Wall clock time and date at job start Fri Apr 10 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34599 * 119.47754 * 2 1 4 4 C 1.37997 * 120.46249 * 180.30461 * 3 2 1 5 5 C 1.47454 * 120.26203 * 179.71527 * 4 3 2 6 6 O 1.21603 * 120.00101 * 359.72116 * 5 4 3 7 7 N 1.34779 * 120.00089 * 179.72967 * 5 4 3 8 8 C 1.46499 * 120.00142 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47090 * 179.72069 * 8 7 5 10 10 H 1.09004 * 109.49869 * 54.99683 * 9 8 7 11 11 C 1.53044 * 109.49487 * 175.06394 * 9 8 7 12 12 C 1.53039 * 109.53615 * 181.31768 * 11 9 8 13 13 C 1.53196 * 109.31423 * 298.63334 * 12 11 9 14 14 N 1.46934 * 108.77517 * 54.63447 * 13 12 11 15 15 C 1.36935 * 120.62797 * 126.43706 * 14 13 12 16 16 H 1.07999 * 119.99407 * 207.67372 * 15 14 13 17 17 C 1.38807 * 120.00349 * 27.67044 * 15 14 13 18 18 N 1.31619 * 120.00078 * 17.35075 * 17 15 14 19 19 Si 1.86804 * 119.99991 * 197.35597 * 17 15 14 20 20 H 1.48493 * 109.47300 * 89.99824 * 19 17 15 21 21 H 1.48502 * 109.46715 * 209.99826 * 19 17 15 22 22 H 1.48503 * 109.46916 * 329.99827 * 19 17 15 23 23 C 1.46932 * 118.76471 * 306.41815 * 14 13 12 24 24 C 1.41604 * 119.47797 * 359.44031 * 4 3 2 25 25 C 1.35974 * 119.01302 * 0.27333 * 24 4 3 26 26 C 1.34543 * 119.47916 * 179.73798 * 2 1 3 27 27 O 1.21957 * 119.74867 * 359.95823 * 26 2 1 28 28 H 1.09003 * 109.46840 * 180.26296 * 1 2 3 29 29 H 1.09004 * 109.47132 * 300.25996 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.26171 * 1 2 3 31 31 H 1.08004 * 119.76953 * 0.02562 * 3 2 1 32 32 H 0.96999 * 119.99656 * 359.71142 * 7 5 4 33 33 H 1.09000 * 109.46568 * 299.72145 * 8 7 5 34 34 H 1.09000 * 109.47105 * 59.72021 * 8 7 5 35 35 H 1.08993 * 109.46101 * 301.33581 * 11 9 8 36 36 H 1.08994 * 109.46037 * 61.31077 * 11 9 8 37 37 H 1.08999 * 109.50328 * 58.58443 * 12 11 9 38 38 H 1.08993 * 109.49715 * 178.68417 * 12 11 9 39 39 H 1.08992 * 109.59033 * 174.42118 * 13 12 11 40 40 H 1.09002 * 109.58811 * 294.85531 * 13 12 11 41 41 H 0.97001 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.55751 * 293.78340 * 23 14 13 43 43 H 1.08999 * 109.61603 * 173.35590 * 23 14 13 44 44 H 1.07995 * 120.49025 * 180.29634 * 24 4 3 45 45 H 1.07990 * 120.24869 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1955 -0.0063 5 6 4.2282 2.4817 -0.0126 6 8 3.6069 3.5270 -0.0174 7 7 5.5758 2.4987 -0.0133 8 6 6.2922 3.7766 -0.0201 9 6 7.7999 3.5161 -0.0124 10 1 8.0612 2.8670 -0.8482 11 6 8.5484 4.8445 -0.1436 12 6 10.0559 4.5821 -0.1690 13 6 10.4768 3.9178 1.1457 14 7 9.6583 2.7149 1.3510 15 6 10.2481 1.5010 1.5825 16 1 9.7405 0.5911 1.2981 17 6 11.4982 1.4398 2.1826 18 7 11.9681 2.4835 2.8323 19 14 12.5138 -0.1239 2.0681 20 1 13.3723 -0.0690 0.8577 21 1 13.3685 -0.2485 3.2760 22 1 11.6077 -1.2972 1.9795 23 6 8.1950 2.8389 1.3037 24 6 4.2250 -0.0251 -0.0008 25 6 3.5345 -1.1964 0.0050 26 6 2.1271 -1.1712 0.0054 27 8 1.5031 -2.2191 0.0109 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8877 30 1 -0.3633 0.5098 -0.8923 31 1 1.5751 2.0999 0.0004 32 1 6.0714 1.6649 -0.0054 33 1 6.0251 4.3380 -0.9154 34 1 6.0183 4.3514 0.8645 35 1 8.2504 5.3395 -1.0678 36 1 8.3055 5.4835 0.7053 37 1 10.2965 3.9229 -1.0030 38 1 10.5876 5.5264 -0.2860 39 1 11.5292 3.6391 1.0937 40 1 10.3206 4.6113 1.9720 41 1 12.8419 2.4409 3.2514 42 1 7.8528 3.4442 2.1432 43 1 7.7420 1.8488 1.3557 44 1 5.3050 -0.0255 -0.0008 45 1 4.0618 -2.1388 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359403452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:56 Heat of formation + Delta-G solvation = -21.390341 kcal Electronic energy + Delta-G solvation = -26549.766058 eV Core-core repulsion = 22761.066961 eV Total energy + Delta-G solvation = -3788.699097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80761 -39.71384 -37.88842 -37.07557 -35.18301 -34.77767 -33.01214 -30.77854 -30.47838 -30.07968 -28.21153 -25.86411 -25.31479 -24.13139 -23.44056 -22.15856 -21.15808 -20.68265 -19.22063 -18.34831 -17.77273 -17.00051 -16.68363 -16.51213 -16.00926 -15.68010 -15.31240 -14.86237 -14.58115 -14.24269 -14.07212 -13.72410 -13.68041 -13.47987 -13.40573 -12.97524 -12.82818 -12.41370 -12.38188 -12.33941 -12.20003 -11.86677 -11.33482 -11.04574 -10.76075 -10.54417 -10.52656 -10.38596 -10.26497 -10.22419 -10.10277 -9.94285 -9.61614 -9.46605 -9.04156 -8.50249 -8.33454 -6.72272 -5.82849 -3.25861 0.43193 1.05220 2.12748 2.81056 3.19207 3.34855 3.41938 3.42980 3.46877 4.18957 4.29774 4.44540 4.48234 4.61714 4.71916 4.74354 4.92304 5.07426 5.17769 5.25638 5.39586 5.41709 5.56766 5.58850 5.61755 5.78113 5.78981 5.90846 5.95537 6.03012 6.18910 6.27974 6.33277 6.43217 6.54417 6.56572 6.66160 6.72738 6.81822 6.91599 7.36395 7.48784 7.57721 7.63756 7.74689 8.15665 8.40215 9.16625 9.80175 10.36630 11.25336 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003015 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.965020 B = 9285.853980 C =10945.901445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.493 5.493 3 C 0.206 3.794 4 C -0.248 4.248 5 C 0.575 3.425 6 O -0.553 6.553 7 N -0.717 5.717 8 C 0.128 3.872 9 C -0.119 4.119 10 H 0.073 0.927 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.168 3.832 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.154 3.846 24 C 0.004 3.996 25 C -0.242 4.242 26 C 0.515 3.485 27 O -0.545 6.545 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.402 0.598 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.049 0.951 44 H 0.142 0.858 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.279 0.216 -7.484 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.201 5.201 3 C 0.073 3.927 4 C -0.257 4.257 5 C 0.362 3.638 6 O -0.433 6.433 7 N -0.368 5.368 8 C 0.005 3.995 9 C -0.140 4.140 10 H 0.092 0.908 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.043 3.957 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.027 3.973 24 C -0.017 4.017 25 C -0.263 4.263 26 C 0.317 3.683 27 O -0.427 6.427 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.196 0.804 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.160 0.840 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.984 0.245 -7.371 20.366 hybrid contribution 0.972 -1.067 0.035 1.444 sum -18.012 -0.822 -7.337 19.466 Atomic orbital electron populations 1.22341 0.76527 1.06691 1.03805 1.45188 1.09913 1.06852 1.58138 1.22242 0.92978 0.89950 0.87526 1.19476 0.92480 0.94557 1.19143 1.17567 0.82273 0.87652 0.76287 1.90774 1.67518 1.33437 1.51525 1.45919 1.05753 1.10697 1.74425 1.21498 0.91654 0.84410 1.01960 1.21974 0.91377 0.98821 1.01783 0.90812 1.21335 0.96405 0.95588 1.00417 1.22172 0.94475 0.99671 1.01791 1.20810 0.97409 0.86880 0.90623 1.44045 0.98863 1.05840 1.82624 1.19165 1.01259 0.84783 1.33263 0.91684 1.25035 1.00014 0.97281 0.97224 1.70038 1.18960 1.30016 1.35504 0.86302 0.80375 0.83002 0.77146 1.21438 1.21775 1.20410 1.20900 0.86649 0.97290 0.92466 1.21573 1.00938 0.90963 0.88268 1.22017 0.92156 1.00337 1.11828 1.17323 0.89600 0.82614 0.78745 1.90932 1.69491 1.29965 1.52311 0.87516 0.89714 0.89746 0.80363 0.76178 0.91744 0.91339 0.93400 0.92440 0.92745 0.93166 0.89526 0.96437 0.93592 0.96305 0.93220 0.84031 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.26 10.55 59.85 0.63 0.89 16 2 N -0.49 -4.32 2.95 -126.73 -0.37 -4.70 16 3 C 0.21 1.73 9.92 -16.43 -0.16 1.57 16 4 C -0.25 -2.48 5.88 -104.95 -0.62 -3.10 16 5 C 0.58 7.10 7.76 -12.51 -0.10 7.00 16 6 O -0.55 -8.32 16.32 5.28 0.09 -8.24 16 7 N -0.72 -8.59 5.28 -61.38 -0.32 -8.91 16 8 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 9 C -0.12 -1.81 2.37 -90.50 -0.21 -2.03 16 10 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.10 -1.54 5.17 -26.69 -0.14 -1.68 16 12 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 13 C 0.17 3.86 5.31 -3.70 -0.02 3.84 16 14 N -0.59 -14.00 3.00 -172.31 -0.52 -14.51 16 15 C -0.26 -6.68 9.58 -15.06 -0.14 -6.82 16 16 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 19 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.15 2.92 5.60 -3.71 -0.02 2.90 16 24 C 0.00 0.04 9.57 -39.11 -0.37 -0.34 16 25 C -0.24 -2.48 9.97 -39.44 -0.39 -2.87 16 26 C 0.51 5.99 7.40 -15.41 -0.11 5.88 16 27 O -0.55 -8.03 16.33 4.96 0.08 -7.95 16 28 H 0.11 0.74 6.83 -51.93 -0.35 0.38 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.18 1.16 7.59 -52.48 -0.40 0.76 16 32 H 0.40 4.28 5.76 -40.82 -0.24 4.05 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 2.25 6.04 -51.93 -0.31 1.93 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.05 0.89 7.14 -51.93 -0.37 0.52 16 44 H 0.14 1.08 6.48 -52.49 -0.34 0.74 16 45 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -33.39 364.76 -8.53 -41.91 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.64 Total: 1.56 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.93 Total: 4.22 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.59 Total: -53.06 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.17 Total: -16.19 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.39 -8.53 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.524 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds