02 1.51 16 30 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.42 9.91 7.41 -96.75 -0.72 9.19 16 32 H 0.08 1.56 7.75 -2.39 -0.02 1.54 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.81 6.55 -2.39 -0.02 0.80 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.97 4.83 -2.39 -0.01 0.95 16 41 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.35 3.25 9.08 -89.69 -0.81 2.44 16 43 H 0.34 3.06 8.99 -89.69 -0.81 2.25 16 44 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.98 6.90 -2.39 -0.02 0.96 16 47 H 0.07 1.16 6.32 -2.39 -0.02 1.14 16 Total: -1.00 -78.63 371.31 -4.42 -83.05 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -1.41 Total: 22.45 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.97 Total: -19.41 kcal Atomic # 7 Polarization: -139.56 SS G_CDS: -4.26 Total: -143.82 kcal Atomic # 8 Polarization: -90.70 SS G_CDS: -4.26 Total: -94.96 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 108.08 SS G_CDS: -0.34 Total: 107.74 kcal Total: -78.63 -4.42 -83.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345194340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.460 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds