Wall clock time and date at job start Fri Apr 10 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34884 * 125.64765 * 2 1 4 4 C 1.35876 * 109.08490 * 179.97438 * 3 2 1 5 5 C 1.39390 * 107.91863 * 359.77240 * 4 3 2 6 6 C 1.37849 * 125.65115 * 179.97438 * 2 1 3 7 7 C 1.41524 * 126.31312 * 359.97438 * 6 2 1 8 8 O 1.21606 * 120.00308 * 359.97438 * 7 6 2 9 9 C 1.49100 * 119.99851 * 180.02562 * 7 6 2 10 10 O 1.21390 * 120.00127 * 359.72301 * 9 7 6 11 11 N 1.34781 * 119.99797 * 180.02562 * 9 7 6 12 12 C 1.46504 * 119.99445 * 179.72237 * 11 9 7 13 13 C 1.53003 * 109.46695 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.49940 * 304.93656 * 13 12 11 15 15 C 1.53038 * 109.49899 * 184.84092 * 13 12 11 16 16 C 1.53037 * 109.53928 * 178.68263 * 15 13 12 17 17 C 1.53195 * 109.31194 * 61.36498 * 16 15 13 18 18 N 1.46920 * 108.77315 * 305.36193 * 17 16 15 19 19 C 1.36942 * 120.63140 * 233.58463 * 18 17 16 20 20 H 1.08003 * 119.99694 * 151.84427 * 19 18 17 21 21 C 1.38804 * 120.00164 * 331.85538 * 19 18 17 22 22 N 1.31620 * 119.99753 * 343.06070 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 163.06384 * 21 19 18 24 24 H 1.48503 * 109.47007 * 90.00022 * 23 21 19 25 25 H 1.48504 * 109.46953 * 209.99469 * 23 21 19 26 26 H 1.48491 * 109.47044 * 329.99756 * 23 21 19 27 27 C 1.46922 * 118.74262 * 53.61295 * 18 17 16 28 28 H 1.08997 * 109.47103 * 270.02527 * 1 2 3 29 29 H 1.09001 * 109.47083 * 30.02967 * 1 2 3 30 30 H 1.09002 * 109.47087 * 150.02801 * 1 2 3 31 31 H 1.08002 * 125.45730 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.03942 * 180.02562 * 4 3 2 33 33 H 1.07998 * 126.53592 * 180.23055 * 5 4 3 34 34 H 0.96993 * 120.00009 * 359.72232 * 11 9 7 35 35 H 1.08995 * 109.47065 * 299.99353 * 12 11 9 36 36 H 1.08999 * 109.47564 * 60.00244 * 12 11 9 37 37 H 1.09002 * 109.45883 * 298.70178 * 15 13 12 38 38 H 1.08999 * 109.46300 * 58.66058 * 15 13 12 39 39 H 1.08995 * 109.49866 * 301.41202 * 16 15 13 40 40 H 1.08999 * 109.52303 * 181.32453 * 16 15 13 41 41 H 1.09000 * 109.58688 * 185.57691 * 17 16 15 42 42 H 1.09002 * 109.70706 * 65.22296 * 17 16 15 43 43 H 0.97003 * 120.00078 * 180.02562 * 22 21 19 44 44 H 1.08992 * 109.59263 * 186.60386 * 27 18 17 45 45 H 1.09004 * 109.59093 * 66.17316 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5535 0.7088 0.0006 5 6 3.5864 -0.6847 0.0062 6 6 2.2684 -1.1201 0.0005 7 6 1.8302 -2.4658 0.0016 8 8 0.6406 -2.7180 0.0027 9 6 2.8273 -3.5745 0.0026 10 8 4.0148 -3.3228 -0.0026 11 7 2.4100 -4.8560 0.0031 12 6 3.3897 -5.9453 -0.0020 13 6 2.6581 -7.2891 0.0004 14 1 1.9711 -7.3279 0.8459 15 6 3.6769 -8.4251 0.1168 16 6 2.9441 -9.7682 0.1524 17 6 2.1609 -9.9527 -1.1513 18 7 1.2824 -8.7909 -1.3436 19 6 -0.0600 -8.9588 -1.5555 20 1 -0.7548 -8.1889 -1.2537 21 6 -0.5279 -10.1185 -2.1579 22 7 0.3016 -10.8968 -2.8201 23 14 -2.3348 -10.5745 -2.0288 24 1 -3.0783 -9.9790 -3.1681 25 1 -2.4761 -12.0524 -2.0640 26 1 -2.8865 -10.0548 -0.7519 27 6 1.8716 -7.4456 -1.3049 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9013 2.1179 -0.0004 32 1 4.4114 1.3647 0.0011 33 1 4.4691 -1.3070 0.0116 34 1 1.4611 -5.0571 0.0070 35 1 4.0108 -5.8710 -0.8946 36 1 4.0184 -5.8728 0.8854 37 1 4.3481 -8.4003 -0.7417 38 1 4.2547 -8.3024 1.0328 39 1 2.2546 -9.7842 0.9964 40 1 3.6685 -10.5757 0.2589 41 1 1.5594 -10.8597 -1.0909 42 1 2.8543 -10.0293 -1.9889 43 1 -0.0254 -11.7070 -3.2414 44 1 1.0792 -6.6983 -1.3458 45 1 2.5430 -7.3161 -2.1537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354084993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:42 Heat of formation + Delta-G solvation = -16.970697 kcal Electronic energy + Delta-G solvation = -26613.280173 eV Core-core repulsion = 22824.772726 eV Total energy + Delta-G solvation = -3788.507447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66308 -41.09812 -39.64589 -39.13230 -36.39758 -34.71377 -33.90578 -32.31634 -31.98750 -31.09165 -27.72136 -27.46429 -27.21149 -25.59233 -23.84541 -22.89967 -22.16152 -21.59990 -20.81136 -20.22482 -18.81336 -18.45754 -18.16016 -17.16405 -17.02076 -16.83773 -16.34364 -15.84723 -15.79338 -15.58975 -15.34626 -15.06486 -14.72412 -14.63596 -14.51238 -14.19982 -14.03735 -13.78458 -13.54468 -13.26695 -13.22048 -13.02939 -13.00127 -12.89149 -12.51886 -12.40488 -12.29697 -11.99335 -11.83506 -11.57639 -11.32834 -11.11093 -10.57690 -10.54567 -10.24155 -9.75914 -9.31487 -8.68404 -7.88534 -5.34304 -0.54157 1.09301 1.44463 1.45025 1.46444 1.56300 1.83561 2.13027 2.34231 2.49741 3.20518 3.26213 3.57393 3.88240 3.94229 3.96098 3.99136 4.04911 4.10901 4.34361 4.41123 4.41654 4.54557 4.56140 4.58633 4.70000 4.73613 4.85366 4.88164 4.97903 5.06507 5.10811 5.21504 5.24465 5.31357 5.35107 5.42599 5.55887 5.60778 5.66171 5.78858 5.85189 6.01230 6.24228 6.35794 6.38675 6.86121 7.14103 7.85309 8.36680 9.17574 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.002857 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.031523 B = 9798.921305 C =11152.632504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.414 5.414 3 C 0.062 3.938 4 C -0.235 4.235 5 C -0.087 4.087 6 C -0.141 4.141 7 C 0.413 3.587 8 O -0.471 6.471 9 C 0.491 3.509 10 O -0.529 6.529 11 N -0.694 5.694 12 C 0.134 3.866 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.095 4.095 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.610 5.610 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.270 1.270 27 C 0.151 3.849 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.217 0.783 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.051 0.949 42 H -0.006 1.006 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 23.310 8.791 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.086 5.086 3 C -0.077 4.077 4 C -0.258 4.258 5 C -0.114 4.114 6 C -0.249 4.249 7 C 0.294 3.706 8 O -0.351 6.351 9 C 0.273 3.727 10 O -0.407 6.407 11 N -0.347 5.347 12 C 0.010 3.990 13 C -0.123 4.123 14 H 0.093 0.907 15 C -0.133 4.133 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.195 1.195 27 C 0.025 3.975 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.234 0.766 32 H 0.187 0.813 33 H 0.174 0.826 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 5.169 23.115 8.699 25.233 hybrid contribution -1.399 -0.973 -0.484 1.772 sum 3.770 22.142 8.215 23.916 Atomic orbital electron populations 1.22506 0.74694 1.06138 1.04901 1.44175 1.07860 1.05012 1.51584 1.22982 0.90442 0.92922 1.01402 1.21425 0.97584 0.94604 1.12203 1.22388 0.95120 0.96516 0.97355 1.19248 0.92218 0.88013 1.25452 1.20077 0.88264 0.88736 0.73517 1.90622 1.18731 1.87027 1.38675 1.20445 0.89360 0.84529 0.78339 1.90657 1.17277 1.83847 1.48914 1.46016 1.12166 1.05095 1.71379 1.21511 0.90615 0.83794 1.03032 1.21751 0.97908 0.93441 0.99232 0.90716 1.21328 0.96562 0.93011 1.02400 1.22000 0.98850 0.97754 0.98336 1.20651 0.91260 0.90732 0.92696 1.44298 1.04494 1.01156 1.83329 1.19498 0.83756 1.03982 1.32146 0.91676 1.25795 1.01511 0.99924 0.97383 1.70192 1.35776 1.15660 1.36460 0.85307 0.80464 0.76773 0.78093 1.21232 1.21797 1.19475 1.21031 0.95133 0.86947 0.94390 0.89493 0.86125 0.90068 0.76642 0.81263 0.82602 0.75045 0.91172 0.89487 0.92246 0.89712 0.92959 0.90986 0.93092 0.98744 0.94115 0.93295 0.97274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.53 127.77 1.35 2.11 16 2 N -0.41 -7.58 3.15 -538.89 -1.70 -9.27 16 3 C 0.06 0.80 11.35 83.68 0.95 1.75 16 4 C -0.24 -3.76 10.81 22.00 0.24 -3.52 16 5 C -0.09 -1.99 9.95 22.68 0.23 -1.77 16 6 C -0.14 -3.49 6.72 39.14 0.26 -3.23 16 7 C 0.41 11.48 7.00 26.00 0.18 11.66 16 8 O -0.47 -13.93 14.64 -4.05 -0.06 -13.99 16 9 C 0.49 14.20 7.85 87.16 0.68 14.88 16 10 O -0.53 -16.55 14.04 -3.37 -0.05 -16.59 16 11 N -0.69 -19.33 5.32 -464.75 -2.47 -21.80 16 12 C 0.13 3.61 5.07 86.38 0.44 4.04 16 13 C -0.10 -3.23 2.38 -10.71 -0.03 -3.26 16 14 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 15 C -0.10 -2.85 5.17 30.62 0.16 -2.69 16 16 C -0.13 -4.71 6.08 30.67 0.19 -4.53 16 17 C 0.17 8.32 5.30 86.36 0.46 8.78 16 18 N -0.61 -30.70 2.99 -699.11 -2.09 -32.79 16 19 C -0.26 -14.63 9.58 84.03 0.81 -13.83 16 20 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 21 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 22 N -0.93 -55.97 11.20 21.65 0.24 -55.73 16 23 Si 0.97 45.30 29.59 68.60 2.03 47.33 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.15 6.16 5.60 86.36 0.48 6.65 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.48 6.26 -2.39 -0.01 1.47 16 31 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.16 3.88 6.07 -2.91 -0.02 3.87 16 34 H 0.41 11.57 7.16 -92.71 -0.66 10.91 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.05 1.98 7.13 -2.39 -0.02 1.96 16 45 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 Total: -1.00 -71.49 365.10 3.05 -68.44 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.34 Total: 19.80 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 6.81 Total: 14.60 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.02 Total: -119.59 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.11 Total: -30.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.49 3.05 -68.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354084993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.473 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds