Wall clock time and date at job start Fri Apr 10 2020 18:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47310 * 2 1 4 4 C 1.46903 * 110.99764 * 65.69685 * 3 2 1 5 5 C 1.53243 * 109.33713 * 187.25681 * 4 3 2 6 6 N 1.47081 * 108.51685 * 306.16581 * 5 4 3 7 7 S 1.65602 * 120.88051 * 231.16155 * 6 5 4 8 8 O 1.42104 * 106.40039 * 15.25054 * 7 6 5 9 9 O 1.42094 * 106.40113 * 148.17065 * 7 6 5 10 10 N 1.65596 * 107.22042 * 261.71158 * 7 6 5 11 11 C 1.46506 * 120.00004 * 81.69975 * 10 7 6 12 12 C 1.46498 * 120.00201 * 261.70096 * 10 7 6 13 13 H 1.09002 * 109.47001 * 354.48407 * 12 10 7 14 14 C 1.53002 * 109.47410 * 114.48195 * 12 10 7 15 15 C 1.50699 * 109.47344 * 234.48655 * 12 10 7 16 16 H 1.08003 * 119.99690 * 359.97438 * 15 12 10 17 17 C 1.37871 * 120.00015 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00411 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99986 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47332 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47413 * 119.99403 * 19 17 15 22 22 H 1.48505 * 109.47335 * 239.99813 * 19 17 15 23 23 C 1.47079 * 118.23555 * 51.19154 * 6 5 4 24 24 H 1.08996 * 109.63056 * 68.52623 * 23 6 5 25 25 C 1.53005 * 109.62334 * 189.09860 * 23 6 5 26 26 C 1.46895 * 110.99924 * 189.99533 * 3 2 1 27 27 H 1.08996 * 109.47418 * 300.00457 * 1 2 3 28 28 H 1.09006 * 109.46861 * 60.00156 * 1 2 3 29 29 H 1.08994 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47832 * 240.00171 * 2 1 3 31 31 H 1.09003 * 109.47324 * 120.00051 * 2 1 3 32 32 H 1.09005 * 109.49042 * 307.21429 * 4 3 2 33 33 H 1.08997 * 109.49556 * 67.26628 * 4 3 2 34 34 H 1.08994 * 109.62844 * 65.87675 * 5 4 3 35 35 H 1.08997 * 109.62276 * 186.26677 * 5 4 3 36 36 H 1.08993 * 109.47018 * 90.00101 * 11 10 7 37 37 H 1.09003 * 109.46644 * 209.99966 * 11 10 7 38 38 H 1.09001 * 109.47314 * 329.99679 * 11 10 7 39 39 H 1.09004 * 109.47194 * 180.02562 * 14 12 10 40 40 H 1.09004 * 109.46888 * 300.00198 * 14 12 10 41 41 H 1.09002 * 109.46866 * 60.00129 * 14 12 10 42 42 H 0.97002 * 120.00593 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.46566 * 187.07574 * 25 23 6 44 44 H 1.09000 * 109.47390 * 307.07668 * 25 23 6 45 45 H 1.08999 * 109.46908 * 67.08095 * 25 23 6 46 46 H 1.09000 * 109.49417 * 52.79267 * 26 3 2 47 47 H 1.09000 * 109.52048 * 292.71817 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6630 2.0695 1.2499 5 6 2.0287 3.5534 1.1381 6 7 3.4446 3.6579 0.7540 7 16 4.4890 4.6166 1.6099 8 8 3.8413 4.9186 2.8382 9 8 5.7617 3.9890 1.5362 10 7 4.6253 6.0481 0.7888 11 6 3.6047 7.0864 0.9522 12 6 5.7664 6.2764 -0.1011 13 1 6.4633 5.4422 -0.0196 14 6 5.2727 6.3891 -1.5449 15 6 6.4630 7.5533 0.2927 16 1 6.0926 8.1367 1.1226 17 6 7.5727 7.9773 -0.4072 18 7 8.0235 7.2672 -1.4181 19 14 8.4358 9.5605 0.0805 20 1 7.7366 10.1684 1.2411 21 1 9.8431 9.2636 0.4502 22 1 8.4137 10.5087 -1.0622 23 6 3.9082 2.8888 -0.4109 24 1 3.4675 3.2991 -1.3194 25 6 5.4341 2.9585 -0.4984 26 6 3.4685 1.4311 -0.2380 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5917 1.9711 1.4256 33 1 2.2102 1.6211 2.0791 34 1 1.4073 4.0274 0.3784 35 1 1.8699 4.0430 2.0989 36 1 3.8830 7.7429 1.7766 37 1 3.5284 7.6686 0.0339 38 1 2.6433 6.6202 1.1677 39 1 6.1218 6.5585 -2.2071 40 1 4.7688 5.4654 -1.8297 41 1 4.5758 7.2232 -1.6265 42 1 8.8045 7.5652 -1.9103 43 1 5.7661 2.4961 -1.4280 44 1 5.7521 4.0009 -0.4773 45 1 5.8712 2.4281 0.3476 46 1 3.7067 0.8699 -1.1416 47 1 3.9913 0.9918 0.6115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352602482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:27 Heat of formation + Delta-G solvation = -47.312922 kcal Electronic energy + Delta-G solvation = -27789.945030 eV Core-core repulsion = 24135.565797 eV Total energy + Delta-G solvation = -3654.379233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.23387 -37.04197 -36.15380 -35.45893 -35.12788 -32.57147 -32.24277 -30.68669 -29.15176 -27.48819 -25.53344 -25.32279 -24.97785 -23.28940 -21.41393 -20.80950 -20.46515 -18.17652 -17.15004 -16.95244 -16.34314 -15.89787 -15.51215 -15.30329 -15.04042 -14.71275 -14.39973 -14.29212 -13.52069 -13.41022 -13.22468 -13.01298 -12.72654 -12.44587 -12.34089 -12.14374 -11.97559 -11.87835 -11.66557 -11.48646 -11.36194 -11.34789 -11.21637 -11.08677 -10.97554 -10.85658 -10.81298 -10.62269 -10.42685 -10.25676 -10.02829 -9.86735 -9.15704 -8.94204 -8.45162 -8.35946 -7.93543 -6.07896 -4.14104 1.18723 3.27336 3.35604 3.38891 3.42129 3.76523 4.08759 4.39798 4.72675 4.73665 4.84535 4.97896 5.10416 5.22336 5.23807 5.27356 5.28791 5.38893 5.40064 5.53806 5.59770 5.66462 5.68477 5.77749 5.83409 5.92216 5.97569 6.06241 6.18197 6.28583 6.38339 6.42329 6.62927 6.73735 6.81207 6.85954 6.90836 6.96320 6.99912 7.05631 7.49410 7.66611 7.81133 8.04738 8.28912 8.88741 9.51598 10.97746 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.004112 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.395352 B = 6808.392743 C = 7188.676038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.042 3.958 5 C 0.123 3.877 6 N -1.010 6.010 7 S 2.776 3.224 8 O -0.998 6.998 9 O -0.972 6.972 10 N -0.991 5.991 11 C 0.114 3.886 12 C 0.261 3.739 13 H 0.069 0.931 14 C -0.150 4.150 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.164 3.836 24 H 0.079 0.921 25 C -0.191 4.191 26 C 0.050 3.950 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.012 0.988 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -11.580 0.229 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.087 4.087 5 C -0.003 4.003 6 N -0.849 5.849 7 S 2.788 3.212 8 O -0.982 6.982 9 O -0.956 6.956 10 N -0.833 5.833 11 C -0.033 4.033 12 C 0.159 3.841 13 H 0.087 0.913 14 C -0.209 4.209 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.057 3.943 24 H 0.097 0.903 25 C -0.249 4.249 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.207 -11.554 0.548 17.556 hybrid contribution 0.641 0.549 0.426 0.945 sum -12.566 -11.005 0.974 16.732 Atomic orbital electron populations 1.21805 0.94894 1.01377 1.02546 1.22073 0.96077 0.88925 1.00711 1.61921 1.14100 1.15300 1.34917 1.22486 1.01046 0.94788 0.90398 1.21453 0.81659 0.95916 1.01321 1.58539 1.20767 1.61184 1.44383 1.02133 0.73014 0.72962 0.73135 1.93500 1.77489 1.84897 1.42341 1.93666 1.40298 1.74843 1.86753 1.57738 1.33436 1.29197 1.62922 1.21088 0.88222 0.91731 1.02255 1.18878 0.81367 0.98581 0.85293 0.91328 1.22161 1.01341 0.97128 1.00317 1.21366 1.11696 1.07227 1.15652 0.91861 1.24903 0.96767 0.97319 0.94893 1.69865 1.24374 1.38377 1.20132 0.86454 0.79515 0.83079 0.78437 1.19747 1.20917 1.20992 1.20994 0.95174 0.89867 0.88242 0.90327 1.22895 0.92155 1.06550 1.03287 1.22534 0.87046 0.97268 1.01136 0.92637 0.91768 0.92467 0.90756 0.95094 0.89568 0.94523 0.91008 0.88712 0.93322 0.90965 0.93799 0.88901 0.96860 0.94908 0.92749 0.91731 0.89073 0.89405 0.89825 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.84 37.15 0.37 -0.77 16 2 C 0.05 0.46 5.68 -3.82 -0.02 0.44 16 3 N -0.54 -6.13 4.63 -234.31 -1.08 -7.21 16 4 C 0.04 0.48 5.46 -3.70 -0.02 0.46 16 5 C 0.12 1.60 6.68 -3.60 -0.02 1.58 16 6 N -1.01 -15.96 3.39 -106.20 -0.36 -16.32 16 7 S 2.78 55.25 5.62 -107.50 -0.60 54.64 16 8 O -1.00 -21.17 15.96 -57.17 -0.91 -22.08 16 9 O -0.97 -21.76 12.01 -57.17 -0.69 -22.45 16 10 N -0.99 -20.69 3.12 -115.85 -0.36 -21.05 16 11 C 0.11 2.06 9.32 59.85 0.56 2.62 16 12 C 0.26 6.30 1.84 -69.08 -0.13 6.17 16 13 H 0.07 1.82 5.18 -51.93 -0.27 1.55 16 14 C -0.15 -3.36 8.78 37.16 0.33 -3.03 16 15 C -0.52 -13.87 8.31 -34.44 -0.29 -14.16 16 16 H 0.06 1.69 7.34 -52.48 -0.39 1.31 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.39 11.32 55.43 0.63 -23.76 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.16 2.41 3.67 -67.49 -0.25 2.16 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 C -0.19 -3.20 7.57 37.16 0.28 -2.92 16 26 C 0.05 0.62 4.91 -3.70 -0.02 0.60 16 27 H 0.05 0.42 6.40 -51.93 -0.33 0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 31 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 32 H 0.09 0.80 6.16 -51.93 -0.32 0.48 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.25 6.79 -51.93 -0.35 0.90 16 36 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 37 H 0.07 1.27 6.73 -51.93 -0.35 0.92 16 38 H 0.04 0.66 7.99 -51.93 -0.42 0.25 16 39 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 40 H 0.01 0.25 7.71 -51.93 -0.40 -0.15 16 41 H 0.03 0.70 6.89 -51.93 -0.36 0.34 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.82 2.69 -51.93 -0.14 1.68 16 45 H 0.09 1.56 6.58 -51.93 -0.34 1.22 16 46 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 47 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -30.46 358.18 -10.05 -40.51 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.74 Total: 1.61 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 0.69 Total: -5.25 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.18 Total: -68.34 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.60 Total: -44.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.60 Total: 54.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.46 -10.05 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds