Wall clock time and date at job start Fri Apr 10 2020 18:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34888 * 125.64582 * 2 1 4 4 C 1.35873 * 109.08297 * 180.02562 * 3 2 1 5 5 C 1.39391 * 107.91994 * 359.76056 * 4 3 2 6 6 C 1.37843 * 125.65051 * 180.02562 * 2 1 3 7 7 C 1.41528 * 126.31951 * 359.97263 * 6 2 1 8 8 O 1.21609 * 119.99630 * 0.02562 * 7 6 2 9 9 C 1.49092 * 120.00563 * 180.02562 * 7 6 2 10 10 O 1.21402 * 119.99808 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00495 * 179.97438 * 9 7 6 12 12 C 1.46502 * 120.00291 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47024 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.50203 * 55.00173 * 13 12 11 15 15 C 1.53045 * 109.49739 * 175.06381 * 13 12 11 16 16 C 1.53102 * 109.50285 * 181.31400 * 15 13 12 17 17 C 1.53193 * 109.33443 * 298.65740 * 16 15 13 18 18 N 1.46923 * 108.77314 * 54.63338 * 17 16 15 19 19 C 1.36936 * 120.62873 * 126.41573 * 18 17 16 20 20 H 1.08002 * 119.99953 * 332.57561 * 19 18 17 21 21 C 1.38808 * 120.00209 * 152.58167 * 19 18 17 22 22 N 1.31616 * 120.00374 * 159.32687 * 21 19 18 23 23 Si 1.86808 * 119.99960 * 339.32478 * 21 19 18 24 24 H 1.48497 * 109.46971 * 92.97078 * 23 21 19 25 25 H 1.48500 * 109.47031 * 212.97597 * 23 21 19 26 26 H 1.48504 * 109.46985 * 332.97426 * 23 21 19 27 27 C 1.46930 * 118.74340 * 306.39524 * 18 17 16 28 28 H 1.09000 * 109.46757 * 269.98874 * 1 2 3 29 29 H 1.08992 * 109.47478 * 29.99622 * 1 2 3 30 30 H 1.09004 * 109.46634 * 149.99849 * 1 2 3 31 31 H 1.07997 * 125.45477 * 0.04012 * 3 2 1 32 32 H 1.08001 * 126.04200 * 180.02562 * 4 3 2 33 33 H 1.07991 * 126.53590 * 180.26379 * 5 4 3 34 34 H 0.97006 * 119.99668 * 0.02562 * 11 9 7 35 35 H 1.08993 * 109.47301 * 60.00132 * 12 11 9 36 36 H 1.09002 * 109.47295 * 299.99877 * 12 11 9 37 37 H 1.09001 * 109.46000 * 301.37108 * 15 13 12 38 38 H 1.09000 * 109.45753 * 61.32798 * 15 13 12 39 39 H 1.09005 * 109.48755 * 178.69754 * 16 15 13 40 40 H 1.08997 * 109.51602 * 58.63625 * 16 15 13 41 41 H 1.09000 * 109.58251 * 294.84982 * 17 16 15 42 42 H 1.08998 * 109.70414 * 174.49625 * 17 16 15 43 43 H 0.97001 * 120.00515 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.58244 * 293.82431 * 27 18 17 45 45 H 1.08993 * 109.70281 * 173.46490 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5535 0.7088 -0.0006 5 6 3.5865 -0.6847 0.0046 6 6 2.2684 -1.1201 -0.0005 7 6 1.8304 -2.4659 -0.0006 8 8 0.6407 -2.7180 -0.0006 9 6 2.8273 -3.5745 -0.0006 10 8 4.0149 -3.3228 0.0000 11 7 2.4101 -4.8560 -0.0001 12 6 3.3898 -5.9453 0.0005 13 6 2.6583 -7.2890 0.0003 14 1 1.9671 -7.3270 -0.8417 15 6 3.6765 -8.4249 -0.1233 16 6 2.9424 -9.7681 -0.1564 17 6 2.1658 -9.9541 1.1509 18 7 1.2889 -8.7921 1.3494 19 6 -0.0525 -8.9596 1.5679 20 1 -0.5586 -9.8303 1.1778 21 6 -0.7619 -8.0104 2.2907 22 7 -2.0701 -7.9329 2.1690 23 14 0.1403 -6.8428 3.4364 24 1 0.4679 -5.5903 2.7090 25 1 -0.7239 -6.5268 4.6020 26 1 1.3941 -7.4832 3.9089 27 6 1.8785 -7.4469 1.3094 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9013 2.1179 0.0006 32 1 4.4115 1.3647 -0.0003 33 1 4.4691 -1.3068 0.0095 34 1 1.4612 -5.0571 -0.0001 35 1 4.0147 -5.8715 0.8905 36 1 4.0149 -5.8722 -0.8895 37 1 4.2496 -8.3005 -1.0421 38 1 4.3521 -8.4015 0.7318 39 1 3.6662 -10.5754 -0.2677 40 1 2.2487 -9.7832 -0.9970 41 1 2.8651 -10.0305 1.9835 42 1 1.5638 -10.8610 1.0949 43 1 -2.5659 -7.2698 2.6744 44 1 2.5544 -7.3190 2.1549 45 1 1.0882 -6.6977 1.3566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354084992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:39 Heat of formation + Delta-G solvation = -13.801539 kcal Electronic energy + Delta-G solvation = -27222.439750 eV Core-core repulsion = 23434.069728 eV Total energy + Delta-G solvation = -3788.370022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71535 -41.17710 -39.82498 -39.26077 -36.41071 -34.87482 -33.95019 -32.92057 -32.13467 -31.14908 -27.92576 -27.51787 -27.18348 -25.77850 -24.15263 -22.81890 -22.21641 -21.64926 -20.93408 -20.34806 -18.90458 -18.66986 -18.23208 -17.38235 -17.16453 -17.09291 -16.35975 -15.94835 -15.82596 -15.55902 -15.53738 -15.17502 -14.86184 -14.78430 -14.64012 -14.48745 -14.23615 -13.97137 -13.60784 -13.41029 -13.31556 -13.26659 -13.10860 -13.04380 -12.60379 -12.46191 -12.23243 -12.11885 -11.71069 -11.61927 -11.37945 -11.28305 -10.71610 -10.62686 -10.32685 -9.80435 -9.35829 -8.94704 -8.21181 -5.51081 -0.60091 1.03032 1.22261 1.33103 1.39650 1.40915 1.79445 2.07528 2.27997 2.34745 2.99335 3.11992 3.30717 3.78602 3.82856 3.89226 3.89983 3.95334 4.07121 4.28529 4.30430 4.37384 4.42137 4.46161 4.51764 4.57363 4.65263 4.69781 4.73165 4.85060 4.97336 4.99316 5.09886 5.18052 5.21034 5.23513 5.30136 5.31539 5.56245 5.59461 5.80903 5.84411 5.94345 6.09800 6.20119 6.26877 6.75644 6.89367 7.60061 8.00765 8.98711 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.003835 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.925111 B = 7299.758824 C = 8604.966574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.415 5.415 3 C 0.064 3.936 4 C -0.233 4.233 5 C -0.083 4.083 6 C -0.143 4.143 7 C 0.406 3.594 8 O -0.476 6.476 9 C 0.491 3.509 10 O -0.523 6.523 11 N -0.702 5.702 12 C 0.127 3.873 13 C -0.109 4.109 14 H 0.072 0.928 15 C -0.096 4.096 16 C -0.125 4.125 17 C 0.137 3.863 18 N -0.620 5.620 19 C -0.245 4.245 20 H 0.056 0.944 21 C -0.028 4.028 22 N -0.953 5.953 23 Si 0.936 3.064 24 H -0.280 1.280 25 H -0.313 1.313 26 H -0.264 1.264 27 C 0.129 3.871 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.219 0.781 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.409 0.591 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.260 0.740 44 H 0.027 0.973 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.452 16.828 -7.086 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.087 5.087 3 C -0.076 4.076 4 C -0.256 4.256 5 C -0.110 4.110 6 C -0.251 4.251 7 C 0.287 3.713 8 O -0.356 6.356 9 C 0.274 3.726 10 O -0.401 6.401 11 N -0.354 5.354 12 C 0.004 3.996 13 C -0.129 4.129 14 H 0.090 0.910 15 C -0.134 4.134 16 C -0.164 4.164 17 C 0.012 3.988 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.074 0.926 21 C -0.223 4.223 22 N -0.599 5.599 23 Si 0.766 3.234 24 H -0.207 1.207 25 H -0.242 1.242 26 H -0.188 1.188 27 C 0.004 3.996 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.098 0.902 31 H 0.235 0.765 32 H 0.191 0.809 33 H 0.176 0.824 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.141 16.804 -7.028 22.460 hybrid contribution -0.970 0.145 0.935 1.355 sum 12.170 16.949 -6.093 21.737 Atomic orbital electron populations 1.22496 0.74875 1.06217 1.04699 1.44179 1.07800 1.05106 1.51620 1.23025 0.90463 0.92873 1.01206 1.21439 0.97565 0.94489 1.12087 1.22391 0.94884 0.96599 0.97165 1.19226 0.92410 0.87782 1.25708 1.20231 0.88310 0.89129 0.73607 1.90653 1.19037 1.87123 1.38766 1.20417 0.89429 0.84442 0.78338 1.90639 1.16828 1.83796 1.48837 1.46161 1.12185 1.05576 1.71495 1.21654 0.90589 0.83757 1.03573 1.21839 0.98239 0.94247 0.98612 0.90955 1.21387 0.96258 0.92552 1.03231 1.21904 0.99115 0.97945 0.97432 1.21207 0.92399 0.89020 0.96134 1.44498 1.04396 1.01545 1.84031 1.18900 0.83749 1.07931 1.26908 0.92639 1.25777 0.95534 1.00576 1.00385 1.69942 1.07717 1.37938 1.44306 0.86085 0.78324 0.79533 0.79482 1.20719 1.24199 1.18817 1.21383 0.95491 0.86916 0.95835 0.90030 0.85652 0.90236 0.76480 0.80913 0.82391 0.75574 0.90757 0.88663 0.89272 0.91130 0.88999 0.92972 0.94818 0.92820 0.93046 0.95541 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.53 127.77 1.35 2.32 16 2 N -0.41 -8.82 3.15 -538.89 -1.70 -10.52 16 3 C 0.06 0.94 11.35 83.67 0.95 1.89 16 4 C -0.23 -4.05 10.81 22.00 0.24 -3.81 16 5 C -0.08 -2.07 9.95 22.69 0.23 -1.84 16 6 C -0.14 -4.00 6.72 39.15 0.26 -3.73 16 7 C 0.41 13.16 7.00 26.00 0.18 13.35 16 8 O -0.48 -17.09 14.64 -4.06 -0.06 -17.15 16 9 C 0.49 16.05 7.85 87.16 0.68 16.74 16 10 O -0.52 -17.36 14.04 -3.41 -0.05 -17.40 16 11 N -0.70 -22.82 5.32 -464.77 -2.47 -25.29 16 12 C 0.13 3.60 5.07 86.38 0.44 4.04 16 13 C -0.11 -3.44 2.37 -10.72 -0.03 -3.47 16 14 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 15 C -0.10 -2.45 5.17 30.64 0.16 -2.29 16 16 C -0.13 -3.53 6.08 30.69 0.19 -3.34 16 17 C 0.14 5.08 6.52 86.36 0.56 5.64 16 18 N -0.62 -28.95 2.77 -699.11 -1.94 -30.89 16 19 C -0.25 -13.98 10.03 84.03 0.84 -13.14 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 21 C -0.03 -1.64 5.23 84.86 0.44 -1.20 16 22 N -0.95 -60.72 13.97 21.65 0.30 -60.41 16 23 Si 0.94 48.22 24.35 68.60 1.67 49.89 16 24 H -0.28 -13.94 6.62 99.48 0.66 -13.28 16 25 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 26 H -0.26 -13.05 6.64 99.48 0.66 -12.39 16 27 C 0.13 5.38 3.29 86.36 0.28 5.66 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.78 6.26 -2.38 -0.01 1.76 16 31 H 0.22 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.16 4.14 6.07 -2.92 -0.02 4.13 16 34 H 0.41 14.45 7.16 -92.70 -0.66 13.78 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 43 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.03 1.11 7.08 -2.39 -0.02 1.09 16 45 H 0.04 2.07 3.70 -2.39 -0.01 2.06 16 Total: -1.00 -75.53 358.67 2.79 -72.74 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.25 Total: 22.21 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.78 Total: 16.83 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.80 Total: -127.11 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.11 Total: -34.56 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.67 Total: 49.89 kcal Total: -75.53 2.79 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354084992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.941 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds