Wall clock time and date at job start Fri Apr 10 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47909 * 111.00014 * 2 1 4 4 C 1.53996 * 107.05677 * 145.84606 * 3 2 1 5 5 C 1.54603 * 105.13972 * 358.77864 * 4 3 2 6 6 O 1.42893 * 110.72171 * 96.39743 * 5 4 3 7 7 C 1.53000 * 110.72219 * 219.50689 * 5 4 3 8 8 N 1.46491 * 109.47013 * 177.54776 * 7 5 4 9 9 C 1.34784 * 119.99959 * 179.97438 * 8 7 5 10 10 O 1.21580 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99946 * 180.02562 * 9 8 7 12 12 C 1.39240 * 120.00003 * 176.69113 * 11 9 8 13 13 C 1.39476 * 119.83796 * 217.52730 * 12 11 9 14 14 C 1.36371 * 120.17058 * 179.76118 * 13 12 11 15 15 C 1.40871 * 119.82773 * 0.51813 * 14 13 12 16 16 C 1.41154 * 120.16238 * 179.72184 * 15 14 13 17 17 H 1.07997 * 119.99914 * 157.94392 * 16 15 14 18 18 C 1.39896 * 120.00116 * 337.93474 * 16 15 14 19 19 N 1.30876 * 120.00349 * 327.62582 * 18 16 15 20 20 Si 1.86799 * 119.99919 * 147.61881 * 18 16 15 21 21 H 1.48503 * 109.46944 * 94.99153 * 20 18 16 22 22 H 1.48499 * 109.47487 * 214.99377 * 20 18 16 23 23 H 1.48503 * 109.47120 * 334.99311 * 20 18 16 24 24 C 1.40867 * 119.67088 * 359.73491 * 15 14 13 25 25 C 1.36373 * 119.83207 * 0.02562 * 24 15 14 26 26 C 1.48525 * 111.00265 * 117.39895 * 2 1 3 27 27 H 1.08997 * 109.47271 * 59.87059 * 1 2 3 28 28 H 1.09004 * 109.47215 * 179.87269 * 1 2 3 29 29 H 1.09003 * 109.46800 * 299.87022 * 1 2 3 30 30 H 1.09004 * 109.91606 * 26.49676 * 3 2 1 31 31 H 1.08991 * 109.91644 * 265.20044 * 3 2 1 32 32 H 1.08994 * 110.31008 * 239.86331 * 4 3 2 33 33 H 1.09003 * 110.39124 * 117.73407 * 4 3 2 34 34 H 0.96710 * 113.99538 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47093 * 297.55034 * 7 5 4 36 36 H 1.09005 * 109.47263 * 57.54816 * 7 5 4 37 37 H 0.97000 * 120.00346 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00076 * 356.69448 * 11 9 8 39 39 H 1.08002 * 119.91331 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.08420 * 180.25478 * 14 13 12 41 41 H 0.96995 * 120.00567 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.08358 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.92086 * 180.02562 * 25 24 15 44 44 H 1.08999 * 110.66812 * 81.84114 * 26 2 1 45 45 H 1.09001 * 110.67237 * 318.71377 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0930 1.3153 6 8 4.3175 -0.8285 0.4510 7 6 3.9631 -0.1309 2.7559 8 7 4.0402 -1.5214 3.2104 9 6 4.4703 -1.8001 4.4570 10 8 4.7938 -0.8974 5.2044 11 7 4.5417 -3.0795 4.8749 12 6 5.0507 -3.3720 6.1375 13 6 5.8375 -4.5087 6.3222 14 6 6.3436 -4.7991 7.5548 15 6 6.0607 -3.9535 8.6454 16 6 6.5760 -4.2505 9.9255 17 1 6.6752 -3.4675 10.6626 18 6 6.9580 -5.5592 10.2394 19 7 6.3227 -6.5719 9.7069 20 14 8.3750 -5.8612 11.4185 21 1 7.8430 -6.0649 12.7899 22 1 9.1237 -7.0711 10.9932 23 1 9.2849 -4.6876 11.4098 24 6 5.2609 -2.8101 8.4521 25 6 4.7659 -2.5301 7.2126 26 6 2.0013 -0.6381 1.2310 27 1 -0.3633 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5118 0.8912 30 1 1.2758 2.0562 0.4572 31 1 2.2121 1.6967 -1.0211 32 1 3.2137 2.0428 1.6766 33 1 4.1479 1.6460 0.2037 34 1 4.4459 -1.7502 0.7141 35 1 4.9540 0.3213 2.8002 36 1 3.2811 0.4245 3.3997 37 1 3.7824 -2.2417 2.6140 38 1 4.2385 -3.7964 4.2962 39 1 6.0501 -5.1583 5.4860 40 1 6.9561 -5.6774 7.6954 41 1 6.5878 -7.4793 9.9242 42 1 5.0402 -2.1570 9.2834 43 1 4.1529 -1.6537 7.0627 44 1 2.0041 -1.7235 1.1314 45 1 1.4238 -0.3324 2.1035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358434427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:52 Heat of formation + Delta-G solvation = -69.495525 kcal Electronic energy + Delta-G solvation = -26148.816214 eV Core-core repulsion = 22358.031120 eV Total energy + Delta-G solvation = -3790.785094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55716 -40.57388 -39.15893 -37.19012 -36.19833 -35.30631 -34.70084 -32.62835 -31.45429 -30.92483 -29.82349 -27.89904 -26.64562 -25.16695 -23.44192 -22.71093 -22.25936 -21.66502 -21.33063 -19.63702 -19.16553 -18.52392 -17.72824 -17.05975 -16.70303 -16.64540 -16.53287 -16.06915 -15.74689 -15.46126 -15.26665 -15.06190 -14.62929 -14.47245 -14.33712 -13.98272 -13.89068 -13.79749 -13.48244 -13.26821 -13.06850 -12.82705 -12.66824 -12.57386 -12.49883 -12.32212 -12.16584 -11.94170 -11.82606 -11.57025 -11.28437 -10.98998 -10.93895 -10.51360 -10.17514 -9.45699 -9.42817 -8.96916 -8.69614 -6.20969 0.88125 1.15677 1.38574 1.45373 1.56437 1.71370 2.18252 2.21991 2.67565 2.93940 3.11243 3.30736 3.48961 3.53955 3.73117 3.80924 4.16354 4.25125 4.40688 4.44849 4.46504 4.50789 4.56829 4.63388 4.70308 4.76628 4.82609 4.91488 4.99442 5.00126 5.11700 5.13775 5.17541 5.28821 5.36798 5.47053 5.63623 5.77044 5.80808 6.00780 6.04348 6.12339 6.19748 6.38807 6.64404 6.71797 6.91262 7.01993 7.14209 7.66625 8.22250 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.002116 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.238942 B =13230.651916 C =13313.973292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.530 5.530 3 C 0.037 3.963 4 C -0.120 4.120 5 C 0.130 3.870 6 O -0.550 6.550 7 C 0.125 3.875 8 N -0.727 5.727 9 C 0.695 3.305 10 O -0.625 6.625 11 N -0.655 5.655 12 C 0.013 3.987 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.082 3.918 16 C -0.506 4.506 17 H 0.073 0.927 18 C 0.052 3.948 19 N -0.799 5.799 20 Si 0.971 3.029 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.245 4.245 25 C -0.077 4.077 26 C 0.013 3.987 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.385 0.615 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.413 0.587 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.294 0.706 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 7.355 -19.235 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.091 4.091 4 C -0.158 4.158 5 C 0.088 3.912 6 O -0.358 6.358 7 C 0.000 4.000 8 N -0.386 5.386 9 C 0.395 3.605 10 O -0.505 6.505 11 N -0.303 5.303 12 C -0.081 4.081 13 C -0.121 4.121 14 C -0.209 4.209 15 C 0.079 3.921 16 C -0.534 4.534 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.422 5.422 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.184 1.184 23 H -0.187 1.187 24 C -0.265 4.265 25 C -0.097 4.097 26 C -0.116 4.116 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.250 0.750 39 H 0.142 0.858 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.346 8.220 -19.420 22.679 hybrid contribution -0.119 -0.867 1.323 1.586 sum -8.465 7.353 -18.097 21.289 Atomic orbital electron populations 1.22590 0.86810 1.02777 1.01331 1.64727 1.09028 1.15405 1.36222 1.22908 0.95250 0.89838 1.01077 1.22461 0.99057 0.93268 1.01028 1.22180 0.88671 0.93840 0.86499 1.86600 1.67798 1.27973 1.53383 1.21815 1.01875 0.81971 0.94328 1.44717 1.71766 1.09355 1.12728 1.16130 0.78619 0.83199 0.82510 1.90901 1.57043 1.46483 1.56054 1.41783 1.65807 1.06481 1.16271 1.16861 1.07172 1.00067 0.83989 1.20420 0.97292 0.97088 0.97269 1.20644 1.05820 1.02063 0.92373 1.17903 0.89014 0.91205 0.93941 1.19679 1.39657 0.95080 0.98980 0.90853 1.26701 0.97537 0.94810 0.97686 1.69938 1.33636 1.01041 1.37607 0.85389 0.78276 0.78969 0.78306 1.18462 1.18446 1.18659 1.20723 1.06737 1.02500 0.96554 1.20417 0.99190 0.98134 0.91935 1.23909 0.94561 1.01092 0.92004 0.90446 0.90834 0.95041 0.92411 0.89782 0.88688 0.89513 0.76498 0.91965 0.91143 0.75386 0.75008 0.85767 0.88327 0.89513 0.89155 0.88144 0.88715 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.40 127.69 1.20 1.36 16 2 N -0.53 -7.95 5.55 -909.16 -5.05 -13.00 16 3 C 0.04 0.49 6.70 86.45 0.58 1.07 16 4 C -0.12 -1.70 6.27 31.48 0.20 -1.51 16 5 C 0.13 2.03 1.03 -9.58 -0.01 2.02 16 6 O -0.55 -9.35 13.12 -148.98 -1.95 -11.31 16 7 C 0.13 2.51 4.74 86.38 0.41 2.92 16 8 N -0.73 -15.24 5.15 -478.54 -2.47 -17.70 16 9 C 0.69 22.91 8.37 179.05 1.50 24.41 16 10 O -0.62 -27.17 13.96 -3.97 -0.06 -27.22 16 11 N -0.66 -21.38 5.30 -316.78 -1.68 -23.06 16 12 C 0.01 0.57 6.25 38.57 0.24 0.81 16 13 C -0.10 -4.47 9.90 22.13 0.22 -4.25 16 14 C -0.19 -9.80 8.74 22.48 0.20 -9.60 16 15 C 0.08 4.56 5.57 -21.28 -0.12 4.44 16 16 C -0.51 -27.85 8.94 23.39 0.21 -27.64 16 17 H 0.07 3.98 8.02 -2.91 -0.02 3.95 16 18 C 0.05 2.60 4.77 85.24 0.41 3.01 16 19 N -0.80 -40.63 11.78 21.82 0.26 -40.37 16 20 Si 0.97 37.62 29.66 68.60 2.03 39.65 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C -0.25 -13.10 9.74 22.48 0.22 -12.88 16 25 C -0.08 -3.78 8.59 22.14 0.19 -3.59 16 26 C 0.01 0.18 5.31 86.65 0.46 0.64 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.03 0.36 8.00 -2.39 -0.02 0.34 16 30 H 0.06 0.65 7.74 -2.38 -0.02 0.63 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.16 7.85 -2.39 -0.02 1.14 16 33 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.39 4.28 7.88 -74.05 -0.58 3.69 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.41 5.40 7.27 -92.71 -0.67 4.72 16 38 H 0.41 9.72 8.84 -92.71 -0.82 8.90 16 39 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 40 H 0.10 5.18 6.53 -2.91 -0.02 5.16 16 41 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 42 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.10 4.95 6.45 -2.91 -0.02 4.93 16 44 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 45 H 0.06 0.83 7.88 -2.39 -0.02 0.81 16 Total: -1.00 -71.00 367.88 -4.06 -75.06 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -1.04 Total: 36.75 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 5.90 Total: -18.80 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -8.94 Total: -94.13 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -2.01 Total: -38.53 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -71.00 -4.06 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358434427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.561 kcal (2) G-P(sol) polarization free energy of solvation -70.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds