Wall clock time and date at job start Fri Apr 10 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00263 * 79.87147 * 3 2 1 5 5 C 1.50694 * 109.47177 * 275.00599 * 4 3 2 6 6 H 1.08005 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00021 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00440 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47308 * 89.99992 * 9 7 5 11 11 H 1.48505 * 109.46989 * 210.00216 * 9 7 5 12 12 H 1.48497 * 109.47321 * 329.99719 * 9 7 5 13 13 S 1.65600 * 119.99811 * 259.87813 * 3 2 1 14 14 O 1.42097 * 106.40476 * 7.65475 * 13 3 2 15 15 O 1.42102 * 106.40446 * 140.57692 * 13 3 2 16 16 N 1.65599 * 107.21922 * 254.11575 * 13 3 2 17 17 C 1.47080 * 120.88144 * 261.81181 * 16 13 3 18 18 C 1.52781 * 108.76427 * 231.11583 * 17 16 13 19 19 N 1.46897 * 109.42894 * 306.42634 * 18 17 16 20 20 C 1.46897 * 111.00453 * 187.11245 * 19 18 17 21 21 C 1.53004 * 109.47153 * 65.69548 * 20 19 18 22 22 C 1.46902 * 111.26599 * 62.96195 * 19 18 17 23 23 C 1.47079 * 120.88104 * 82.08352 * 16 13 3 24 24 H 1.09002 * 109.62998 * 248.72777 * 23 16 13 25 25 C 1.53001 * 109.63026 * 9.11012 * 23 16 13 26 26 H 1.09003 * 109.46778 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47106 * 299.99971 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00244 * 1 2 3 29 29 H 1.09002 * 109.47415 * 239.99657 * 2 1 3 30 30 H 1.08999 * 109.46922 * 119.99756 * 2 1 3 31 31 H 1.08998 * 109.46431 * 35.00300 * 4 3 2 32 32 H 1.09001 * 109.47059 * 154.99885 * 4 3 2 33 33 H 0.97004 * 119.99806 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.62753 * 350.88849 * 17 16 13 35 35 H 1.09002 * 109.63165 * 111.46972 * 17 16 13 36 36 H 1.09000 * 109.56831 * 186.36573 * 18 17 16 37 37 H 1.09007 * 109.35906 * 66.35590 * 18 17 16 38 38 H 1.08999 * 109.47384 * 185.69897 * 20 19 18 39 39 H 1.09006 * 109.46862 * 305.69571 * 20 19 18 40 40 H 1.09005 * 109.46862 * 300.00377 * 21 20 19 41 41 H 1.08997 * 109.46659 * 60.00174 * 21 20 19 42 42 H 1.08997 * 109.46792 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.48774 * 176.94316 * 22 19 18 44 44 H 1.08990 * 109.51799 * 56.87452 * 22 19 18 45 45 H 1.09007 * 109.46843 * 66.85129 * 25 23 16 46 46 H 1.08997 * 109.47367 * 186.84997 * 25 23 16 47 47 H 1.08998 * 109.46977 * 306.85655 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0522 2.1462 1.2489 5 6 0.7042 2.7754 1.4893 6 1 -0.0976 2.6212 0.7823 7 6 0.4945 3.5487 2.6113 8 7 -0.6818 4.0983 2.8209 9 14 1.8814 3.8160 3.8339 10 1 2.6542 5.0244 3.4495 11 1 1.3137 4.0031 5.1933 12 1 2.7788 2.6328 3.8309 13 16 2.5320 2.0778 -1.4118 14 8 2.2098 1.1635 -2.4508 15 8 2.0698 3.4213 -1.3878 16 7 4.1852 2.1509 -1.3493 17 6 4.8715 3.3896 -0.9520 18 6 5.9298 3.7235 -2.0021 19 7 6.8074 2.5619 -2.1981 20 6 7.9378 2.8978 -3.0739 21 6 8.8328 3.9265 -2.3798 22 6 6.0593 1.4113 -2.7220 23 6 5.0062 0.9807 -1.6954 24 1 5.4976 0.6004 -0.7998 25 6 4.1182 -0.1105 -2.2968 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2949 1.4798 2.0766 32 1 2.8098 2.9266 1.1766 33 1 -0.8290 4.6427 3.6102 34 1 4.1500 4.2040 -0.8893 35 1 5.3526 3.2475 0.0157 36 1 6.5223 4.5743 -1.6656 37 1 5.4392 3.9716 -2.9434 38 1 8.5148 1.9972 -3.2841 39 1 7.5621 3.3148 -4.0084 40 1 8.2557 4.8271 -2.1697 41 1 9.2085 3.5095 -1.4455 42 1 9.6713 4.1760 -3.0299 43 1 6.7457 0.5851 -2.9073 44 1 5.5666 1.6907 -3.6531 45 1 3.7297 0.2260 -3.2581 46 1 4.7043 -1.0183 -2.4395 47 1 3.2879 -0.3165 -1.6214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352603977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:33 Heat of formation + Delta-G solvation = -71.030148 kcal Electronic energy + Delta-G solvation = -27709.727483 eV Core-core repulsion = 24054.319794 eV Total energy + Delta-G solvation = -3655.407689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27577 -38.61237 -37.80373 -36.89426 -36.38678 -34.58351 -33.40572 -31.74292 -31.48249 -29.13979 -28.69853 -26.20114 -24.36406 -24.28699 -23.29476 -22.43314 -21.55726 -19.74921 -19.05381 -18.63243 -18.13650 -17.47950 -16.72648 -16.40867 -16.20964 -16.03770 -15.64788 -15.55987 -15.28845 -14.84003 -14.58581 -14.46804 -14.27973 -14.16189 -13.95088 -13.49475 -13.38794 -13.18535 -13.12284 -12.96177 -12.86415 -12.77879 -12.73952 -12.56609 -12.31927 -12.23727 -12.16553 -12.02444 -11.94484 -11.64754 -11.60795 -11.40795 -11.19879 -10.73190 -10.15732 -9.78432 -9.29591 -8.23411 -6.27451 -0.38829 1.38231 1.40645 1.49612 1.96395 2.37911 2.52088 2.86555 3.09136 3.37498 3.56533 3.84110 3.96162 4.02880 4.13159 4.21661 4.30364 4.36824 4.41004 4.43256 4.46357 4.60631 4.63808 4.66301 4.71775 4.73865 4.79384 4.85917 4.90623 4.93002 4.98211 5.04715 5.10243 5.14705 5.17035 5.37458 5.40195 5.51001 5.52979 5.53418 5.65841 5.89655 6.03135 6.13405 6.37607 6.76719 7.34010 8.93920 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.005269 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.982563 B = 5312.879689 C = 6483.805344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.994 5.994 4 C 0.238 3.762 5 C -0.529 4.529 6 H 0.034 0.966 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.230 1.230 13 S 2.784 3.216 14 O -0.994 6.994 15 O -1.017 7.017 16 N -1.003 6.003 17 C 0.114 3.886 18 C 0.047 3.953 19 N -0.541 5.541 20 C 0.050 3.950 21 C -0.147 4.147 22 C 0.052 3.948 23 C 0.154 3.846 24 H 0.096 0.904 25 C -0.182 4.182 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.026 0.974 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.031 -8.494 -9.124 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.834 5.834 4 C 0.113 3.887 5 C -0.568 4.568 6 H 0.052 0.948 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.760 3.240 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.152 1.152 13 S 2.796 3.204 14 O -0.978 6.978 15 O -1.000 7.000 16 N -0.845 5.845 17 C -0.012 4.012 18 C -0.082 4.082 19 N -0.266 5.266 20 C -0.078 4.078 21 C -0.204 4.204 22 C -0.078 4.078 23 C 0.049 3.951 24 H 0.114 0.886 25 C -0.241 4.241 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.131 0.869 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.119 0.881 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.561 -8.225 -9.262 24.004 hybrid contribution -0.742 0.959 0.112 1.218 sum 19.819 -7.266 -9.150 23.007 Atomic orbital electron populations 1.22204 0.97255 1.02190 1.01109 1.21498 0.94144 0.80974 1.04089 1.57537 1.77814 1.23442 1.24625 1.19165 0.95100 0.91009 0.83443 1.21708 0.97840 1.30111 1.07184 0.94810 1.25891 0.98319 0.94778 1.00111 1.70080 1.25035 1.34852 1.29165 0.85873 0.79695 0.80611 0.77845 1.19308 1.20848 1.15240 1.01733 0.73221 0.72085 0.73355 1.93615 1.84638 1.64348 1.55194 1.93543 1.79784 1.39378 1.87312 1.58223 1.23590 1.19615 1.83065 1.21580 0.95092 0.85172 0.99360 1.22360 0.94015 0.94482 0.97363 1.61955 1.09975 1.05528 1.49108 1.22166 0.91762 1.00353 0.93481 1.21792 0.99145 0.98152 1.01311 1.22523 0.95622 0.94673 0.94943 1.21310 0.91249 0.83839 0.98724 0.88643 1.22764 0.99269 0.98983 1.03052 0.89378 0.93300 0.95515 0.88067 0.88722 0.92840 0.95473 0.92597 0.90360 0.89487 0.87456 0.95596 0.89244 0.95259 0.93009 0.91991 0.90946 0.86946 0.95366 0.90930 0.88118 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.20 9.62 71.98 0.69 -5.51 16 2 C 0.12 3.87 5.89 86.38 0.51 4.38 16 3 N -0.99 -39.60 2.89 -519.86 -1.50 -41.10 16 4 C 0.24 10.79 4.24 85.63 0.36 11.15 16 5 C -0.53 -30.43 8.69 25.60 0.22 -30.21 16 6 H 0.03 2.21 7.17 -2.91 -0.02 2.19 16 7 C 0.01 0.36 5.47 84.65 0.46 0.82 16 8 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 9 Si 0.94 42.38 27.47 68.60 1.88 44.27 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 13 S 2.78 110.32 5.49 -56.49 -0.31 110.01 16 14 O -0.99 -38.59 12.10 -128.00 -1.55 -40.13 16 15 O -1.02 -50.74 16.14 -128.00 -2.07 -52.81 16 16 N -1.00 -30.20 3.39 -490.72 -1.67 -31.87 16 17 C 0.11 3.19 6.66 86.20 0.57 3.76 16 18 C 0.05 1.07 5.44 86.23 0.47 1.54 16 19 N -0.54 -10.47 4.63 -896.17 -4.15 -14.62 16 20 C 0.05 0.73 5.68 86.31 0.49 1.22 16 21 C -0.15 -1.87 9.84 71.98 0.71 -1.16 16 22 C 0.05 1.00 4.91 86.38 0.42 1.42 16 23 C 0.15 3.51 3.68 44.96 0.17 3.67 16 24 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 25 C -0.18 -4.12 7.56 71.98 0.54 -3.57 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 2.14 6.54 -2.39 -0.02 2.12 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 2.86 4.82 -2.39 -0.01 2.85 16 30 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 31 H 0.05 2.22 7.11 -2.39 -0.02 2.20 16 32 H 0.03 1.21 7.42 -2.39 -0.02 1.19 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.08 2.56 6.78 -2.39 -0.02 2.55 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.01 6.16 -2.39 -0.01 1.99 16 37 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.09 1.06 7.97 -2.39 -0.02 1.04 16 39 H 0.03 0.45 8.12 -2.38 -0.02 0.43 16 40 H 0.05 0.71 6.40 -2.38 -0.02 0.69 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.11 1.52 7.99 -2.39 -0.02 1.50 16 44 H 0.03 0.61 8.13 -2.39 -0.02 0.59 16 45 H 0.07 1.94 6.57 -2.38 -0.02 1.93 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.06 1.55 3.46 -2.39 -0.01 1.54 16 Total: -1.00 -76.03 360.68 -2.54 -78.57 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.89 Total: 20.18 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.63 Total: -12.48 kcal Atomic # 7 Polarization: -140.59 SS G_CDS: -7.02 Total: -147.60 kcal Atomic # 8 Polarization: -89.33 SS G_CDS: -3.61 Total: -92.94 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 110.32 SS G_CDS: -0.31 Total: 110.01 kcal Total: -76.03 -2.54 -78.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352603977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.541 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds