Wall clock time and date at job start Fri Apr 10 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47251 * 2 1 4 4 C 1.46893 * 110.99894 * 66.04367 * 3 2 1 5 5 C 1.53238 * 109.33641 * 172.74611 * 4 3 2 6 6 N 1.47078 * 108.52095 * 53.83354 * 5 4 3 7 7 S 1.65606 * 120.88325 * 128.78969 * 6 5 4 8 8 O 1.42094 * 106.40488 * 206.30325 * 7 6 5 9 9 O 1.42102 * 106.40183 * 339.22403 * 7 6 5 10 10 N 1.65605 * 107.21773 * 92.76104 * 7 6 5 11 11 C 1.46497 * 119.99997 * 97.41962 * 10 7 6 12 12 C 1.46503 * 119.99879 * 277.42094 * 10 7 6 13 13 H 1.09003 * 109.47317 * 0.02562 * 12 10 7 14 14 C 1.53008 * 109.46797 * 119.99972 * 12 10 7 15 15 C 1.50699 * 109.47159 * 240.00001 * 12 10 7 16 16 H 1.07993 * 119.99998 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99656 * 180.02562 * 15 12 10 18 18 N 1.31508 * 120.00635 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99514 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47115 * 59.99802 * 19 17 15 21 21 H 1.48502 * 109.46965 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46933 * 299.99621 * 19 17 15 23 23 C 1.47072 * 118.23839 * 308.81312 * 6 5 4 24 24 H 1.09000 * 109.62903 * 291.47446 * 23 6 5 25 25 C 1.53002 * 109.63265 * 171.09207 * 23 6 5 26 26 C 1.46897 * 110.99536 * 301.74367 * 3 2 1 27 27 H 1.08995 * 109.47212 * 300.00021 * 1 2 3 28 28 H 1.08999 * 109.47259 * 59.99847 * 1 2 3 29 29 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47683 * 239.99897 * 2 1 3 31 31 H 1.08999 * 109.47259 * 120.00153 * 2 1 3 32 32 H 1.09002 * 109.49763 * 292.70659 * 4 3 2 33 33 H 1.08999 * 109.49310 * 52.79235 * 4 3 2 34 34 H 1.09002 * 109.62863 * 173.54030 * 5 4 3 35 35 H 1.09000 * 109.63382 * 293.92527 * 5 4 3 36 36 H 1.09002 * 109.46849 * 84.20640 * 11 10 7 37 37 H 1.09000 * 109.47253 * 204.20172 * 11 10 7 38 38 H 1.09002 * 109.46957 * 324.20700 * 11 10 7 39 39 H 1.08997 * 109.47176 * 299.99955 * 14 12 10 40 40 H 1.08989 * 109.47001 * 60.00055 * 14 12 10 41 41 H 1.09005 * 109.46524 * 180.02562 * 14 12 10 42 42 H 0.97001 * 120.00398 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47038 * 52.81536 * 25 23 6 44 44 H 1.08997 * 109.47037 * 172.82040 * 25 23 6 45 45 H 1.08997 * 109.46647 * 292.82136 * 25 23 6 46 46 H 1.09001 * 109.49850 * 307.21119 * 26 3 2 47 47 H 1.08998 * 109.49936 * 67.29644 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0669 1.2532 5 6 2.3499 3.4398 1.2905 6 7 1.9942 4.1707 0.0648 7 16 1.3909 5.7111 0.1384 8 8 0.6055 5.8909 -1.0320 9 8 0.8768 5.8783 1.4526 10 7 2.6754 6.7477 0.0034 11 6 3.0051 7.3402 -1.2952 12 6 3.4819 7.0720 1.1826 13 1 3.0885 6.5408 2.0492 14 6 4.9322 6.6486 0.9406 15 6 3.4275 8.5566 1.4355 16 1 2.8496 9.1947 0.7834 17 6 4.1156 9.1003 2.4994 18 7 4.8190 8.3233 3.2938 19 14 4.0476 10.9405 2.8134 20 1 2.6399 11.3507 3.0491 21 1 4.8663 11.2694 4.0079 22 1 4.5830 11.6642 1.6324 23 6 2.1881 3.4970 -1.2281 24 1 3.2539 3.3745 -1.4210 25 6 1.5570 4.3331 -2.3433 26 6 1.5148 2.1218 -1.1663 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5891 2.1947 1.3086 33 1 2.0101 1.4697 2.0993 34 1 2.0041 3.9960 2.1618 35 1 3.4311 3.3118 1.3433 36 1 2.3913 8.2264 -1.4565 37 1 4.0584 7.6202 -1.3099 38 1 2.8108 6.6149 -2.0854 39 1 4.9716 5.5749 0.7576 40 1 5.3259 7.1795 0.0739 41 1 5.5322 6.8896 1.8181 42 1 5.3028 8.7058 4.0426 43 1 1.9366 5.3535 -2.2915 44 1 1.8109 3.8996 -3.3105 45 1 0.4738 4.3418 -2.2220 46 1 1.7421 1.5644 -2.0750 47 1 0.4359 2.2488 -1.0773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352602481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:24 Heat of formation + Delta-G solvation = -41.940903 kcal Electronic energy + Delta-G solvation = -27832.975377 eV Core-core repulsion = 24178.829092 eV Total energy + Delta-G solvation = -3654.146285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.37097 -37.03820 -36.17102 -35.50392 -35.13741 -32.58060 -32.26979 -30.25729 -29.09372 -27.43966 -25.76361 -25.51120 -25.10222 -23.08259 -21.99762 -20.71206 -20.15365 -18.16321 -16.99410 -16.87441 -16.38522 -15.94566 -15.52605 -15.38767 -14.98217 -14.67988 -14.44683 -14.00441 -13.78196 -13.44832 -13.29725 -12.88531 -12.83518 -12.67785 -12.37145 -12.24571 -12.04549 -11.95371 -11.64394 -11.49828 -11.39995 -11.23982 -11.21014 -11.01095 -10.97296 -10.84154 -10.77760 -10.72399 -10.33699 -10.26191 -9.94445 -9.89306 -9.25422 -8.92593 -8.44406 -8.30028 -7.92856 -6.05931 -4.12259 1.20802 3.31354 3.35485 3.38442 3.43682 3.82592 4.10597 4.41487 4.70548 4.76311 4.83663 4.96677 5.05601 5.16857 5.18801 5.25230 5.28012 5.36201 5.45861 5.52834 5.60554 5.64621 5.66501 5.71328 5.81750 5.87456 5.96894 6.01071 6.14213 6.22315 6.29669 6.42848 6.62961 6.67846 6.76634 6.81842 6.89936 6.97623 6.99936 7.04265 7.49552 7.65185 7.79797 8.05978 8.29421 8.89434 9.53401 10.99649 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.004291 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.023396 B = 6523.508928 C = 6959.154012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.044 3.956 5 C 0.124 3.876 6 N -1.007 6.007 7 S 2.775 3.225 8 O -0.992 6.992 9 O -0.977 6.977 10 N -0.990 5.990 11 C 0.105 3.895 12 C 0.272 3.728 13 H 0.052 0.948 14 C -0.147 4.147 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.159 3.841 24 H 0.078 0.922 25 C -0.179 4.179 26 C 0.048 3.952 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.263 0.737 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -14.890 -8.506 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.259 5.259 4 C -0.086 4.086 5 C -0.002 4.002 6 N -0.846 5.846 7 S 2.787 3.213 8 O -0.976 6.976 9 O -0.961 6.961 10 N -0.832 5.832 11 C -0.041 4.041 12 C 0.169 3.831 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C 0.052 3.948 24 H 0.096 0.904 25 C -0.237 4.237 26 C -0.081 4.081 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.052 0.948 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.920 -14.629 -8.246 17.245 hybrid contribution -0.422 0.875 0.271 1.008 sum -4.342 -13.754 -7.975 16.482 Atomic orbital electron populations 1.22462 0.98361 1.02194 1.02339 1.22165 0.92808 0.89963 1.02744 1.62096 1.59314 1.01909 1.02543 1.22463 0.98540 0.95399 0.92182 1.21475 1.00554 0.91547 0.86640 1.58476 1.82293 1.32523 1.11318 1.02170 0.74088 0.72236 0.72843 1.93643 1.68999 1.86020 1.48913 1.93568 1.77725 1.85060 1.39736 1.57765 1.50590 1.58655 1.16227 1.21298 1.02375 0.97361 0.83043 1.18657 0.87310 0.96528 0.80612 0.93014 1.22114 1.00223 0.95886 1.02460 1.21298 1.30065 0.92108 1.12419 0.92085 1.24894 0.95049 0.98240 0.95632 1.69840 1.31473 1.34970 1.16661 0.86569 0.78183 0.85117 0.77602 1.20175 1.21212 1.20255 1.21006 1.00118 0.91346 0.82351 0.90426 1.22836 1.03788 1.00378 0.96700 1.22514 0.97581 0.94393 0.93630 0.92423 0.92357 0.92202 0.90711 0.90658 0.94217 0.89718 0.88410 0.90664 0.93559 0.90661 0.92904 0.96924 0.94830 0.88953 0.92670 0.89950 0.92245 0.89542 0.90042 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 9.22 37.15 0.34 -1.34 16 2 C 0.05 0.46 6.07 -3.82 -0.02 0.44 16 3 N -0.54 -6.10 4.83 -234.33 -1.13 -7.23 16 4 C 0.04 0.54 5.16 -3.71 -0.02 0.52 16 5 C 0.12 1.84 6.67 -3.60 -0.02 1.82 16 6 N -1.01 -16.10 3.39 -106.20 -0.36 -16.45 16 7 S 2.77 54.99 5.72 -107.50 -0.61 54.38 16 8 O -0.99 -19.53 12.07 -57.17 -0.69 -20.22 16 9 O -0.98 -23.02 15.50 -57.17 -0.89 -23.91 16 10 N -0.99 -20.64 3.12 -115.85 -0.36 -21.00 16 11 C 0.11 1.89 9.43 59.85 0.56 2.45 16 12 C 0.27 6.62 2.59 -69.08 -0.18 6.44 16 13 H 0.05 1.39 7.12 -51.93 -0.37 1.02 16 14 C -0.15 -3.32 8.96 37.16 0.33 -2.99 16 15 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 16 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.16 2.12 3.66 -67.49 -0.25 1.87 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 C -0.18 -2.39 7.54 37.16 0.28 -2.11 16 26 C 0.05 0.56 4.24 -3.70 -0.02 0.54 16 27 H 0.06 0.55 6.72 -51.93 -0.35 0.20 16 28 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.04 0.51 6.84 -51.93 -0.35 0.15 16 33 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 34 H 0.10 1.60 6.87 -51.93 -0.36 1.24 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.33 6.44 -51.93 -0.33 0.99 16 38 H 0.05 0.80 5.06 -51.93 -0.26 0.53 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.03 0.72 6.67 -51.94 -0.35 0.37 16 41 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.08 1.22 3.13 -51.93 -0.16 1.06 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.28 6.69 -51.93 -0.35 0.93 16 46 H 0.08 0.79 8.11 -51.93 -0.42 0.36 16 47 H 0.04 0.51 6.69 -51.93 -0.35 0.16 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -30.71 356.02 -10.08 -40.79 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.64 Total: 1.16 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 0.63 Total: -5.03 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.23 Total: -68.71 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.58 Total: -44.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.61 Total: 54.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -10.08 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.148 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds