Wall clock time and date at job start Fri Apr 10 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47251 * 2 1 4 4 C 1.46893 * 110.99894 * 66.04367 * 3 2 1 5 5 C 1.53238 * 109.33641 * 172.74611 * 4 3 2 6 6 N 1.47078 * 108.52095 * 53.83354 * 5 4 3 7 7 S 1.65606 * 120.88325 * 128.78969 * 6 5 4 8 8 O 1.42094 * 106.40488 * 206.30325 * 7 6 5 9 9 O 1.42102 * 106.40183 * 339.22403 * 7 6 5 10 10 N 1.65605 * 107.21773 * 92.76104 * 7 6 5 11 11 C 1.46497 * 119.99997 * 97.41962 * 10 7 6 12 12 C 1.46503 * 119.99879 * 277.42094 * 10 7 6 13 13 H 1.09003 * 109.47317 * 0.02562 * 12 10 7 14 14 C 1.53008 * 109.46797 * 119.99972 * 12 10 7 15 15 C 1.50699 * 109.47159 * 240.00001 * 12 10 7 16 16 H 1.07993 * 119.99998 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99656 * 180.02562 * 15 12 10 18 18 N 1.31508 * 120.00635 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99514 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47115 * 59.99802 * 19 17 15 21 21 H 1.48502 * 109.46965 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46933 * 299.99621 * 19 17 15 23 23 C 1.47072 * 118.23839 * 308.81312 * 6 5 4 24 24 H 1.09000 * 109.62903 * 291.47446 * 23 6 5 25 25 C 1.53002 * 109.63265 * 171.09207 * 23 6 5 26 26 C 1.46897 * 110.99536 * 301.74367 * 3 2 1 27 27 H 1.08995 * 109.47212 * 300.00021 * 1 2 3 28 28 H 1.08999 * 109.47259 * 59.99847 * 1 2 3 29 29 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47683 * 239.99897 * 2 1 3 31 31 H 1.08999 * 109.47259 * 120.00153 * 2 1 3 32 32 H 1.09002 * 109.49763 * 292.70659 * 4 3 2 33 33 H 1.08999 * 109.49310 * 52.79235 * 4 3 2 34 34 H 1.09002 * 109.62863 * 173.54030 * 5 4 3 35 35 H 1.09000 * 109.63382 * 293.92527 * 5 4 3 36 36 H 1.09002 * 109.46849 * 84.20640 * 11 10 7 37 37 H 1.09000 * 109.47253 * 204.20172 * 11 10 7 38 38 H 1.09002 * 109.46957 * 324.20700 * 11 10 7 39 39 H 1.08997 * 109.47176 * 299.99955 * 14 12 10 40 40 H 1.08989 * 109.47001 * 60.00055 * 14 12 10 41 41 H 1.09005 * 109.46524 * 180.02562 * 14 12 10 42 42 H 0.97001 * 120.00398 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47038 * 52.81536 * 25 23 6 44 44 H 1.08997 * 109.47037 * 172.82040 * 25 23 6 45 45 H 1.08997 * 109.46647 * 292.82136 * 25 23 6 46 46 H 1.09001 * 109.49850 * 307.21119 * 26 3 2 47 47 H 1.08998 * 109.49936 * 67.29644 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0669 1.2532 5 6 2.3499 3.4398 1.2905 6 7 1.9942 4.1707 0.0648 7 16 1.3909 5.7111 0.1384 8 8 0.6055 5.8909 -1.0320 9 8 0.8768 5.8783 1.4526 10 7 2.6754 6.7477 0.0034 11 6 3.0051 7.3402 -1.2952 12 6 3.4819 7.0720 1.1826 13 1 3.0885 6.5408 2.0492 14 6 4.9322 6.6486 0.9406 15 6 3.4275 8.5566 1.4355 16 1 2.8496 9.1947 0.7834 17 6 4.1156 9.1003 2.4994 18 7 4.8190 8.3233 3.2938 19 14 4.0476 10.9405 2.8134 20 1 2.6399 11.3507 3.0491 21 1 4.8663 11.2694 4.0079 22 1 4.5830 11.6642 1.6324 23 6 2.1881 3.4970 -1.2281 24 1 3.2539 3.3745 -1.4210 25 6 1.5570 4.3331 -2.3433 26 6 1.5148 2.1218 -1.1663 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5891 2.1947 1.3086 33 1 2.0101 1.4697 2.0993 34 1 2.0041 3.9960 2.1618 35 1 3.4311 3.3118 1.3433 36 1 2.3913 8.2264 -1.4565 37 1 4.0584 7.6202 -1.3099 38 1 2.8108 6.6149 -2.0854 39 1 4.9716 5.5749 0.7576 40 1 5.3259 7.1795 0.0739 41 1 5.5322 6.8896 1.8181 42 1 5.3028 8.7058 4.0426 43 1 1.9366 5.3535 -2.2915 44 1 1.8109 3.8996 -3.3105 45 1 0.4738 4.3418 -2.2220 46 1 1.7421 1.5644 -2.0750 47 1 0.4359 2.2488 -1.0773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352602481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:23 Heat of formation + Delta-G solvation = -64.126800 kcal Electronic energy + Delta-G solvation = -27833.937430 eV Core-core repulsion = 24178.829092 eV Total energy + Delta-G solvation = -3655.108337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36431 -38.60946 -37.92236 -36.93728 -36.42666 -34.53264 -33.38404 -31.10993 -30.92127 -28.51548 -27.28122 -26.94689 -26.66341 -24.09367 -23.01123 -22.51666 -21.19656 -19.68724 -18.63737 -18.42045 -18.00805 -17.37544 -16.75305 -16.48442 -16.31918 -16.01039 -15.69970 -15.33578 -15.01310 -14.79433 -14.64316 -14.50038 -14.19620 -13.89000 -13.70018 -13.39156 -13.24220 -13.22311 -13.14576 -12.98957 -12.82627 -12.79736 -12.69195 -12.60269 -12.39871 -12.19684 -12.17773 -12.04462 -11.98637 -11.60700 -11.58411 -11.16107 -11.12170 -10.50753 -10.11460 -9.64173 -9.21784 -8.11552 -6.25097 -0.33545 1.42251 1.44215 1.51213 1.99943 2.42558 2.58573 2.93755 3.16249 3.38314 3.58182 3.88912 4.08464 4.08974 4.11573 4.25032 4.27493 4.40000 4.43163 4.52162 4.56243 4.66605 4.72797 4.75119 4.80783 4.85525 4.91358 4.93221 5.01408 5.03427 5.06226 5.11446 5.16023 5.17469 5.23273 5.33854 5.54455 5.61950 5.62690 5.83310 5.88501 6.05569 6.15518 6.16488 6.30713 6.81498 7.43620 8.92212 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.004291 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.023396 B = 6523.508928 C = 6959.154012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 N -0.540 5.540 4 C 0.050 3.950 5 C 0.119 3.881 6 N -1.001 6.001 7 S 2.784 3.216 8 O -0.993 6.993 9 O -1.023 7.023 10 N -0.998 5.998 11 C 0.100 3.900 12 C 0.278 3.722 13 H 0.019 0.981 14 C -0.132 4.132 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.953 3.047 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.266 1.266 23 C 0.153 3.847 24 H 0.090 0.910 25 C -0.178 4.178 26 C 0.051 3.949 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -16.431 -10.183 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.076 4.076 3 N -0.263 5.263 4 C -0.080 4.080 5 C -0.006 4.006 6 N -0.842 5.842 7 S 2.796 3.204 8 O -0.977 6.977 9 O -1.007 7.007 10 N -0.839 5.839 11 C -0.045 4.045 12 C 0.174 3.826 13 H 0.036 0.964 14 C -0.192 4.192 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.191 1.191 23 C 0.048 3.952 24 H 0.108 0.892 25 C -0.236 4.236 26 C -0.079 4.079 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.127 0.873 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.388 -16.166 -9.948 19.282 hybrid contribution -0.625 1.261 0.740 1.590 sum -4.013 -14.905 -9.207 17.973 Atomic orbital electron populations 1.22428 0.98239 1.02945 1.01429 1.22257 0.92849 0.88423 1.04022 1.62112 1.59518 1.02921 1.01787 1.22383 0.97697 0.94152 0.93746 1.21567 1.01080 0.92602 0.85401 1.58203 1.82049 1.30977 1.13017 1.01730 0.73945 0.72925 0.71770 1.93656 1.69262 1.86523 1.48300 1.93503 1.78848 1.86085 1.42220 1.57684 1.50171 1.59814 1.16242 1.21489 1.02412 0.98089 0.82554 1.18326 0.88514 0.94800 0.81004 0.96357 1.21888 0.98400 0.97351 1.01528 1.21617 1.30099 0.93634 1.12678 0.92856 1.25605 0.94824 1.02108 0.95487 1.69953 1.31821 1.36396 1.16882 0.85694 0.77851 0.80641 0.77945 1.20634 1.20492 1.19129 1.21302 1.01116 0.92098 0.80727 0.89228 1.22775 1.02547 0.99750 0.98534 1.22521 0.96851 0.93574 0.94907 0.93745 0.92862 0.90626 0.89104 0.89754 0.95085 0.87787 0.90774 0.90126 0.94168 0.90384 0.89777 0.94705 0.93985 0.91480 0.92588 0.91554 0.88707 0.91207 0.87272 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 9.22 71.98 0.66 -2.21 16 2 C 0.05 0.77 6.07 86.30 0.52 1.29 16 3 N -0.54 -10.91 4.83 -895.28 -4.32 -15.23 16 4 C 0.05 1.17 5.16 86.38 0.45 1.61 16 5 C 0.12 3.55 6.67 86.35 0.58 4.12 16 6 N -1.00 -31.51 3.39 -489.91 -1.66 -33.17 16 7 S 2.78 112.10 5.72 -56.49 -0.32 111.77 16 8 O -0.99 -39.08 12.07 -128.00 -1.55 -40.62 16 9 O -1.02 -50.37 15.50 -128.00 -1.98 -52.35 16 10 N -1.00 -41.96 3.12 -520.43 -1.62 -43.58 16 11 C 0.10 3.51 9.43 127.77 1.21 4.71 16 12 C 0.28 13.83 2.59 44.25 0.11 13.94 16 13 H 0.02 1.04 7.12 -2.39 -0.02 1.03 16 14 C -0.13 -5.96 8.96 71.98 0.64 -5.32 16 15 C -0.54 -29.78 8.37 25.60 0.21 -29.57 16 16 H 0.05 2.94 7.65 -2.91 -0.02 2.91 16 17 C 0.02 1.09 5.30 84.66 0.45 1.54 16 18 N -0.91 -51.26 11.32 21.45 0.24 -51.02 16 19 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 C 0.15 3.75 3.66 44.96 0.16 3.92 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 25 C -0.18 -4.35 7.54 71.98 0.54 -3.80 16 26 C 0.05 1.04 4.24 86.39 0.37 1.40 16 27 H 0.04 0.78 6.72 -2.39 -0.02 0.76 16 28 H 0.05 0.85 6.54 -2.39 -0.02 0.84 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 32 H 0.03 0.78 6.84 -2.39 -0.02 0.76 16 33 H 0.10 2.01 8.04 -2.39 -0.02 2.00 16 34 H 0.07 2.55 6.87 -2.39 -0.02 2.53 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 2.68 6.44 -2.39 -0.02 2.66 16 38 H 0.08 2.41 5.06 -2.39 -0.01 2.39 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.77 6.67 -2.39 -0.02 1.76 16 41 H 0.07 3.39 6.07 -2.38 -0.01 3.37 16 42 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.07 1.84 3.13 -2.39 -0.01 1.83 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.96 6.69 -2.39 -0.02 1.94 16 46 H 0.11 1.65 8.11 -2.39 -0.02 1.63 16 47 H 0.03 0.75 6.69 -2.39 -0.02 0.73 16 Total: -1.00 -67.19 356.02 -2.32 -69.52 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.96 Total: 17.33 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.91 Total: -8.35 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -7.36 Total: -143.00 kcal Atomic # 8 Polarization: -89.44 SS G_CDS: -3.53 Total: -92.97 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 112.10 SS G_CDS: -0.32 Total: 111.77 kcal Total: -67.19 -2.32 -69.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.391 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds