Wall clock time and date at job start Fri Apr 10 2020 18:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00263 * 79.87147 * 3 2 1 5 5 C 1.50694 * 109.47177 * 275.00599 * 4 3 2 6 6 H 1.08005 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00021 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00440 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47308 * 89.99992 * 9 7 5 11 11 H 1.48505 * 109.46989 * 210.00216 * 9 7 5 12 12 H 1.48497 * 109.47321 * 329.99719 * 9 7 5 13 13 S 1.65600 * 119.99811 * 259.87813 * 3 2 1 14 14 O 1.42097 * 106.40476 * 7.65475 * 13 3 2 15 15 O 1.42102 * 106.40446 * 140.57692 * 13 3 2 16 16 N 1.65599 * 107.21922 * 254.11575 * 13 3 2 17 17 C 1.47080 * 120.88144 * 261.81181 * 16 13 3 18 18 C 1.52781 * 108.76427 * 231.11583 * 17 16 13 19 19 N 1.46897 * 109.42894 * 306.42634 * 18 17 16 20 20 C 1.46897 * 111.00453 * 187.11245 * 19 18 17 21 21 C 1.53004 * 109.47153 * 65.69548 * 20 19 18 22 22 C 1.46902 * 111.26599 * 62.96195 * 19 18 17 23 23 C 1.47079 * 120.88104 * 82.08352 * 16 13 3 24 24 H 1.09002 * 109.62998 * 248.72777 * 23 16 13 25 25 C 1.53001 * 109.63026 * 9.11012 * 23 16 13 26 26 H 1.09003 * 109.46778 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47106 * 299.99971 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00244 * 1 2 3 29 29 H 1.09002 * 109.47415 * 239.99657 * 2 1 3 30 30 H 1.08999 * 109.46922 * 119.99756 * 2 1 3 31 31 H 1.08998 * 109.46431 * 35.00300 * 4 3 2 32 32 H 1.09001 * 109.47059 * 154.99885 * 4 3 2 33 33 H 0.97004 * 119.99806 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.62753 * 350.88849 * 17 16 13 35 35 H 1.09002 * 109.63165 * 111.46972 * 17 16 13 36 36 H 1.09000 * 109.56831 * 186.36573 * 18 17 16 37 37 H 1.09007 * 109.35906 * 66.35590 * 18 17 16 38 38 H 1.08999 * 109.47384 * 185.69897 * 20 19 18 39 39 H 1.09006 * 109.46862 * 305.69571 * 20 19 18 40 40 H 1.09005 * 109.46862 * 300.00377 * 21 20 19 41 41 H 1.08997 * 109.46659 * 60.00174 * 21 20 19 42 42 H 1.08997 * 109.46792 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.48774 * 176.94316 * 22 19 18 44 44 H 1.08990 * 109.51799 * 56.87452 * 22 19 18 45 45 H 1.09007 * 109.46843 * 66.85129 * 25 23 16 46 46 H 1.08997 * 109.47367 * 186.84997 * 25 23 16 47 47 H 1.08998 * 109.46977 * 306.85655 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0522 2.1462 1.2489 5 6 0.7042 2.7754 1.4893 6 1 -0.0976 2.6212 0.7823 7 6 0.4945 3.5487 2.6113 8 7 -0.6818 4.0983 2.8209 9 14 1.8814 3.8160 3.8339 10 1 2.6542 5.0244 3.4495 11 1 1.3137 4.0031 5.1933 12 1 2.7788 2.6328 3.8309 13 16 2.5320 2.0778 -1.4118 14 8 2.2098 1.1635 -2.4508 15 8 2.0698 3.4213 -1.3878 16 7 4.1852 2.1509 -1.3493 17 6 4.8715 3.3896 -0.9520 18 6 5.9298 3.7235 -2.0021 19 7 6.8074 2.5619 -2.1981 20 6 7.9378 2.8978 -3.0739 21 6 8.8328 3.9265 -2.3798 22 6 6.0593 1.4113 -2.7220 23 6 5.0062 0.9807 -1.6954 24 1 5.4976 0.6004 -0.7998 25 6 4.1182 -0.1105 -2.2968 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2949 1.4798 2.0766 32 1 2.8098 2.9266 1.1766 33 1 -0.8290 4.6427 3.6102 34 1 4.1500 4.2040 -0.8893 35 1 5.3526 3.2475 0.0157 36 1 6.5223 4.5743 -1.6656 37 1 5.4392 3.9716 -2.9434 38 1 8.5148 1.9972 -3.2841 39 1 7.5621 3.3148 -4.0084 40 1 8.2557 4.8271 -2.1697 41 1 9.2085 3.5095 -1.4455 42 1 9.6713 4.1760 -3.0299 43 1 6.7457 0.5851 -2.9073 44 1 5.5666 1.6907 -3.6531 45 1 3.7297 0.2260 -3.2581 46 1 4.7043 -1.0183 -2.4395 47 1 3.2879 -0.3165 -1.6214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352603977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:34 Heat of formation + Delta-G solvation = -45.732502 kcal Electronic energy + Delta-G solvation = -27708.630494 eV Core-core repulsion = 24054.319794 eV Total energy + Delta-G solvation = -3654.310701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30923 -37.07005 -36.17188 -35.49218 -35.15068 -32.51098 -32.32900 -30.73480 -30.05521 -27.67668 -27.26419 -25.28324 -23.34171 -22.54619 -21.65969 -21.51074 -20.58241 -18.30369 -17.23694 -17.05098 -16.60048 -16.15042 -15.60265 -15.34239 -15.02847 -14.75242 -14.54161 -14.23666 -13.71573 -13.51969 -13.22961 -13.11745 -12.76304 -12.70916 -12.47236 -12.44288 -12.14791 -12.03053 -11.77774 -11.65421 -11.52491 -11.46911 -11.26426 -11.15699 -11.03422 -10.99542 -10.97564 -10.78282 -10.44761 -10.21884 -10.11087 -10.00640 -9.40631 -9.01311 -8.57413 -8.41046 -8.10531 -6.05908 -4.04148 1.12637 3.25993 3.31574 3.32569 3.37407 3.71703 4.00511 4.38980 4.64441 4.68582 4.80935 4.96593 4.97848 5.12520 5.21434 5.23839 5.26453 5.29502 5.34616 5.42155 5.52967 5.56994 5.61874 5.66877 5.71174 5.78336 5.84548 5.89229 5.98897 6.02244 6.12177 6.17700 6.21335 6.38146 6.53392 6.62096 6.68905 6.78464 6.91034 6.93586 7.02741 7.17617 7.45054 7.60111 8.52152 9.01817 9.53197 11.07393 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.005269 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.982563 B = 5312.879689 C = 6483.805344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.988 5.988 4 C 0.231 3.769 5 C -0.525 4.525 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.778 3.222 14 O -0.991 6.991 15 O -0.963 6.963 16 N -1.009 6.009 17 C 0.120 3.880 18 C 0.042 3.958 19 N -0.538 5.538 20 C 0.051 3.949 21 C -0.150 4.150 22 C 0.051 3.949 23 C 0.159 3.841 24 H 0.079 0.921 25 C -0.182 4.182 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.965 -6.606 -9.442 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.829 5.829 4 C 0.107 3.893 5 C -0.564 4.564 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.975 6.975 15 O -0.946 6.946 16 N -0.849 5.849 17 C -0.006 4.006 18 C -0.087 4.087 19 N -0.263 5.263 20 C -0.077 4.077 21 C -0.207 4.207 22 C -0.079 4.079 23 C 0.053 3.947 24 H 0.097 0.903 25 C -0.241 4.241 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.491 -6.301 -9.551 20.071 hybrid contribution 0.556 0.427 0.346 0.782 sum 17.047 -5.873 -9.204 20.244 Atomic orbital electron populations 1.22236 0.95853 1.00735 1.04094 1.21204 0.95272 0.82043 1.01577 1.57567 1.77046 1.22568 1.25735 1.19374 0.98001 0.90381 0.81545 1.21434 0.96688 1.30001 1.08295 0.89915 1.24873 0.95369 0.95134 0.97612 1.69895 1.22132 1.33285 1.28041 0.86995 0.83023 0.79302 0.81248 1.19925 1.21017 1.18968 1.02156 0.72254 0.73344 0.73410 1.93610 1.83848 1.64819 1.55204 1.93614 1.77962 1.36408 1.86663 1.58512 1.25119 1.18074 1.83164 1.21445 0.95102 0.86324 0.97704 1.22425 0.94300 0.93261 0.98708 1.61913 1.09938 1.06091 1.48356 1.22067 0.92424 0.99286 0.93913 1.21814 0.98956 0.98759 1.01197 1.22486 0.95556 0.93657 0.96184 1.20990 0.91310 0.84979 0.97451 0.90328 1.22802 0.99154 0.97507 1.04601 0.93080 0.89627 0.93263 0.90509 0.91421 0.94956 0.96186 0.92614 0.88036 0.90822 0.89306 0.94422 0.90836 0.95050 0.92503 0.91754 0.92432 0.89912 0.94255 0.88979 0.91752 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.62 37.16 0.36 -2.73 16 2 C 0.12 2.14 5.89 -4.04 -0.02 2.12 16 3 N -0.99 -19.86 2.89 -115.67 -0.33 -20.20 16 4 C 0.23 5.31 4.24 -5.20 -0.02 5.29 16 5 C -0.53 -14.60 8.69 -34.44 -0.30 -14.90 16 6 H 0.08 2.53 7.17 -52.48 -0.38 2.16 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 9 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 13 S 2.78 54.55 5.49 -107.50 -0.59 53.96 16 14 O -0.99 -19.20 12.10 -57.17 -0.69 -19.89 16 15 O -0.96 -22.99 16.14 -57.17 -0.92 -23.91 16 16 N -1.01 -15.85 3.39 -106.46 -0.36 -16.21 16 17 C 0.12 1.75 6.66 -3.84 -0.03 1.73 16 18 C 0.04 0.51 5.44 -3.94 -0.02 0.49 16 19 N -0.54 -6.02 4.63 -234.61 -1.09 -7.11 16 20 C 0.05 0.46 5.68 -3.82 -0.02 0.43 16 21 C -0.15 -1.18 9.84 37.16 0.37 -0.82 16 22 C 0.05 0.57 4.91 -3.70 -0.02 0.55 16 23 C 0.16 2.05 3.68 -67.49 -0.25 1.80 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.18 -2.31 7.56 37.16 0.28 -2.03 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.80 6.54 -51.93 -0.34 1.46 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.17 4.82 -51.93 -0.25 0.92 16 30 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.03 0.72 7.11 -51.93 -0.37 0.35 16 32 H 0.02 0.46 7.42 -51.93 -0.39 0.07 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.63 6.78 -51.93 -0.35 1.28 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.92 6.16 -51.93 -0.32 0.60 16 37 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.58 7.97 -51.93 -0.41 0.17 16 39 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 40 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.75 7.99 -51.93 -0.41 0.34 16 44 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 45 H 0.09 1.31 6.57 -51.92 -0.34 0.97 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.03 3.46 -51.93 -0.18 0.85 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -32.98 360.68 -10.11 -43.08 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.89 Total: 1.31 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 0.23 Total: -6.10 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -1.01 Total: -69.96 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.61 Total: -43.80 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 54.55 SS G_CDS: -0.59 Total: 53.96 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.98 -10.11 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352603977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.648 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds