Wall clock time and date at job start Fri Apr 10 2020 18:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46956 * 2 1 4 4 C 1.46892 * 111.00138 * 66.04509 * 3 2 1 5 5 C 1.53237 * 109.34017 * 172.74425 * 4 3 2 6 6 N 1.47079 * 108.52297 * 53.83474 * 5 4 3 7 7 S 1.65595 * 120.88808 * 128.79114 * 6 5 4 8 8 O 1.42099 * 106.40274 * 213.54485 * 7 6 5 9 9 O 1.42104 * 106.39947 * 346.46520 * 7 6 5 10 10 N 1.65599 * 107.21871 * 100.00243 * 7 6 5 11 11 C 1.46496 * 120.00064 * 278.69998 * 10 7 6 12 12 C 1.46497 * 119.99953 * 98.69633 * 10 7 6 13 13 H 1.09002 * 109.47199 * 5.46084 * 12 10 7 14 14 C 1.52997 * 109.47548 * 245.45806 * 12 10 7 15 15 C 1.50703 * 109.47000 * 125.45589 * 12 10 7 16 16 H 1.08000 * 119.99826 * 4.19636 * 15 12 10 17 17 C 1.37880 * 120.00166 * 184.18906 * 15 12 10 18 18 N 1.31518 * 119.99683 * 7.57045 * 17 15 12 19 19 Si 1.86801 * 120.00261 * 187.57353 * 17 15 12 20 20 H 1.48503 * 109.46755 * 94.97944 * 19 17 15 21 21 H 1.48499 * 109.47147 * 214.98279 * 19 17 15 22 22 H 1.48500 * 109.46792 * 334.98291 * 19 17 15 23 23 C 1.47083 * 118.23265 * 308.81475 * 6 5 4 24 24 H 1.08999 * 109.62598 * 291.47441 * 23 6 5 25 25 C 1.52996 * 109.62972 * 171.09011 * 23 6 5 26 26 C 1.46897 * 111.00136 * 301.74026 * 3 2 1 27 27 H 1.08998 * 109.47372 * 60.00449 * 1 2 3 28 28 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47433 * 300.00126 * 1 2 3 30 30 H 1.09004 * 109.47243 * 240.00131 * 2 1 3 31 31 H 1.09002 * 109.47139 * 119.99996 * 2 1 3 32 32 H 1.08998 * 109.49375 * 292.70479 * 4 3 2 33 33 H 1.09008 * 109.49376 * 52.78751 * 4 3 2 34 34 H 1.09003 * 109.62938 * 173.53891 * 5 4 3 35 35 H 1.08997 * 109.63078 * 293.92516 * 5 4 3 36 36 H 1.08995 * 109.47315 * 89.99817 * 11 10 7 37 37 H 1.09000 * 109.47196 * 209.99993 * 11 10 7 38 38 H 1.09005 * 109.47309 * 329.99756 * 11 10 7 39 39 H 1.08998 * 109.46929 * 303.24829 * 14 12 10 40 40 H 1.09003 * 109.46896 * 63.24372 * 14 12 10 41 41 H 1.08992 * 109.47429 * 183.24507 * 14 12 10 42 42 H 0.97000 * 119.99919 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47328 * 48.27901 * 25 23 6 44 44 H 1.09004 * 109.47412 * 168.27697 * 25 23 6 45 45 H 1.08997 * 109.47135 * 288.27664 * 25 23 6 46 46 H 1.08999 * 109.49281 * 307.21842 * 26 3 2 47 47 H 1.09008 * 109.49043 * 67.29672 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2532 5 6 2.3498 3.4398 1.2906 6 7 1.9942 4.1707 0.0648 7 16 1.3909 5.7111 0.1384 8 8 0.4723 5.8342 -0.9388 9 8 1.0329 5.9374 1.4949 10 7 2.6420 6.7440 -0.1935 11 6 3.5947 7.1029 0.8598 12 6 2.7960 7.2988 -1.5406 13 1 1.9477 6.9993 -2.1561 14 6 4.0899 6.7718 -2.1644 15 6 2.8528 8.8026 -1.4610 16 1 2.8496 9.2929 -0.4988 17 6 2.9091 9.5525 -2.6167 18 7 2.7634 8.9695 -3.7866 19 14 3.1922 11.3965 -2.5208 20 1 4.6398 11.6841 -2.6846 21 1 2.4281 12.0714 -3.6006 22 1 2.7337 11.8996 -1.2010 23 6 2.1881 3.4970 -1.2281 24 1 3.2539 3.3745 -1.4209 25 6 1.5570 4.3331 -2.3432 26 6 1.5149 2.1218 -1.1663 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5891 2.1946 1.3086 33 1 2.0101 1.4697 2.0994 34 1 2.0040 3.9960 2.1619 35 1 3.4310 3.3118 1.3434 36 1 4.4214 6.3926 0.8594 37 1 3.9780 8.1067 0.6765 38 1 3.0935 7.0765 1.8275 39 1 4.9322 7.0216 -1.5192 40 1 4.0254 5.6894 -2.2749 41 1 4.2339 7.2291 -3.1432 42 1 2.8026 9.4971 -4.5996 43 1 1.8738 5.3712 -2.2427 44 1 1.8765 3.9478 -3.3115 45 1 0.4710 4.2759 -2.2698 46 1 1.7422 1.5643 -2.0749 47 1 0.4359 2.2488 -1.0772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352602483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:28 Heat of formation + Delta-G solvation = -69.364385 kcal Electronic energy + Delta-G solvation = -27932.464569 eV Core-core repulsion = 24277.129113 eV Total energy + Delta-G solvation = -3655.335456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35876 -38.66606 -37.87298 -36.91357 -36.43866 -34.48351 -33.39765 -31.11265 -31.01155 -28.44223 -27.24917 -27.02574 -26.56587 -24.05546 -23.01882 -22.58343 -21.17437 -19.61533 -18.80721 -18.31992 -17.99699 -17.41429 -16.73234 -16.46033 -16.31287 -15.95602 -15.64491 -15.19257 -15.06472 -14.75171 -14.67940 -14.47676 -14.07603 -13.79441 -13.77006 -13.36581 -13.30367 -13.23228 -13.12531 -12.98168 -12.82991 -12.73243 -12.66118 -12.56911 -12.38596 -12.22471 -12.13860 -12.13309 -11.91741 -11.84833 -11.58005 -11.30487 -11.04610 -10.43758 -10.10901 -9.62745 -9.21864 -8.13099 -6.23176 -0.34249 1.42501 1.44388 1.53836 2.01116 2.43017 2.57802 2.93954 3.17130 3.39353 3.59755 3.91013 4.08969 4.12901 4.18371 4.25249 4.29999 4.38095 4.44352 4.55236 4.65921 4.68940 4.71599 4.76820 4.77966 4.82417 4.93355 4.95804 5.01151 5.02794 5.06350 5.12459 5.14365 5.18027 5.26368 5.34058 5.48238 5.57792 5.65009 5.79487 5.92273 6.05921 6.13537 6.16262 6.31245 6.85064 7.44290 8.93530 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025880 B = 0.004246 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.647991 B = 6592.921849 C = 6990.233912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 N -0.538 5.538 4 C 0.044 3.956 5 C 0.115 3.885 6 N -1.002 6.002 7 S 2.786 3.214 8 O -1.005 7.005 9 O -1.016 7.016 10 N -0.998 5.998 11 C 0.092 3.908 12 C 0.266 3.734 13 H 0.044 0.956 14 C -0.129 4.129 15 C -0.542 4.542 16 H 0.059 0.941 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.953 3.047 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.164 3.836 24 H 0.089 0.911 25 C -0.192 4.192 26 C 0.053 3.947 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -17.947 7.745 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.075 4.075 3 N -0.261 5.261 4 C -0.085 4.085 5 C -0.010 4.010 6 N -0.844 5.844 7 S 2.798 3.202 8 O -0.989 6.989 9 O -1.000 7.000 10 N -0.839 5.839 11 C -0.053 4.053 12 C 0.162 3.838 13 H 0.061 0.939 14 C -0.189 4.189 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.197 1.197 23 C 0.059 3.941 24 H 0.107 0.893 25 C -0.250 4.250 26 C -0.077 4.077 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.376 -17.657 7.756 19.335 hybrid contribution -0.682 1.329 -0.348 1.534 sum 0.695 -16.328 7.407 17.943 Atomic orbital electron populations 1.22435 0.98401 1.02908 1.01373 1.22259 0.92720 0.88497 1.04062 1.62123 1.59355 1.02843 1.01823 1.22477 0.97816 0.94685 0.93541 1.21739 1.01630 0.92330 0.85270 1.58233 1.82152 1.31000 1.13032 1.01588 0.74063 0.72950 0.71559 1.93636 1.63088 1.86599 1.55584 1.93454 1.83128 1.85632 1.37747 1.57608 1.46575 1.60541 1.19191 1.21450 0.92616 1.02584 0.88676 1.18550 0.95268 0.92540 0.77418 0.93855 1.21870 0.98257 0.97841 1.00941 1.21661 1.51384 0.92232 0.92864 0.92287 1.25624 0.94769 1.02572 0.95054 1.70046 1.49644 1.37420 0.97979 0.85626 0.78411 0.80444 0.77644 1.19560 1.21189 1.19725 1.21074 1.00684 0.91724 0.80651 0.89307 1.22814 1.02330 1.00792 0.99066 1.22466 0.96742 0.93412 0.95061 0.93434 0.90640 0.93348 0.89603 0.89124 0.95318 0.87016 0.89081 0.89129 0.91526 0.90882 0.91367 0.93824 0.94238 0.92979 0.92659 0.91789 0.89751 0.91505 0.87995 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 9.22 71.98 0.66 -2.25 16 2 C 0.05 0.75 6.07 86.30 0.52 1.27 16 3 N -0.54 -10.49 4.83 -895.27 -4.32 -14.81 16 4 C 0.04 0.88 5.16 86.38 0.45 1.33 16 5 C 0.12 2.74 6.69 86.35 0.58 3.32 16 6 N -1.00 -30.58 3.39 -489.92 -1.66 -32.24 16 7 S 2.79 111.96 5.65 -56.49 -0.32 111.65 16 8 O -1.01 -47.18 12.26 -128.00 -1.57 -48.75 16 9 O -1.02 -42.97 15.35 -128.00 -1.97 -44.93 16 10 N -1.00 -41.59 3.12 -520.46 -1.62 -43.21 16 11 C 0.09 3.22 9.83 127.77 1.26 4.48 16 12 C 0.27 13.01 1.68 44.25 0.07 13.08 16 13 H 0.04 2.42 5.18 -2.39 -0.01 2.41 16 14 C -0.13 -5.71 8.94 71.98 0.64 -5.07 16 15 C -0.54 -29.22 7.99 25.60 0.20 -29.02 16 16 H 0.06 3.16 6.81 -2.91 -0.02 3.14 16 17 C 0.02 1.10 5.20 84.65 0.44 1.54 16 18 N -0.91 -51.49 11.98 21.45 0.26 -51.24 16 19 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.16 4.62 3.66 44.96 0.16 4.79 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 C -0.19 -6.54 7.46 71.98 0.54 -6.01 16 26 C 0.05 1.21 4.23 86.38 0.37 1.57 16 27 H 0.05 0.84 6.54 -2.39 -0.02 0.82 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.81 6.72 -2.39 -0.02 0.79 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 32 H 0.03 0.64 6.83 -2.39 -0.02 0.62 16 33 H 0.11 1.60 8.04 -2.38 -0.02 1.58 16 34 H 0.09 2.24 6.76 -2.39 -0.02 2.23 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.71 6.54 -2.39 -0.02 2.69 16 38 H 0.07 2.22 7.13 -2.38 -0.02 2.21 16 39 H 0.04 1.78 7.72 -2.39 -0.02 1.77 16 40 H 0.04 1.51 7.45 -2.39 -0.02 1.49 16 41 H 0.05 2.56 6.65 -2.39 -0.02 2.55 16 42 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.06 2.64 2.17 -2.39 -0.01 2.64 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.07 2.46 6.82 -2.39 -0.02 2.44 16 46 H 0.10 1.94 8.11 -2.39 -0.02 1.92 16 47 H 0.03 0.80 6.64 -2.38 -0.02 0.79 16 Total: -1.00 -66.72 354.88 -2.32 -69.04 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.96 Total: 20.34 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.90 Total: -10.97 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -7.35 Total: -141.50 kcal Atomic # 8 Polarization: -90.15 SS G_CDS: -3.53 Total: -93.68 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 111.96 SS G_CDS: -0.32 Total: 111.65 kcal Total: -66.72 -2.32 -69.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.322 kcal (2) G-P(sol) polarization free energy of solvation -66.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds