Wall clock time and date at job start Fri Apr 10 2020 18:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47909 * 111.00014 * 2 1 4 4 C 1.53996 * 107.05677 * 145.84606 * 3 2 1 5 5 C 1.54603 * 105.13972 * 358.77864 * 4 3 2 6 6 O 1.42893 * 110.72171 * 96.39743 * 5 4 3 7 7 C 1.53000 * 110.72219 * 219.50689 * 5 4 3 8 8 N 1.46491 * 109.47013 * 177.54776 * 7 5 4 9 9 C 1.34784 * 119.99959 * 179.97438 * 8 7 5 10 10 O 1.21580 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.39240 * 120.00003 * 176.69113 * 11 9 8 13 13 C 1.39476 * 119.83796 * 217.52730 * 12 11 9 14 14 C 1.36371 * 120.17058 * 179.76118 * 13 12 11 15 15 C 1.40871 * 119.82773 * 0.51813 * 14 13 12 16 16 C 1.41154 * 120.16238 * 179.72184 * 15 14 13 17 17 H 1.07997 * 119.99914 * 157.94392 * 16 15 14 18 18 C 1.39896 * 120.00116 * 337.93474 * 16 15 14 19 19 N 1.30876 * 120.00349 * 327.62582 * 18 16 15 20 20 Si 1.86799 * 119.99919 * 147.61881 * 18 16 15 21 21 H 1.48503 * 109.46944 * 94.99153 * 20 18 16 22 22 H 1.48499 * 109.47487 * 214.99377 * 20 18 16 23 23 H 1.48503 * 109.47120 * 334.99311 * 20 18 16 24 24 C 1.40867 * 119.67088 * 359.73491 * 15 14 13 25 25 C 1.36373 * 119.83207 * 0.02562 * 24 15 14 26 26 C 1.48525 * 111.00265 * 117.39895 * 2 1 3 27 27 H 1.08997 * 109.47271 * 59.87059 * 1 2 3 28 28 H 1.09004 * 109.47215 * 179.87269 * 1 2 3 29 29 H 1.09003 * 109.46800 * 299.87022 * 1 2 3 30 30 H 1.09004 * 109.91606 * 26.49676 * 3 2 1 31 31 H 1.08991 * 109.91644 * 265.20044 * 3 2 1 32 32 H 1.08994 * 110.31008 * 239.86331 * 4 3 2 33 33 H 1.09003 * 110.39124 * 117.73407 * 4 3 2 34 34 H 0.96710 * 113.99538 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47093 * 297.55034 * 7 5 4 36 36 H 1.09005 * 109.47263 * 57.54816 * 7 5 4 37 37 H 0.97000 * 120.00346 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00076 * 356.69448 * 11 9 8 39 39 H 1.08002 * 119.91331 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.08420 * 180.25478 * 14 13 12 41 41 H 0.96995 * 120.00567 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.08358 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.92086 * 180.02562 * 25 24 15 44 44 H 1.08999 * 110.66812 * 81.84114 * 26 2 1 45 45 H 1.09001 * 110.67237 * 318.71377 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0930 1.3153 6 8 4.3175 -0.8285 0.4510 7 6 3.9631 -0.1309 2.7559 8 7 4.0402 -1.5214 3.2104 9 6 4.4703 -1.8001 4.4570 10 8 4.7938 -0.8974 5.2044 11 7 4.5417 -3.0795 4.8749 12 6 5.0507 -3.3720 6.1375 13 6 5.8375 -4.5087 6.3222 14 6 6.3436 -4.7991 7.5548 15 6 6.0607 -3.9535 8.6454 16 6 6.5760 -4.2505 9.9255 17 1 6.6752 -3.4675 10.6626 18 6 6.9580 -5.5592 10.2394 19 7 6.3227 -6.5719 9.7069 20 14 8.3750 -5.8612 11.4185 21 1 7.8430 -6.0649 12.7899 22 1 9.1237 -7.0711 10.9932 23 1 9.2849 -4.6876 11.4098 24 6 5.2609 -2.8101 8.4521 25 6 4.7659 -2.5301 7.2126 26 6 2.0013 -0.6381 1.2310 27 1 -0.3633 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5118 0.8912 30 1 1.2758 2.0562 0.4572 31 1 2.2121 1.6967 -1.0211 32 1 3.2137 2.0428 1.6766 33 1 4.1479 1.6460 0.2037 34 1 4.4459 -1.7502 0.7141 35 1 4.9540 0.3213 2.8002 36 1 3.2811 0.4245 3.3997 37 1 3.7824 -2.2417 2.6140 38 1 4.2385 -3.7964 4.2962 39 1 6.0501 -5.1583 5.4860 40 1 6.9561 -5.6774 7.6954 41 1 6.5878 -7.4793 9.9242 42 1 5.0402 -2.1570 9.2834 43 1 4.1529 -1.6537 7.0627 44 1 2.0041 -1.7235 1.1314 45 1 1.4238 -0.3324 2.1035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358434427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:53 Heat of formation + Delta-G solvation = -44.304774 kcal Electronic energy + Delta-G solvation = -26147.723861 eV Core-core repulsion = 22358.031120 eV Total energy + Delta-G solvation = -3789.692741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42733 -39.50349 -37.44420 -36.38333 -34.55721 -34.07452 -33.00162 -31.90212 -29.64330 -29.40869 -28.70218 -27.06139 -25.14084 -24.14555 -21.92724 -21.49354 -20.78652 -20.72688 -20.09131 -18.30705 -17.37408 -17.28831 -16.61207 -15.96061 -15.76391 -15.37812 -15.20765 -14.91824 -14.60043 -14.15072 -14.01559 -13.87159 -13.62321 -13.35530 -12.99045 -12.71128 -12.56872 -12.42697 -12.07301 -12.01349 -11.97685 -11.89389 -11.58125 -11.41866 -11.16571 -11.10284 -10.93833 -10.52071 -10.25837 -10.20500 -9.73654 -9.62490 -9.15274 -9.03422 -8.83020 -8.68448 -7.52967 -7.12077 -6.86284 -4.25162 2.66089 2.92058 3.04687 3.06664 3.12484 3.19868 3.55337 3.65717 3.78074 3.90497 4.13077 4.19206 4.47830 4.52534 4.62543 4.74790 4.94138 5.01198 5.04224 5.22394 5.26415 5.39222 5.44718 5.49292 5.58558 5.67228 5.70880 5.73594 6.19851 6.37859 6.40755 6.47356 6.58024 6.77985 6.80763 7.02009 7.09926 7.25173 7.31583 7.32696 7.60614 7.86562 7.96054 8.04669 8.28166 8.46399 8.57491 8.86050 8.91581 9.10505 10.03892 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.002116 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.238942 B =13230.651916 C =13313.973292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.515 5.515 3 C 0.037 3.963 4 C -0.117 4.117 5 C 0.121 3.879 6 O -0.538 6.538 7 C 0.122 3.878 8 N -0.754 5.754 9 C 0.695 3.305 10 O -0.577 6.577 11 N -0.664 5.664 12 C -0.004 4.004 13 C -0.103 4.103 14 C -0.171 4.171 15 C 0.112 3.888 16 C -0.466 4.466 17 H 0.081 0.919 18 C 0.088 3.912 19 N -0.771 5.771 20 Si 0.895 3.105 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.223 4.223 25 C -0.066 4.066 26 C 0.010 3.990 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.375 0.625 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.388 0.612 38 H 0.390 0.610 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.283 0.717 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 8.019 -17.515 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.091 4.091 4 C -0.156 4.156 5 C 0.079 3.921 6 O -0.344 6.344 7 C -0.003 4.003 8 N -0.413 5.413 9 C 0.396 3.604 10 O -0.454 6.454 11 N -0.309 5.309 12 C -0.096 4.096 13 C -0.124 4.124 14 C -0.191 4.191 15 C 0.109 3.891 16 C -0.494 4.494 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.244 4.244 25 C -0.086 4.086 26 C -0.118 4.118 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.222 0.778 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.221 0.779 38 H 0.223 0.777 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.079 8.914 -17.618 21.334 hybrid contribution -0.086 -1.139 0.950 1.486 sum -8.165 7.775 -16.668 20.123 Atomic orbital electron populations 1.22557 0.87704 1.02381 1.00852 1.64718 1.08052 1.14913 1.36177 1.22886 0.95323 0.89902 1.00962 1.22403 0.98869 0.93648 1.00631 1.22282 0.88475 0.93168 0.88195 1.86605 1.67589 1.26990 1.53169 1.21762 1.02632 0.82990 0.92962 1.45023 1.73701 1.08053 1.14508 1.15982 0.78945 0.84035 0.81434 1.90920 1.55071 1.45180 1.54226 1.42035 1.65932 1.05408 1.17566 1.16841 1.08846 1.01293 0.82610 1.20146 0.98377 0.96689 0.97168 1.20607 1.04862 1.02144 0.91451 1.17589 0.88165 0.90345 0.93013 1.19489 1.37174 0.94033 0.98722 0.90055 1.25930 0.95708 0.95768 0.95925 1.69946 1.32655 1.00312 1.36464 0.86522 0.82118 0.79094 0.80406 1.19503 1.19913 1.18107 1.20599 1.05839 1.02158 0.95755 1.20317 0.98966 0.97672 0.91638 1.23926 0.95323 1.00571 0.91984 0.91171 0.91151 0.95267 0.93406 0.89902 0.89581 0.89174 0.77753 0.90455 0.90815 0.77856 0.77725 0.89332 0.87488 0.90652 0.88793 0.87953 0.89608 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.40 60.06 0.56 0.66 16 2 N -0.51 -4.42 5.55 -238.72 -1.33 -5.75 16 3 C 0.04 0.28 6.70 -2.75 -0.02 0.26 16 4 C -0.12 -0.93 6.27 -25.37 -0.16 -1.09 16 5 C 0.12 1.06 1.03 -88.75 -0.09 0.97 16 6 O -0.54 -5.18 13.12 -35.23 -0.46 -5.64 16 7 C 0.12 1.32 4.74 -4.05 -0.02 1.30 16 8 N -0.75 -8.74 5.15 -65.23 -0.34 -9.08 16 9 C 0.70 12.01 8.37 -86.91 -0.73 11.28 16 10 O -0.58 -12.64 13.96 5.30 0.07 -12.57 16 11 N -0.66 -11.53 5.30 -14.10 -0.07 -11.61 16 12 C 0.00 -0.08 6.25 -83.57 -0.52 -0.60 16 13 C -0.10 -2.36 9.90 -39.79 -0.39 -2.75 16 14 C -0.17 -4.37 8.74 -39.26 -0.34 -4.72 16 15 C 0.11 3.00 5.57 -106.80 -0.60 2.41 16 16 C -0.47 -12.38 8.94 -37.86 -0.34 -12.72 16 17 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 18 C 0.09 2.18 4.77 -17.34 -0.08 2.10 16 19 N -0.77 -19.47 11.78 55.55 0.65 -18.81 16 20 Si 0.90 18.27 29.66 -169.99 -5.04 13.23 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.22 -5.75 9.74 -39.26 -0.38 -6.13 16 25 C -0.07 -1.60 8.59 -39.79 -0.34 -1.95 16 26 C 0.01 0.08 5.31 -1.90 -0.01 0.07 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.19 8.00 -51.93 -0.42 -0.22 16 30 H 0.05 0.32 7.74 -51.93 -0.40 -0.08 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.37 2.60 7.88 45.56 0.36 2.96 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.39 3.19 7.27 -40.82 -0.30 2.90 16 38 H 0.39 5.24 8.84 -40.82 -0.36 4.88 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 2.77 6.53 -52.48 -0.34 2.43 16 41 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 42 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.10 2.48 6.45 -52.49 -0.34 2.14 16 44 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 45 H 0.06 0.49 7.88 -51.93 -0.41 0.08 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -32.18 367.88 -10.40 -42.57 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.97 Total: 13.01 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.46 Total: -10.90 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.08 Total: -45.25 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.39 Total: -18.21 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.18 -10.40 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358434427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.731 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds