Wall clock time and date at job start Fri Apr 10 2020 18:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34888 * 125.64582 * 2 1 4 4 C 1.35873 * 109.08297 * 180.02562 * 3 2 1 5 5 C 1.39391 * 107.91994 * 359.76056 * 4 3 2 6 6 C 1.37843 * 125.65051 * 180.02562 * 2 1 3 7 7 C 1.41528 * 126.31951 * 359.97263 * 6 2 1 8 8 O 1.21609 * 119.99630 * 0.02562 * 7 6 2 9 9 C 1.49092 * 120.00563 * 180.02562 * 7 6 2 10 10 O 1.21402 * 119.99808 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00495 * 179.97438 * 9 7 6 12 12 C 1.46502 * 120.00291 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47024 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.50203 * 55.00173 * 13 12 11 15 15 C 1.53045 * 109.49739 * 175.06381 * 13 12 11 16 16 C 1.53102 * 109.50285 * 181.31400 * 15 13 12 17 17 C 1.53193 * 109.33443 * 298.65740 * 16 15 13 18 18 N 1.46923 * 108.77314 * 54.63338 * 17 16 15 19 19 C 1.36936 * 120.62873 * 126.41573 * 18 17 16 20 20 H 1.08002 * 119.99953 * 332.57561 * 19 18 17 21 21 C 1.38808 * 120.00209 * 152.58167 * 19 18 17 22 22 N 1.31616 * 120.00374 * 159.32687 * 21 19 18 23 23 Si 1.86808 * 119.99960 * 339.32478 * 21 19 18 24 24 H 1.48497 * 109.46971 * 92.97078 * 23 21 19 25 25 H 1.48500 * 109.47031 * 212.97597 * 23 21 19 26 26 H 1.48504 * 109.46985 * 332.97426 * 23 21 19 27 27 C 1.46930 * 118.74340 * 306.39524 * 18 17 16 28 28 H 1.09000 * 109.46757 * 269.98874 * 1 2 3 29 29 H 1.08992 * 109.47478 * 29.99622 * 1 2 3 30 30 H 1.09004 * 109.46634 * 149.99849 * 1 2 3 31 31 H 1.07997 * 125.45477 * 0.04012 * 3 2 1 32 32 H 1.08001 * 126.04200 * 180.02562 * 4 3 2 33 33 H 1.07991 * 126.53590 * 180.26379 * 5 4 3 34 34 H 0.97006 * 119.99668 * 0.02562 * 11 9 7 35 35 H 1.08993 * 109.47301 * 60.00132 * 12 11 9 36 36 H 1.09002 * 109.47295 * 299.99877 * 12 11 9 37 37 H 1.09001 * 109.46000 * 301.37108 * 15 13 12 38 38 H 1.09000 * 109.45753 * 61.32798 * 15 13 12 39 39 H 1.09005 * 109.48755 * 178.69754 * 16 15 13 40 40 H 1.08997 * 109.51602 * 58.63625 * 16 15 13 41 41 H 1.09000 * 109.58251 * 294.84982 * 17 16 15 42 42 H 1.08998 * 109.70414 * 174.49625 * 17 16 15 43 43 H 0.97001 * 120.00515 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.58244 * 293.82431 * 27 18 17 45 45 H 1.08993 * 109.70281 * 173.46490 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5535 0.7088 -0.0006 5 6 3.5865 -0.6847 0.0046 6 6 2.2684 -1.1201 -0.0005 7 6 1.8304 -2.4659 -0.0006 8 8 0.6407 -2.7180 -0.0006 9 6 2.8273 -3.5745 -0.0006 10 8 4.0149 -3.3228 0.0000 11 7 2.4101 -4.8560 -0.0001 12 6 3.3898 -5.9453 0.0005 13 6 2.6583 -7.2890 0.0003 14 1 1.9671 -7.3270 -0.8417 15 6 3.6765 -8.4249 -0.1233 16 6 2.9424 -9.7681 -0.1564 17 6 2.1658 -9.9541 1.1509 18 7 1.2889 -8.7921 1.3494 19 6 -0.0525 -8.9596 1.5679 20 1 -0.5586 -9.8303 1.1778 21 6 -0.7619 -8.0104 2.2907 22 7 -2.0701 -7.9329 2.1690 23 14 0.1403 -6.8428 3.4364 24 1 0.4679 -5.5903 2.7090 25 1 -0.7239 -6.5268 4.6020 26 1 1.3941 -7.4832 3.9089 27 6 1.8785 -7.4469 1.3094 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9013 2.1179 0.0006 32 1 4.4115 1.3647 -0.0003 33 1 4.4691 -1.3068 0.0095 34 1 1.4612 -5.0571 -0.0001 35 1 4.0147 -5.8715 0.8905 36 1 4.0149 -5.8722 -0.8895 37 1 4.2496 -8.3005 -1.0421 38 1 4.3521 -8.4015 0.7318 39 1 3.6662 -10.5754 -0.2677 40 1 2.2487 -9.7832 -0.9970 41 1 2.8651 -10.0305 1.9835 42 1 1.5638 -10.8610 1.0949 43 1 -2.5659 -7.2698 2.6744 44 1 2.5544 -7.3190 2.1549 45 1 1.0882 -6.6977 1.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354084992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:39 Heat of formation + Delta-G solvation = 8.584383 kcal Electronic energy + Delta-G solvation = -27221.469023 eV Core-core repulsion = 23434.069728 eV Total energy + Delta-G solvation = -3787.399295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78258 -40.01305 -38.48419 -37.92056 -34.98655 -33.14735 -33.09746 -31.17318 -30.55926 -30.18798 -26.76319 -26.62586 -25.31848 -24.60165 -22.56652 -21.56819 -20.92466 -20.65286 -19.60468 -19.20756 -17.68195 -17.12868 -16.83576 -16.11291 -15.99112 -15.58639 -15.15807 -14.84217 -14.42373 -14.24847 -14.02930 -13.82429 -13.62339 -13.51824 -13.30126 -13.22864 -12.87042 -12.55133 -12.45754 -12.40081 -12.27811 -12.09631 -11.64120 -11.48364 -11.31195 -10.80219 -10.62414 -10.53907 -10.15107 -9.94897 -9.72128 -9.51376 -9.41949 -9.06680 -8.95021 -8.63143 -8.47346 -6.99746 -5.97456 -3.33134 0.50038 2.05248 2.36242 2.66946 3.07324 3.29791 3.40083 3.47392 3.49258 4.30211 4.50081 4.56470 4.69927 4.78776 4.87816 4.97812 5.12944 5.17985 5.21122 5.26689 5.27999 5.41084 5.41731 5.57822 5.72298 5.79122 5.95732 5.98560 5.99268 6.07654 6.08996 6.27234 6.30847 6.40470 6.48365 6.53048 6.56694 6.66955 6.67371 6.75081 6.94500 6.94776 7.03661 7.48902 7.93759 8.02015 8.30910 8.91874 9.69750 10.07722 11.18409 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.003835 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.925111 B = 7299.758824 C = 8604.966574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.409 5.409 3 C 0.037 3.963 4 C -0.226 4.226 5 C -0.078 4.078 6 C -0.102 4.102 7 C 0.411 3.589 8 O -0.445 6.445 9 C 0.493 3.507 10 O -0.516 6.516 11 N -0.696 5.696 12 C 0.123 3.877 13 C -0.121 4.121 14 H 0.082 0.918 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.146 3.854 18 N -0.605 5.605 19 C -0.261 4.261 20 H 0.086 0.914 21 C 0.026 3.974 22 N -0.906 5.906 23 Si 0.877 3.123 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.271 1.271 27 C 0.132 3.868 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.022 0.978 42 H 0.063 0.937 43 H 0.263 0.737 44 H 0.026 0.974 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 14.623 -6.427 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.081 5.081 3 C -0.102 4.102 4 C -0.250 4.250 5 C -0.104 4.104 6 C -0.211 4.211 7 C 0.289 3.711 8 O -0.322 6.322 9 C 0.275 3.725 10 O -0.393 6.393 11 N -0.349 5.349 12 C -0.001 4.001 13 C -0.142 4.142 14 H 0.100 0.900 15 C -0.138 4.138 16 C -0.174 4.174 17 C 0.020 3.980 18 N -0.328 5.328 19 C -0.389 4.389 20 H 0.104 0.896 21 C -0.173 4.173 22 N -0.549 5.549 23 Si 0.707 3.293 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.196 1.196 27 C 0.006 3.994 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.188 0.812 32 H 0.163 0.837 33 H 0.186 0.814 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.212 14.622 -6.354 18.933 hybrid contribution -0.141 0.803 0.781 1.129 sum 10.071 15.424 -5.573 19.246 Atomic orbital electron populations 1.22372 0.75913 1.05437 1.04334 1.43919 1.06957 1.05238 1.52007 1.22182 0.91061 0.91677 1.05260 1.21049 0.95937 0.95556 1.12451 1.22305 0.95632 0.95033 0.97446 1.19287 0.91338 0.87744 1.22688 1.20136 0.88791 0.88297 0.73914 1.90667 1.18366 1.86788 1.36352 1.20223 0.89317 0.84303 0.78682 1.90657 1.16618 1.83641 1.48359 1.46034 1.12323 1.05073 1.71462 1.21616 0.90962 0.85108 1.02389 1.22010 0.98055 0.92137 1.01970 0.89981 1.21350 0.96860 0.94607 1.00986 1.21999 0.98984 0.95899 1.00479 1.20960 0.92602 0.90895 0.93515 1.44330 1.05410 0.99301 1.83784 1.18930 0.81612 1.09632 1.28757 0.89598 1.25260 0.95062 0.98379 0.98629 1.69826 1.06173 1.36242 1.42618 0.87047 0.79559 0.80869 0.81804 1.21500 1.23103 1.19622 1.21384 0.95925 0.88807 0.93257 0.90194 0.89600 0.87848 0.81181 0.83664 0.81382 0.74801 0.91015 0.90952 0.92654 0.92247 0.92527 0.91913 0.96014 0.91890 0.92736 0.95606 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.53 59.85 0.63 1.19 16 2 N -0.41 -4.72 3.15 -121.68 -0.38 -5.11 16 3 C 0.04 0.34 11.35 -17.06 -0.19 0.15 16 4 C -0.23 -2.31 10.81 -40.00 -0.43 -2.74 16 5 C -0.08 -1.01 9.95 -38.94 -0.39 -1.39 16 6 C -0.10 -1.44 6.72 -83.70 -0.56 -2.00 16 7 C 0.41 6.47 7.00 -33.82 -0.24 6.23 16 8 O -0.45 -7.61 14.64 5.27 0.08 -7.54 16 9 C 0.49 7.98 7.85 -11.76 -0.09 7.89 16 10 O -0.52 -8.64 14.04 5.45 0.08 -8.56 16 11 N -0.70 -11.30 5.32 -60.85 -0.32 -11.63 16 12 C 0.12 1.85 5.07 -4.04 -0.02 1.83 16 13 C -0.12 -2.01 2.37 -90.50 -0.21 -2.23 16 14 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.10 -1.45 5.17 -26.66 -0.14 -1.59 16 16 C -0.13 -2.09 6.08 -26.58 -0.16 -2.25 16 17 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 18 N -0.61 -14.11 2.77 -172.32 -0.48 -14.59 16 19 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 22 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 23 Si 0.88 22.57 24.35 -169.99 -4.14 18.43 16 24 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 26 H -0.27 -6.90 6.64 56.52 0.38 -6.52 16 27 C 0.13 2.80 3.29 -3.71 -0.01 2.78 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 1.13 6.26 -51.93 -0.33 0.81 16 31 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.17 2.23 6.07 -52.49 -0.32 1.91 16 34 H 0.42 7.11 7.16 -40.82 -0.29 6.82 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.03 0.56 7.08 -51.93 -0.37 0.19 16 45 H 0.07 1.64 3.70 -51.93 -0.19 1.44 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.02 358.67 -7.67 -40.69 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.59 Total: 5.88 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.09 Total: 3.92 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.41 Total: -58.23 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.15 Total: -16.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.02 -7.67 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354084992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.275 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds