Wall clock time and date at job start Fri Apr 10 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34884 * 125.64765 * 2 1 4 4 C 1.35876 * 109.08490 * 179.97438 * 3 2 1 5 5 C 1.39390 * 107.91863 * 359.77240 * 4 3 2 6 6 C 1.37849 * 125.65115 * 179.97438 * 2 1 3 7 7 C 1.41524 * 126.31312 * 359.97438 * 6 2 1 8 8 O 1.21606 * 120.00308 * 359.97438 * 7 6 2 9 9 C 1.49100 * 119.99851 * 180.02562 * 7 6 2 10 10 O 1.21390 * 120.00127 * 359.72301 * 9 7 6 11 11 N 1.34781 * 119.99797 * 180.02562 * 9 7 6 12 12 C 1.46504 * 119.99445 * 179.72237 * 11 9 7 13 13 C 1.53003 * 109.46695 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.49940 * 304.93656 * 13 12 11 15 15 C 1.53038 * 109.49899 * 184.84092 * 13 12 11 16 16 C 1.53037 * 109.53928 * 178.68263 * 15 13 12 17 17 C 1.53195 * 109.31194 * 61.36498 * 16 15 13 18 18 N 1.46920 * 108.77315 * 305.36193 * 17 16 15 19 19 C 1.36942 * 120.63140 * 233.58463 * 18 17 16 20 20 H 1.08003 * 119.99694 * 151.84427 * 19 18 17 21 21 C 1.38804 * 120.00164 * 331.85538 * 19 18 17 22 22 N 1.31620 * 119.99753 * 343.06070 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 163.06384 * 21 19 18 24 24 H 1.48503 * 109.47007 * 90.00022 * 23 21 19 25 25 H 1.48504 * 109.46953 * 209.99469 * 23 21 19 26 26 H 1.48491 * 109.47044 * 329.99756 * 23 21 19 27 27 C 1.46922 * 118.74262 * 53.61295 * 18 17 16 28 28 H 1.08997 * 109.47103 * 270.02527 * 1 2 3 29 29 H 1.09001 * 109.47083 * 30.02967 * 1 2 3 30 30 H 1.09002 * 109.47087 * 150.02801 * 1 2 3 31 31 H 1.08002 * 125.45730 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.03942 * 180.02562 * 4 3 2 33 33 H 1.07998 * 126.53592 * 180.23055 * 5 4 3 34 34 H 0.96993 * 120.00009 * 359.72232 * 11 9 7 35 35 H 1.08995 * 109.47065 * 299.99353 * 12 11 9 36 36 H 1.08999 * 109.47564 * 60.00244 * 12 11 9 37 37 H 1.09002 * 109.45883 * 298.70178 * 15 13 12 38 38 H 1.08999 * 109.46300 * 58.66058 * 15 13 12 39 39 H 1.08995 * 109.49866 * 301.41202 * 16 15 13 40 40 H 1.08999 * 109.52303 * 181.32453 * 16 15 13 41 41 H 1.09000 * 109.58688 * 185.57691 * 17 16 15 42 42 H 1.09002 * 109.70706 * 65.22296 * 17 16 15 43 43 H 0.97003 * 120.00078 * 180.02562 * 22 21 19 44 44 H 1.08992 * 109.59263 * 186.60386 * 27 18 17 45 45 H 1.09004 * 109.59093 * 66.17316 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5535 0.7088 0.0006 5 6 3.5864 -0.6847 0.0062 6 6 2.2684 -1.1201 0.0005 7 6 1.8302 -2.4658 0.0016 8 8 0.6406 -2.7180 0.0027 9 6 2.8273 -3.5745 0.0026 10 8 4.0148 -3.3228 -0.0026 11 7 2.4100 -4.8560 0.0031 12 6 3.3897 -5.9453 -0.0020 13 6 2.6581 -7.2891 0.0004 14 1 1.9711 -7.3279 0.8459 15 6 3.6769 -8.4251 0.1168 16 6 2.9441 -9.7682 0.1524 17 6 2.1609 -9.9527 -1.1513 18 7 1.2824 -8.7909 -1.3436 19 6 -0.0600 -8.9588 -1.5555 20 1 -0.7548 -8.1889 -1.2537 21 6 -0.5279 -10.1185 -2.1579 22 7 0.3016 -10.8968 -2.8201 23 14 -2.3348 -10.5745 -2.0288 24 1 -3.0783 -9.9790 -3.1681 25 1 -2.4761 -12.0524 -2.0640 26 1 -2.8865 -10.0548 -0.7519 27 6 1.8716 -7.4456 -1.3049 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9013 2.1179 -0.0004 32 1 4.4114 1.3647 0.0011 33 1 4.4691 -1.3070 0.0116 34 1 1.4611 -5.0571 0.0070 35 1 4.0108 -5.8710 -0.8946 36 1 4.0184 -5.8728 0.8854 37 1 4.3481 -8.4003 -0.7417 38 1 4.2547 -8.3024 1.0328 39 1 2.2546 -9.7842 0.9964 40 1 3.6685 -10.5757 0.2589 41 1 1.5594 -10.8597 -1.0909 42 1 2.8543 -10.0293 -1.9889 43 1 -0.0254 -11.7070 -3.2414 44 1 1.0792 -6.6983 -1.3458 45 1 2.5430 -7.3161 -2.1537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354084993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:42 Heat of formation + Delta-G solvation = 2.634759 kcal Electronic energy + Delta-G solvation = -26612.430016 eV Core-core repulsion = 22824.772726 eV Total energy + Delta-G solvation = -3787.657290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84153 -40.04498 -38.43378 -37.74061 -34.96631 -33.20547 -33.01118 -30.50771 -30.41394 -30.22858 -26.82306 -26.45394 -25.30289 -24.46008 -22.18043 -21.65568 -20.91638 -20.67376 -19.59596 -18.99344 -17.72132 -17.18491 -16.63675 -16.17452 -15.99351 -15.36009 -14.89772 -14.85576 -14.47406 -14.35536 -13.92967 -13.77751 -13.57246 -13.46363 -13.40286 -12.80475 -12.60596 -12.53698 -12.36758 -12.30144 -12.23701 -12.18666 -11.37374 -11.31087 -11.02169 -10.70990 -10.51855 -10.25020 -10.19142 -9.93923 -9.70959 -9.44495 -9.43639 -9.07871 -9.00428 -8.53248 -8.47047 -6.67697 -5.79743 -3.22597 0.42913 2.00052 2.30424 2.62210 3.02503 3.34493 3.36740 3.43836 3.46225 4.26140 4.47919 4.49771 4.64575 4.81386 4.89062 5.04548 5.12661 5.20189 5.26861 5.34510 5.41011 5.44236 5.59985 5.79256 5.85635 5.92742 5.93606 5.96614 6.20323 6.27675 6.34653 6.39623 6.42493 6.58477 6.67197 6.69993 6.75434 6.84124 6.88660 6.93594 6.98146 7.39166 7.45058 7.66893 7.78715 7.98969 8.44112 9.20411 9.83639 10.40318 11.28668 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.002857 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.031523 B = 9798.921305 C =11152.632504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.410 5.410 3 C 0.038 3.962 4 C -0.226 4.226 5 C -0.076 4.076 6 C -0.104 4.104 7 C 0.414 3.586 8 O -0.451 6.451 9 C 0.492 3.508 10 O -0.515 6.515 11 N -0.694 5.694 12 C 0.124 3.876 13 C -0.119 4.119 14 H 0.075 0.925 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.152 3.848 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.051 0.949 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 20.594 7.383 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.082 5.082 3 C -0.101 4.101 4 C -0.250 4.250 5 C -0.103 4.103 6 C -0.212 4.212 7 C 0.293 3.707 8 O -0.328 6.328 9 C 0.273 3.727 10 O -0.391 6.391 11 N -0.347 5.347 12 C 0.001 3.999 13 C -0.140 4.140 14 H 0.093 0.907 15 C -0.137 4.137 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.026 3.974 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.969 20.383 7.274 22.206 hybrid contribution -1.394 -0.271 -0.010 1.420 sum 3.575 20.113 7.264 21.681 Atomic orbital electron populations 1.22356 0.75976 1.05494 1.04149 1.43911 1.06917 1.05251 1.52140 1.22195 0.91078 0.91694 1.05129 1.21065 0.95958 0.95597 1.12350 1.22329 0.95692 0.95045 0.97192 1.19297 0.91323 0.87787 1.22823 1.20133 0.88722 0.88271 0.73599 1.90634 1.18440 1.86842 1.36896 1.20213 0.89298 0.84323 0.78855 1.90669 1.16690 1.83596 1.48186 1.46005 1.12173 1.05011 1.71464 1.21631 0.90916 0.85079 1.02298 1.21987 0.98132 0.91881 1.02007 0.90691 1.21333 0.96818 0.95051 1.00483 1.22168 0.98882 0.95230 1.01808 1.20800 0.91948 0.92185 0.90775 1.44029 1.04869 0.99375 1.83051 1.19161 0.82248 1.03979 1.32962 0.91744 1.25041 0.97590 0.99724 0.97220 1.70037 1.34052 1.15350 1.35183 0.86317 0.85132 0.77491 0.77959 1.21394 1.21553 1.20468 1.20914 0.95027 0.89056 0.92453 0.90308 0.89629 0.87858 0.81176 0.83639 0.81335 0.75047 0.90904 0.91305 0.92382 0.93354 0.92729 0.93122 0.89577 0.96398 0.93629 0.93090 0.96270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.53 59.85 0.63 1.10 16 2 N -0.41 -4.16 3.15 -121.68 -0.38 -4.54 16 3 C 0.04 0.31 11.35 -17.06 -0.19 0.12 16 4 C -0.23 -2.09 10.81 -40.00 -0.43 -2.53 16 5 C -0.08 -0.90 9.95 -38.94 -0.39 -1.29 16 6 C -0.10 -1.31 6.72 -83.70 -0.56 -1.87 16 7 C 0.41 5.67 7.00 -33.82 -0.24 5.43 16 8 O -0.45 -6.52 14.64 5.27 0.08 -6.44 16 9 C 0.49 7.07 7.85 -11.75 -0.09 6.98 16 10 O -0.51 -8.05 14.04 5.46 0.08 -7.97 16 11 N -0.69 -9.76 5.32 -60.84 -0.32 -10.08 16 12 C 0.12 1.76 5.07 -4.04 -0.02 1.74 16 13 C -0.12 -1.94 2.38 -90.50 -0.21 -2.16 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.10 -1.58 5.17 -26.69 -0.14 -1.72 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 18 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 19 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 20 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 23 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.15 3.08 5.60 -3.71 -0.02 3.06 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.96 6.26 -51.93 -0.33 0.64 16 31 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.17 2.07 6.07 -52.49 -0.32 1.76 16 34 H 0.41 5.76 7.16 -40.82 -0.29 5.46 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.05 1.01 7.13 -51.93 -0.37 0.64 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -31.77 365.10 -8.72 -40.50 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.67 Total: 4.06 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.08 Total: 2.96 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.60 Total: -55.20 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.15 Total: -14.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.77 -8.72 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354084993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.131 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds