Wall clock time and date at job start Fri Apr 10 2020 18:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46956 * 2 1 4 4 C 1.46892 * 111.00138 * 66.04509 * 3 2 1 5 5 C 1.53237 * 109.34017 * 172.74425 * 4 3 2 6 6 N 1.47079 * 108.52297 * 53.83474 * 5 4 3 7 7 S 1.65595 * 120.88808 * 128.79114 * 6 5 4 8 8 O 1.42099 * 106.40274 * 213.54485 * 7 6 5 9 9 O 1.42104 * 106.39947 * 346.46520 * 7 6 5 10 10 N 1.65599 * 107.21871 * 100.00243 * 7 6 5 11 11 C 1.46496 * 120.00064 * 278.69998 * 10 7 6 12 12 C 1.46497 * 119.99953 * 98.69633 * 10 7 6 13 13 H 1.09002 * 109.47199 * 5.46084 * 12 10 7 14 14 C 1.52997 * 109.47548 * 245.45806 * 12 10 7 15 15 C 1.50703 * 109.47000 * 125.45589 * 12 10 7 16 16 H 1.08000 * 119.99826 * 4.19636 * 15 12 10 17 17 C 1.37880 * 120.00166 * 184.18906 * 15 12 10 18 18 N 1.31518 * 119.99683 * 7.57045 * 17 15 12 19 19 Si 1.86801 * 120.00261 * 187.57353 * 17 15 12 20 20 H 1.48503 * 109.46755 * 94.97944 * 19 17 15 21 21 H 1.48499 * 109.47147 * 214.98279 * 19 17 15 22 22 H 1.48500 * 109.46792 * 334.98291 * 19 17 15 23 23 C 1.47083 * 118.23265 * 308.81475 * 6 5 4 24 24 H 1.08999 * 109.62598 * 291.47441 * 23 6 5 25 25 C 1.52996 * 109.62972 * 171.09011 * 23 6 5 26 26 C 1.46897 * 111.00136 * 301.74026 * 3 2 1 27 27 H 1.08998 * 109.47372 * 60.00449 * 1 2 3 28 28 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47433 * 300.00126 * 1 2 3 30 30 H 1.09004 * 109.47243 * 240.00131 * 2 1 3 31 31 H 1.09002 * 109.47139 * 119.99996 * 2 1 3 32 32 H 1.08998 * 109.49375 * 292.70479 * 4 3 2 33 33 H 1.09008 * 109.49376 * 52.78751 * 4 3 2 34 34 H 1.09003 * 109.62938 * 173.53891 * 5 4 3 35 35 H 1.08997 * 109.63078 * 293.92516 * 5 4 3 36 36 H 1.08995 * 109.47315 * 89.99817 * 11 10 7 37 37 H 1.09000 * 109.47196 * 209.99993 * 11 10 7 38 38 H 1.09005 * 109.47309 * 329.99756 * 11 10 7 39 39 H 1.08998 * 109.46929 * 303.24829 * 14 12 10 40 40 H 1.09003 * 109.46896 * 63.24372 * 14 12 10 41 41 H 1.08992 * 109.47429 * 183.24507 * 14 12 10 42 42 H 0.97000 * 119.99919 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47328 * 48.27901 * 25 23 6 44 44 H 1.09004 * 109.47412 * 168.27697 * 25 23 6 45 45 H 1.08997 * 109.47135 * 288.27664 * 25 23 6 46 46 H 1.08999 * 109.49281 * 307.21842 * 26 3 2 47 47 H 1.09008 * 109.49043 * 67.29672 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2532 5 6 2.3498 3.4398 1.2906 6 7 1.9942 4.1707 0.0648 7 16 1.3909 5.7111 0.1384 8 8 0.4723 5.8342 -0.9388 9 8 1.0329 5.9374 1.4949 10 7 2.6420 6.7440 -0.1935 11 6 3.5947 7.1029 0.8598 12 6 2.7960 7.2988 -1.5406 13 1 1.9477 6.9993 -2.1561 14 6 4.0899 6.7718 -2.1644 15 6 2.8528 8.8026 -1.4610 16 1 2.8496 9.2929 -0.4988 17 6 2.9091 9.5525 -2.6167 18 7 2.7634 8.9695 -3.7866 19 14 3.1922 11.3965 -2.5208 20 1 4.6398 11.6841 -2.6846 21 1 2.4281 12.0714 -3.6006 22 1 2.7337 11.8996 -1.2010 23 6 2.1881 3.4970 -1.2281 24 1 3.2539 3.3745 -1.4209 25 6 1.5570 4.3331 -2.3432 26 6 1.5149 2.1218 -1.1663 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5891 2.1946 1.3086 33 1 2.0101 1.4697 2.0994 34 1 2.0040 3.9960 2.1619 35 1 3.4310 3.3118 1.3434 36 1 4.4214 6.3926 0.8594 37 1 3.9780 8.1067 0.6765 38 1 3.0935 7.0765 1.8275 39 1 4.9322 7.0216 -1.5192 40 1 4.0254 5.6894 -2.2749 41 1 4.2339 7.2291 -3.1432 42 1 2.8026 9.4971 -4.5996 43 1 1.8738 5.3712 -2.2427 44 1 1.8765 3.9478 -3.3115 45 1 0.4710 4.2759 -2.2698 46 1 1.7422 1.5643 -2.0749 47 1 0.4359 2.2488 -1.0772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352602483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:29 Heat of formation + Delta-G solvation = -47.240562 kcal Electronic energy + Delta-G solvation = -27931.505208 eV Core-core repulsion = 24277.129113 eV Total energy + Delta-G solvation = -3654.376095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.36307 -37.05170 -36.16381 -35.50215 -35.13719 -32.54528 -32.26924 -30.25866 -29.23995 -27.29219 -25.80647 -25.38626 -25.14191 -23.10210 -21.91377 -20.82188 -20.14408 -18.08168 -17.15717 -16.87829 -16.29711 -15.94902 -15.54322 -15.38025 -15.01747 -14.66891 -14.33997 -13.98476 -13.75586 -13.42923 -13.23894 -12.92475 -12.71450 -12.50763 -12.30458 -12.21698 -12.03845 -11.96038 -11.68879 -11.52104 -11.43434 -11.27827 -11.21470 -11.04019 -10.93419 -10.83330 -10.77669 -10.66563 -10.45597 -10.25243 -10.04203 -9.89644 -9.20796 -8.93540 -8.41309 -8.31424 -7.95768 -6.10076 -4.13765 1.19775 3.27549 3.35201 3.38082 3.43015 3.82129 4.08767 4.39434 4.72447 4.76887 4.84453 4.98513 5.09797 5.16701 5.20351 5.22893 5.30501 5.38004 5.42065 5.57885 5.66614 5.68904 5.73228 5.73621 5.85386 5.91455 5.97992 6.07571 6.13911 6.29166 6.37940 6.41901 6.64130 6.71207 6.80026 6.84257 6.90509 6.97189 6.98600 7.03468 7.43636 7.64403 7.78861 7.97161 8.26834 8.88187 9.50601 10.97538 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.004246 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.647991 B = 6592.921849 C = 6990.233912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 N -0.536 5.536 4 C 0.043 3.957 5 C 0.123 3.877 6 N -1.010 6.010 7 S 2.776 3.224 8 O -0.971 6.971 9 O -0.999 6.999 10 N -0.989 5.989 11 C 0.096 3.904 12 C 0.260 3.740 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.524 4.524 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.163 3.837 24 H 0.078 0.922 25 C -0.192 4.192 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.016 0.984 41 H 0.078 0.922 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -16.091 6.731 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.259 5.259 4 C -0.087 4.087 5 C -0.004 4.004 6 N -0.849 5.849 7 S 2.788 3.212 8 O -0.955 6.955 9 O -0.983 6.983 10 N -0.831 5.831 11 C -0.050 4.050 12 C 0.157 3.843 13 H 0.093 0.907 14 C -0.204 4.204 15 C -0.564 4.564 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.057 3.943 24 H 0.096 0.904 25 C -0.250 4.250 26 C -0.082 4.082 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.068 -15.804 6.714 17.171 hybrid contribution -0.242 0.845 -0.076 0.882 sum -0.175 -14.959 6.639 16.367 Atomic orbital electron populations 1.22465 0.98320 1.02204 1.02391 1.22165 0.92856 0.89952 1.02703 1.62102 1.59361 1.01932 1.02514 1.22445 0.98550 0.95291 0.92369 1.21447 1.00238 0.91795 0.86877 1.58542 1.82350 1.32596 1.11379 1.02110 0.74362 0.72152 0.72568 1.93670 1.61549 1.85774 1.54508 1.93487 1.82772 1.84888 1.37165 1.57689 1.45956 1.59640 1.19840 1.21295 0.92172 1.02388 0.89169 1.18882 0.95619 0.93695 0.76126 0.90744 1.22091 0.99043 0.96745 1.02537 1.21309 1.51594 0.90444 0.93018 0.91774 1.24912 0.94865 0.98670 0.95284 1.69937 1.48840 1.36067 0.97520 0.86529 0.78155 0.85115 0.77912 1.20652 1.21165 1.19819 1.20990 1.00098 0.91117 0.82124 0.90431 1.22900 1.03161 1.02019 0.96881 1.22558 0.97716 0.94486 0.93447 0.92194 0.92199 0.92529 0.90626 0.90782 0.94239 0.89903 0.88720 0.91028 0.94462 0.89702 0.92292 0.94762 0.96470 0.90356 0.92672 0.88763 0.91653 0.89905 0.89892 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 9.22 37.16 0.34 -1.35 16 2 C 0.05 0.46 6.07 -3.82 -0.02 0.43 16 3 N -0.54 -6.03 4.83 -234.32 -1.13 -7.17 16 4 C 0.04 0.49 5.16 -3.71 -0.02 0.47 16 5 C 0.12 1.60 6.69 -3.60 -0.02 1.57 16 6 N -1.01 -15.97 3.39 -106.20 -0.36 -16.33 16 7 S 2.78 55.37 5.65 -107.50 -0.61 54.77 16 8 O -0.97 -21.97 12.26 -57.17 -0.70 -22.68 16 9 O -1.00 -21.12 15.35 -57.17 -0.88 -22.00 16 10 N -0.99 -20.59 3.12 -115.86 -0.36 -20.95 16 11 C 0.10 1.73 9.83 59.84 0.59 2.31 16 12 C 0.26 6.23 1.68 -69.08 -0.12 6.12 16 13 H 0.08 1.99 5.18 -51.93 -0.27 1.72 16 14 C -0.14 -3.19 8.94 37.16 0.33 -2.86 16 15 C -0.52 -13.90 7.99 -34.44 -0.28 -14.17 16 16 H 0.06 1.69 6.81 -52.49 -0.36 1.33 16 17 C 0.07 1.76 5.20 -17.82 -0.09 1.67 16 18 N -0.89 -24.49 11.98 55.43 0.66 -23.83 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.16 2.41 3.66 -67.49 -0.25 2.16 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 25 C -0.19 -3.25 7.46 37.16 0.28 -2.97 16 26 C 0.05 0.59 4.23 -3.70 -0.02 0.57 16 27 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 6.72 -51.93 -0.35 0.18 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 32 H 0.04 0.47 6.83 -51.93 -0.35 0.12 16 33 H 0.08 0.75 8.04 -51.92 -0.42 0.34 16 34 H 0.09 1.25 6.76 -51.93 -0.35 0.90 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.59 6.54 -51.93 -0.34 1.25 16 38 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 39 H 0.03 0.71 7.72 -51.93 -0.40 0.31 16 40 H 0.02 0.32 7.45 -51.93 -0.39 -0.06 16 41 H 0.08 1.91 6.65 -51.93 -0.35 1.56 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.09 1.91 2.17 -51.93 -0.11 1.79 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.47 6.82 -51.93 -0.35 1.12 16 46 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 47 H 0.04 0.57 6.64 -51.92 -0.34 0.22 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -30.47 354.88 -9.92 -40.40 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.60 Total: 2.68 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 0.73 Total: -6.06 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.19 Total: -68.27 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.58 Total: -44.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.61 Total: 54.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.47 -9.92 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.846 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds