Wall clock time and date at job start Fri Apr 10 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47310 * 2 1 4 4 C 1.46903 * 110.99764 * 65.69685 * 3 2 1 5 5 C 1.53243 * 109.33713 * 187.25681 * 4 3 2 6 6 N 1.47081 * 108.51685 * 306.16581 * 5 4 3 7 7 S 1.65602 * 120.88051 * 231.16155 * 6 5 4 8 8 O 1.42104 * 106.40039 * 15.25054 * 7 6 5 9 9 O 1.42094 * 106.40113 * 148.17065 * 7 6 5 10 10 N 1.65596 * 107.22042 * 261.71158 * 7 6 5 11 11 C 1.46506 * 120.00004 * 81.69975 * 10 7 6 12 12 C 1.46498 * 120.00201 * 261.70096 * 10 7 6 13 13 H 1.09002 * 109.47001 * 354.48407 * 12 10 7 14 14 C 1.53002 * 109.47410 * 114.48195 * 12 10 7 15 15 C 1.50699 * 109.47344 * 234.48655 * 12 10 7 16 16 H 1.08003 * 119.99690 * 359.97438 * 15 12 10 17 17 C 1.37871 * 120.00015 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00411 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99986 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47332 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47413 * 119.99403 * 19 17 15 22 22 H 1.48505 * 109.47335 * 239.99813 * 19 17 15 23 23 C 1.47079 * 118.23555 * 51.19154 * 6 5 4 24 24 H 1.08996 * 109.63056 * 68.52623 * 23 6 5 25 25 C 1.53005 * 109.62334 * 189.09860 * 23 6 5 26 26 C 1.46895 * 110.99924 * 189.99533 * 3 2 1 27 27 H 1.08996 * 109.47418 * 300.00457 * 1 2 3 28 28 H 1.09006 * 109.46861 * 60.00156 * 1 2 3 29 29 H 1.08994 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47832 * 240.00171 * 2 1 3 31 31 H 1.09003 * 109.47324 * 120.00051 * 2 1 3 32 32 H 1.09005 * 109.49042 * 307.21429 * 4 3 2 33 33 H 1.08997 * 109.49556 * 67.26628 * 4 3 2 34 34 H 1.08994 * 109.62844 * 65.87675 * 5 4 3 35 35 H 1.08997 * 109.62276 * 186.26677 * 5 4 3 36 36 H 1.08993 * 109.47018 * 90.00101 * 11 10 7 37 37 H 1.09003 * 109.46644 * 209.99966 * 11 10 7 38 38 H 1.09001 * 109.47314 * 329.99679 * 11 10 7 39 39 H 1.09004 * 109.47194 * 180.02562 * 14 12 10 40 40 H 1.09004 * 109.46888 * 300.00198 * 14 12 10 41 41 H 1.09002 * 109.46866 * 60.00129 * 14 12 10 42 42 H 0.97002 * 120.00593 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.46566 * 187.07574 * 25 23 6 44 44 H 1.09000 * 109.47390 * 307.07668 * 25 23 6 45 45 H 1.08999 * 109.46908 * 67.08095 * 25 23 6 46 46 H 1.09000 * 109.49417 * 52.79267 * 26 3 2 47 47 H 1.09000 * 109.52048 * 292.71817 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6630 2.0695 1.2499 5 6 2.0287 3.5534 1.1381 6 7 3.4446 3.6579 0.7540 7 16 4.4890 4.6166 1.6099 8 8 3.8413 4.9186 2.8382 9 8 5.7617 3.9890 1.5362 10 7 4.6253 6.0481 0.7888 11 6 3.6047 7.0864 0.9522 12 6 5.7664 6.2764 -0.1011 13 1 6.4633 5.4422 -0.0196 14 6 5.2727 6.3891 -1.5449 15 6 6.4630 7.5533 0.2927 16 1 6.0926 8.1367 1.1226 17 6 7.5727 7.9773 -0.4072 18 7 8.0235 7.2672 -1.4181 19 14 8.4358 9.5605 0.0805 20 1 7.7366 10.1684 1.2411 21 1 9.8431 9.2636 0.4502 22 1 8.4137 10.5087 -1.0622 23 6 3.9082 2.8888 -0.4109 24 1 3.4675 3.2991 -1.3194 25 6 5.4341 2.9585 -0.4984 26 6 3.4685 1.4311 -0.2380 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5917 1.9711 1.4256 33 1 2.2102 1.6211 2.0791 34 1 1.4073 4.0274 0.3784 35 1 1.8699 4.0430 2.0989 36 1 3.8830 7.7429 1.7766 37 1 3.5284 7.6686 0.0339 38 1 2.6433 6.6202 1.1677 39 1 6.1218 6.5585 -2.2071 40 1 4.7688 5.4654 -1.8297 41 1 4.5758 7.2232 -1.6265 42 1 8.8045 7.5652 -1.9103 43 1 5.7661 2.4961 -1.4280 44 1 5.7521 4.0009 -0.4773 45 1 5.8712 2.4281 0.3476 46 1 3.7067 0.8699 -1.1416 47 1 3.9913 0.9918 0.6115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352602482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:26 Heat of formation + Delta-G solvation = -69.058978 kcal Electronic energy + Delta-G solvation = -27790.888009 eV Core-core repulsion = 24135.565797 eV Total energy + Delta-G solvation = -3655.322213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25173 -38.65344 -37.87636 -36.91556 -36.36193 -34.51388 -33.37840 -31.47775 -30.94524 -28.63531 -27.22995 -27.05983 -26.11491 -24.26092 -22.64635 -22.34068 -21.52372 -19.70856 -18.76662 -18.41423 -18.05755 -17.37534 -16.75380 -16.47547 -16.23722 -15.95049 -15.62152 -15.45260 -15.16944 -14.84873 -14.69610 -14.28412 -14.14015 -13.80999 -13.66669 -13.42315 -13.23040 -13.11949 -13.01871 -12.97660 -12.79933 -12.77692 -12.62134 -12.48272 -12.31337 -12.27023 -12.17244 -12.11155 -11.95664 -11.86308 -11.61415 -11.25794 -11.01276 -10.47797 -10.11832 -9.63523 -9.27997 -8.11158 -6.24079 -0.35437 1.40975 1.44034 1.54310 1.99713 2.42489 2.57604 2.87690 3.17109 3.37863 3.58044 3.89608 4.04352 4.10554 4.15097 4.25428 4.31183 4.40890 4.46710 4.62290 4.64245 4.68736 4.71616 4.72957 4.78587 4.83815 4.94651 4.95549 5.01210 5.03981 5.13908 5.14272 5.17093 5.19158 5.20972 5.41579 5.50953 5.58444 5.65263 5.84178 5.93961 6.05230 6.14063 6.16225 6.33346 6.84030 7.44521 8.93045 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.004112 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.395352 B = 6808.392743 C = 7188.676038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.540 5.540 4 C 0.044 3.956 5 C 0.115 3.885 6 N -1.002 6.002 7 S 2.785 3.215 8 O -1.015 7.015 9 O -1.003 7.003 10 N -0.999 5.999 11 C 0.108 3.892 12 C 0.269 3.731 13 H 0.040 0.960 14 C -0.135 4.135 15 C -0.540 4.540 16 H 0.055 0.945 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.275 1.275 23 C 0.165 3.835 24 H 0.089 0.911 25 C -0.190 4.190 26 C 0.054 3.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.113 0.887 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 -12.294 -0.348 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.086 4.086 5 C -0.010 4.010 6 N -0.844 5.844 7 S 2.798 3.202 8 O -0.999 6.999 9 O -0.987 6.987 10 N -0.840 5.840 11 C -0.038 4.038 12 C 0.165 3.835 13 H 0.058 0.942 14 C -0.194 4.194 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.181 4.181 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.059 3.941 24 H 0.107 0.893 25 C -0.248 4.248 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.131 0.869 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.296 -12.258 -0.017 19.602 hybrid contribution 1.235 0.688 0.621 1.544 sum -14.061 -11.571 0.605 18.220 Atomic orbital electron populations 1.21772 0.93563 1.02352 1.02440 1.22174 0.97112 0.87537 1.01116 1.61958 1.13067 1.16783 1.34690 1.22512 1.02478 0.93391 0.90182 1.21741 0.79878 0.97531 1.01810 1.58239 1.21613 1.60156 1.44431 1.01649 0.72725 0.72881 0.72987 1.93468 1.77648 1.85288 1.43507 1.93637 1.42548 1.75348 1.87192 1.57665 1.33375 1.30555 1.62409 1.21261 0.88889 0.91503 1.02156 1.18542 0.82002 0.96319 0.86683 0.94204 1.21931 1.00450 0.98450 0.98589 1.21676 1.12414 1.08309 1.15523 0.92694 1.25598 0.97423 1.00063 0.94976 1.69974 1.24667 1.39569 1.20747 0.85578 0.78203 0.79941 0.78322 1.19594 1.20975 1.20008 1.21081 0.93668 0.91396 0.87956 0.89307 1.22799 0.93944 1.04385 1.03714 1.22463 0.87884 0.95416 1.01772 0.92482 0.92041 0.91043 0.89872 0.95200 0.86932 0.95591 0.89137 0.88951 0.94262 0.90565 0.90576 0.91467 0.94568 0.94341 0.92636 0.89612 0.92164 0.91038 0.87736 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.84 71.98 0.71 -1.03 16 2 C 0.05 0.74 5.68 86.30 0.49 1.23 16 3 N -0.54 -10.79 4.63 -895.23 -4.14 -14.93 16 4 C 0.04 0.89 5.46 86.38 0.47 1.36 16 5 C 0.12 2.76 6.68 86.35 0.58 3.33 16 6 N -1.00 -30.54 3.39 -489.90 -1.66 -32.20 16 7 S 2.78 111.48 5.62 -56.49 -0.32 111.17 16 8 O -1.02 -42.97 15.96 -128.00 -2.04 -45.01 16 9 O -1.00 -46.45 12.01 -128.00 -1.54 -47.98 16 10 N -1.00 -41.84 3.12 -520.44 -1.62 -43.46 16 11 C 0.11 3.82 9.32 127.77 1.19 5.01 16 12 C 0.27 13.16 1.84 44.25 0.08 13.24 16 13 H 0.04 2.21 5.18 -2.39 -0.01 2.20 16 14 C -0.13 -6.03 8.78 71.98 0.63 -5.40 16 15 C -0.54 -29.30 8.31 25.60 0.21 -29.09 16 16 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 17 C 0.02 1.06 5.30 84.65 0.45 1.51 16 18 N -0.91 -50.76 11.32 21.44 0.24 -50.51 16 19 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.16 4.61 3.67 44.96 0.17 4.77 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 C -0.19 -6.38 7.57 71.98 0.54 -5.84 16 26 C 0.05 1.24 4.91 86.38 0.42 1.66 16 27 H 0.06 0.67 6.40 -2.39 -0.02 0.65 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.14 7.97 -2.39 -0.02 1.13 16 31 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 32 H 0.11 1.71 6.16 -2.38 -0.01 1.69 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.26 6.79 -2.39 -0.02 2.25 16 36 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.08 2.61 6.73 -2.39 -0.02 2.60 16 38 H 0.08 2.16 7.99 -2.39 -0.02 2.14 16 39 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 40 H 0.04 1.40 7.71 -2.38 -0.02 1.38 16 41 H 0.04 1.62 6.89 -2.39 -0.02 1.61 16 42 H 0.26 13.98 8.31 -92.71 -0.77 13.20 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 2.45 2.69 -2.39 -0.01 2.45 16 45 H 0.07 2.61 6.58 -2.39 -0.02 2.59 16 46 H 0.10 1.94 7.99 -2.39 -0.02 1.93 16 47 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 Total: -1.00 -66.26 358.18 -2.16 -68.42 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.95 Total: 18.39 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.95 Total: -9.24 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -7.19 Total: -141.10 kcal Atomic # 8 Polarization: -89.42 SS G_CDS: -3.58 Total: -93.00 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 111.48 SS G_CDS: -0.32 Total: 111.17 kcal Total: -66.26 -2.16 -68.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.641 kcal (2) G-P(sol) polarization free energy of solvation -66.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds