Wall clock time and date at job start Fri Apr 10 2020 18:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47283 * 2 1 4 4 C 1.46502 * 120.00082 * 276.91254 * 3 2 1 5 5 C 1.50700 * 109.47147 * 275.00150 * 4 3 2 6 6 H 1.08000 * 120.00265 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99500 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99470 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00575 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47230 * 90.00154 * 9 7 5 11 11 H 1.48497 * 109.47170 * 209.99982 * 9 7 5 12 12 H 1.48503 * 109.46969 * 330.00147 * 9 7 5 13 13 S 1.65606 * 120.00055 * 96.91778 * 3 2 1 14 14 O 1.42103 * 106.39910 * 352.75946 * 13 3 2 15 15 O 1.42101 * 106.40112 * 219.84130 * 13 3 2 16 16 N 1.65594 * 107.22179 * 106.29951 * 13 3 2 17 17 C 1.47081 * 120.88005 * 97.52965 * 16 13 3 18 18 C 1.53245 * 108.68178 * 128.74051 * 17 16 13 19 19 N 1.47327 * 109.10632 * 53.75211 * 18 17 16 20 20 C 1.46906 * 110.92935 * 172.82936 * 19 18 17 21 21 C 1.53008 * 109.46810 * 314.37576 * 20 19 18 22 22 C 1.46900 * 111.37098 * 296.99491 * 19 18 17 23 23 C 1.47079 * 120.88438 * 277.55881 * 16 13 3 24 24 H 1.08994 * 109.62980 * 111.45088 * 23 16 13 25 25 C 1.53009 * 109.62523 * 351.06225 * 23 16 13 26 26 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46988 * 300.00271 * 1 2 3 28 28 H 1.08997 * 109.47086 * 59.99463 * 1 2 3 29 29 H 1.09002 * 109.46988 * 239.99729 * 2 1 3 30 30 H 1.08999 * 109.46816 * 120.00084 * 2 1 3 31 31 H 1.08997 * 109.47130 * 35.00549 * 4 3 2 32 32 H 1.09000 * 109.46941 * 155.00128 * 4 3 2 33 33 H 0.97003 * 120.00085 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.63375 * 248.54615 * 17 16 13 35 35 H 1.09002 * 109.63062 * 8.93657 * 17 16 13 36 36 H 1.08995 * 109.49277 * 173.88989 * 18 17 16 37 37 H 1.08994 * 109.49451 * 293.97037 * 18 17 16 38 38 H 1.08993 * 109.47118 * 74.37667 * 20 19 18 39 39 H 1.08998 * 109.46943 * 194.37898 * 20 19 18 40 40 H 1.08998 * 109.47105 * 60.00421 * 21 20 19 41 41 H 1.08998 * 109.46880 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47160 * 299.99840 * 21 20 19 43 43 H 1.09000 * 109.48923 * 303.16996 * 22 19 18 44 44 H 1.08993 * 109.49482 * 183.08451 * 22 19 18 45 45 H 1.08998 * 109.46468 * 53.14709 * 25 23 16 46 46 H 1.08997 * 109.46793 * 173.14387 * 25 23 16 47 47 H 1.08997 * 109.46921 * 293.14463 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1185 2.1227 -1.2595 5 6 3.4349 1.8099 -1.9232 6 1 4.1277 1.1273 -1.4536 7 6 3.7550 2.3959 -3.1294 8 7 4.9036 2.1225 -3.7089 9 14 2.5571 3.5770 -3.9414 10 1 2.8352 4.9603 -3.4785 11 1 2.7160 3.5072 -5.4162 12 1 1.1676 3.2023 -3.5749 13 16 2.4572 2.1042 1.4237 14 8 2.0891 1.2050 2.4606 15 8 1.9889 3.4441 1.3543 16 7 4.1110 2.1873 1.4420 17 6 4.8094 3.4192 1.0448 18 6 5.8115 3.7912 2.1429 19 7 6.6853 2.6354 2.4099 20 6 7.7689 2.9990 3.3329 21 6 8.3826 4.3317 2.8990 22 6 5.9187 1.4920 2.9226 23 6 4.9204 1.0309 1.8553 24 1 5.4606 0.6358 0.9950 25 6 4.0092 -0.0542 2.4328 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.3009 1.8313 -1.9187 32 1 2.0587 3.1921 -1.0573 33 1 5.1291 2.5351 -4.5574 34 1 5.3390 3.2537 0.1066 35 1 4.0869 4.2258 0.9200 36 1 6.4124 4.6393 1.8147 37 1 5.2727 4.0569 3.0523 38 1 7.3695 3.0944 4.3425 39 1 8.5350 2.2238 3.3169 40 1 7.6165 5.1068 2.9149 41 1 9.1869 4.6012 3.5835 42 1 8.7821 4.2362 1.8893 43 1 5.3786 1.7898 3.8213 44 1 6.5996 0.6750 3.1609 45 1 3.2168 -0.2806 1.7194 46 1 4.5930 -0.9543 2.6251 47 1 3.5688 0.2994 3.3650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352603976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:31 Heat of formation + Delta-G solvation = -67.592365 kcal Electronic energy + Delta-G solvation = -28041.785507 eV Core-core repulsion = 24386.526891 eV Total energy + Delta-G solvation = -3655.258616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23395 -38.63519 -37.77181 -36.95043 -36.40667 -34.63755 -33.34277 -31.82897 -31.37997 -28.92893 -28.74061 -26.13739 -24.58329 -24.39750 -23.12457 -22.40923 -21.37878 -19.69005 -19.01356 -18.68258 -18.14632 -17.49772 -16.71844 -16.41156 -16.22231 -15.90536 -15.83950 -15.62535 -15.37730 -14.86524 -14.57493 -14.38616 -14.28963 -14.03404 -13.77907 -13.51132 -13.47264 -13.43529 -13.14318 -13.02487 -12.85154 -12.77539 -12.65287 -12.55129 -12.28092 -12.21138 -12.14120 -12.05261 -11.97323 -11.66106 -11.64910 -11.46484 -11.21007 -10.73567 -10.06035 -9.73937 -9.19629 -8.24033 -6.27144 -0.31309 1.36555 1.40085 1.47166 1.89191 2.36115 2.51577 2.90275 3.09849 3.36033 3.59170 3.85509 3.96868 4.06414 4.13766 4.24366 4.31427 4.35514 4.39898 4.41772 4.44711 4.59173 4.62858 4.67255 4.71191 4.72632 4.81878 4.88980 4.93406 4.97899 5.00233 5.07580 5.15176 5.16328 5.22008 5.33684 5.34705 5.44210 5.48668 5.52827 5.64355 5.90490 6.07900 6.18673 6.36264 6.78635 7.36206 8.90865 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.006529 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.313339 B = 4287.800991 C = 5700.004929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.994 5.994 4 C 0.226 3.774 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.248 1.248 13 S 2.791 3.209 14 O -0.988 6.988 15 O -1.020 7.020 16 N -0.994 5.994 17 C 0.125 3.875 18 C 0.048 3.952 19 N -0.552 5.552 20 C 0.052 3.948 21 C -0.155 4.155 22 C 0.058 3.942 23 C 0.156 3.844 24 H 0.066 0.934 25 C -0.176 4.176 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -1.442 13.593 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.833 5.833 4 C 0.101 3.899 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.173 4.173 8 N -0.574 5.574 9 Si 0.741 3.259 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.171 1.171 13 S 2.802 3.198 14 O -0.972 6.972 15 O -1.004 7.004 16 N -0.835 5.835 17 C -0.001 4.001 18 C -0.081 4.081 19 N -0.277 5.277 20 C -0.075 4.075 21 C -0.212 4.212 22 C -0.071 4.071 23 C 0.050 3.950 24 H 0.084 0.916 25 C -0.234 4.234 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.269 -1.230 13.664 13.777 hybrid contribution -0.366 0.752 -0.654 1.062 sum 0.903 -0.478 13.010 13.050 Atomic orbital electron populations 1.22185 0.95243 1.03485 1.01575 1.21471 0.94997 0.81383 1.03610 1.57556 1.79025 1.23844 1.22894 1.19243 0.96896 0.91135 0.82603 1.21516 1.02195 1.27214 1.05295 0.92868 1.25540 0.96355 0.97814 0.97564 1.70020 1.23760 1.45272 1.18319 0.86173 0.81269 0.80278 0.78164 1.19580 1.20733 1.17143 1.01521 0.72895 0.72142 0.73194 1.93629 1.83653 1.64776 1.55133 1.93478 1.80056 1.39082 1.87779 1.57947 1.24030 1.20335 1.81153 1.21444 0.95245 0.85197 0.98200 1.22586 0.94197 0.94312 0.97034 1.62030 1.12435 1.06366 1.46867 1.22158 0.93318 0.98731 0.93305 1.21936 1.01100 0.96004 1.02193 1.22449 0.95377 0.94514 0.94809 1.21130 0.92073 0.84750 0.97044 0.91619 1.22725 0.98850 0.98594 1.03211 0.88912 0.93426 0.92775 0.90506 0.88806 0.93950 0.95676 0.92579 0.92141 0.90073 0.87570 0.94484 0.94385 0.89762 0.92369 0.90403 0.92601 0.94288 0.87652 0.92184 0.88846 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 10.22 71.98 0.74 -3.97 16 2 C 0.11 3.66 5.89 86.38 0.51 4.17 16 3 N -0.99 -39.76 2.82 -519.87 -1.47 -41.23 16 4 C 0.23 10.40 4.51 85.63 0.39 10.78 16 5 C -0.52 -27.54 9.94 25.60 0.25 -27.29 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 7 C 0.03 1.45 5.47 84.65 0.46 1.92 16 8 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 9 Si 0.92 42.07 27.47 68.60 1.88 43.95 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 13 S 2.79 109.88 5.57 -56.49 -0.31 109.56 16 14 O -0.99 -36.92 12.11 -128.00 -1.55 -38.47 16 15 O -1.02 -45.87 15.59 -128.00 -2.00 -47.86 16 16 N -0.99 -36.14 3.39 -489.89 -1.66 -37.80 16 17 C 0.13 4.55 6.67 86.35 0.58 5.12 16 18 C 0.05 1.37 5.06 86.30 0.44 1.81 16 19 N -0.55 -14.76 4.78 -894.09 -4.28 -19.03 16 20 C 0.05 1.04 5.99 86.30 0.52 1.56 16 21 C -0.16 -2.81 9.17 71.98 0.66 -2.15 16 22 C 0.06 1.49 4.89 86.38 0.42 1.91 16 23 C 0.16 4.86 3.66 44.96 0.16 5.03 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 C -0.18 -4.90 7.57 71.99 0.54 -4.35 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.58 7.99 -2.39 -0.02 1.57 16 29 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 30 H 0.09 2.83 4.82 -2.39 -0.01 2.82 16 31 H 0.04 1.89 7.01 -2.39 -0.02 1.88 16 32 H 0.03 1.21 6.67 -2.39 -0.02 1.19 16 33 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 3.06 6.79 -2.39 -0.02 3.04 16 36 H 0.11 2.67 5.75 -2.39 -0.01 2.66 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 0.71 8.08 -2.39 -0.02 0.69 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.06 6.17 -2.39 -0.01 1.04 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 0.98 8.13 -2.39 -0.02 0.96 16 44 H 0.11 2.18 8.11 -2.39 -0.02 2.16 16 45 H 0.06 1.83 3.46 -2.39 -0.01 1.82 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.08 2.43 6.58 -2.39 -0.02 2.42 16 Total: -1.00 -65.25 362.82 -2.53 -67.77 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.89 Total: 23.16 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.67 Total: -5.45 kcal Atomic # 7 Polarization: -145.56 SS G_CDS: -7.10 Total: -152.67 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -3.55 Total: -86.33 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.95 kcal Atomic # 16 Polarization: 109.88 SS G_CDS: -0.31 Total: 109.56 kcal Total: -65.25 -2.53 -67.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352603976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.182 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds