Wall clock time and date at job start Fri Apr 10 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34599 * 119.47754 * 2 1 4 4 C 1.37997 * 120.46249 * 180.30461 * 3 2 1 5 5 C 1.47454 * 120.26203 * 179.71527 * 4 3 2 6 6 O 1.21603 * 120.00101 * 359.72116 * 5 4 3 7 7 N 1.34779 * 120.00089 * 179.72967 * 5 4 3 8 8 C 1.46499 * 120.00142 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47090 * 179.72069 * 8 7 5 10 10 H 1.09004 * 109.49869 * 54.99683 * 9 8 7 11 11 C 1.53044 * 109.49487 * 175.06394 * 9 8 7 12 12 C 1.53039 * 109.53615 * 181.31768 * 11 9 8 13 13 C 1.53196 * 109.31423 * 298.63334 * 12 11 9 14 14 N 1.46934 * 108.77517 * 54.63447 * 13 12 11 15 15 C 1.36935 * 120.62797 * 126.43706 * 14 13 12 16 16 H 1.07999 * 119.99407 * 207.67372 * 15 14 13 17 17 C 1.38807 * 120.00349 * 27.67044 * 15 14 13 18 18 N 1.31619 * 120.00078 * 17.35075 * 17 15 14 19 19 Si 1.86804 * 119.99991 * 197.35597 * 17 15 14 20 20 H 1.48493 * 109.47300 * 89.99824 * 19 17 15 21 21 H 1.48502 * 109.46715 * 209.99826 * 19 17 15 22 22 H 1.48503 * 109.46916 * 329.99827 * 19 17 15 23 23 C 1.46932 * 118.76471 * 306.41815 * 14 13 12 24 24 C 1.41604 * 119.47797 * 359.44031 * 4 3 2 25 25 C 1.35974 * 119.01302 * 0.27333 * 24 4 3 26 26 C 1.34543 * 119.47916 * 179.73798 * 2 1 3 27 27 O 1.21957 * 119.74867 * 359.95823 * 26 2 1 28 28 H 1.09003 * 109.46840 * 180.26296 * 1 2 3 29 29 H 1.09004 * 109.47132 * 300.25996 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.26171 * 1 2 3 31 31 H 1.08004 * 119.76953 * 0.02562 * 3 2 1 32 32 H 0.96999 * 119.99656 * 359.71142 * 7 5 4 33 33 H 1.09000 * 109.46568 * 299.72145 * 8 7 5 34 34 H 1.09000 * 109.47105 * 59.72021 * 8 7 5 35 35 H 1.08993 * 109.46101 * 301.33581 * 11 9 8 36 36 H 1.08994 * 109.46037 * 61.31077 * 11 9 8 37 37 H 1.08999 * 109.50328 * 58.58443 * 12 11 9 38 38 H 1.08993 * 109.49715 * 178.68417 * 12 11 9 39 39 H 1.08992 * 109.59033 * 174.42118 * 13 12 11 40 40 H 1.09002 * 109.58811 * 294.85531 * 13 12 11 41 41 H 0.97001 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.55751 * 293.78340 * 23 14 13 43 43 H 1.08999 * 109.61603 * 173.35590 * 23 14 13 44 44 H 1.07995 * 120.49025 * 180.29634 * 24 4 3 45 45 H 1.07990 * 120.24869 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1955 -0.0063 5 6 4.2282 2.4817 -0.0126 6 8 3.6069 3.5270 -0.0174 7 7 5.5758 2.4987 -0.0133 8 6 6.2922 3.7766 -0.0201 9 6 7.7999 3.5161 -0.0124 10 1 8.0612 2.8670 -0.8482 11 6 8.5484 4.8445 -0.1436 12 6 10.0559 4.5821 -0.1690 13 6 10.4768 3.9178 1.1457 14 7 9.6583 2.7149 1.3510 15 6 10.2481 1.5010 1.5825 16 1 9.7405 0.5911 1.2981 17 6 11.4982 1.4398 2.1826 18 7 11.9681 2.4835 2.8323 19 14 12.5138 -0.1239 2.0681 20 1 13.3723 -0.0690 0.8577 21 1 13.3685 -0.2485 3.2760 22 1 11.6077 -1.2972 1.9795 23 6 8.1950 2.8389 1.3037 24 6 4.2250 -0.0251 -0.0008 25 6 3.5345 -1.1964 0.0050 26 6 2.1271 -1.1712 0.0054 27 8 1.5031 -2.2191 0.0109 28 1 -0.3633 -1.0277 0.0047 29 1 -0.3633 0.5179 0.8877 30 1 -0.3633 0.5098 -0.8923 31 1 1.5751 2.0999 0.0004 32 1 6.0714 1.6649 -0.0054 33 1 6.0251 4.3380 -0.9154 34 1 6.0183 4.3514 0.8645 35 1 8.2504 5.3395 -1.0678 36 1 8.3055 5.4835 0.7053 37 1 10.2965 3.9229 -1.0030 38 1 10.5876 5.5264 -0.2860 39 1 11.5292 3.6391 1.0937 40 1 10.3206 4.6113 1.9720 41 1 12.8419 2.4409 3.2514 42 1 7.8528 3.4442 2.1432 43 1 7.7420 1.8488 1.3557 44 1 5.3050 -0.0255 -0.0008 45 1 4.0618 -2.1388 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359403452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:55 Heat of formation + Delta-G solvation = -42.881159 kcal Electronic energy + Delta-G solvation = -26550.697969 eV Core-core repulsion = 22761.066961 eV Total energy + Delta-G solvation = -3789.631009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59223 -40.72742 -39.31482 -37.99896 -36.26833 -35.77775 -34.57232 -32.27246 -32.01702 -31.06361 -28.84554 -27.25220 -26.91516 -25.06075 -24.21735 -23.76618 -22.56446 -21.68041 -20.65904 -19.24613 -18.65547 -18.49267 -17.81246 -17.25085 -16.88422 -16.71371 -16.68364 -16.37526 -15.72397 -15.36295 -15.31461 -15.02150 -14.92396 -14.47692 -14.35920 -14.21866 -13.97407 -13.70080 -13.57625 -13.50218 -13.11291 -12.98474 -12.84376 -12.67249 -12.47340 -12.23311 -11.93060 -11.77775 -11.53523 -11.35315 -11.25151 -11.21853 -11.07529 -10.95746 -10.50549 -10.06045 -9.14609 -8.65118 -7.84204 -5.29330 -0.28057 0.21158 1.43569 1.48983 1.50690 1.58580 1.90597 2.26408 2.53287 2.65025 3.30668 3.52168 3.60642 3.64287 3.77108 3.81136 4.02660 4.07308 4.08617 4.11895 4.37819 4.39872 4.45846 4.62775 4.66403 4.74820 4.81797 4.87265 4.90462 4.94067 4.98402 5.03967 5.05313 5.15612 5.26208 5.31213 5.38512 5.43812 5.52717 5.61348 5.70635 5.80062 5.82320 6.41668 6.55279 6.75230 7.17944 7.21095 7.90043 8.41384 9.21923 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003015 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.965020 B = 9285.853980 C =10945.901445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.487 5.487 3 C 0.226 3.774 4 C -0.263 4.263 5 C 0.579 3.421 6 O -0.580 6.580 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.102 4.102 10 H 0.078 0.922 11 C -0.097 4.097 12 C -0.130 4.130 13 C 0.172 3.828 14 N -0.610 5.610 15 C -0.258 4.258 16 H 0.073 0.927 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.963 3.037 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.265 1.265 23 C 0.151 3.849 24 C 0.018 3.982 25 C -0.260 4.260 26 C 0.504 3.496 27 O -0.587 6.587 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.204 0.796 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.050 0.950 40 H -0.008 1.008 41 H 0.248 0.752 42 H 0.006 0.994 43 H 0.058 0.942 44 H 0.158 0.842 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.897 0.604 -8.988 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.193 5.193 3 C 0.091 3.909 4 C -0.271 4.271 5 C 0.368 3.632 6 O -0.462 6.462 7 N -0.366 5.366 8 C 0.015 3.985 9 C -0.122 4.122 10 H 0.096 0.904 11 C -0.135 4.135 12 C -0.170 4.170 13 C 0.046 3.954 14 N -0.333 5.333 15 C -0.388 4.388 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.792 3.208 20 H -0.214 1.214 21 H -0.227 1.227 22 H -0.190 1.190 23 C 0.026 3.974 24 C -0.003 4.003 25 C -0.282 4.282 26 C 0.308 3.692 27 O -0.473 6.473 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.221 0.779 32 H 0.246 0.754 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.010 0.990 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.175 0.825 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.635 0.633 -8.896 22.480 hybrid contribution 1.400 -1.118 0.531 1.869 sum -19.235 -0.485 -8.365 20.981 Atomic orbital electron populations 1.22628 0.74453 1.06459 1.06381 1.45279 1.11289 1.06220 1.56511 1.22571 0.92728 0.90388 0.85180 1.19362 0.93154 0.93689 1.20871 1.17740 0.82114 0.87919 0.75443 1.90764 1.67979 1.34518 1.52963 1.45865 1.05871 1.10616 1.74279 1.21295 0.89978 0.84978 1.02225 1.21735 0.92814 0.98402 0.99272 0.90364 1.21333 0.94227 0.95849 1.02087 1.21998 0.96747 0.99841 0.98364 1.20640 0.95663 0.86608 0.92493 1.44322 1.00879 1.05272 1.82785 1.19568 1.01362 0.86089 1.31796 0.90904 1.25773 1.01362 1.00012 0.97668 1.70198 1.18977 1.32023 1.37149 0.85319 0.78819 0.80234 0.76411 1.21388 1.22725 1.18974 1.21056 0.83999 0.98171 0.94206 1.21677 1.01690 0.90268 0.86678 1.22037 0.91838 1.00969 1.13348 1.17572 0.90148 0.82861 0.78583 1.90907 1.70305 1.31435 1.54616 0.89138 0.87267 0.87073 0.77907 0.75374 0.90452 0.92134 0.90028 0.92629 0.92843 0.91433 0.93175 0.99010 0.94308 0.97586 0.92314 0.82455 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.55 127.77 1.35 1.71 16 2 N -0.49 -7.60 2.95 -673.09 -1.99 -9.59 16 3 C 0.23 3.18 9.92 84.21 0.84 4.01 16 4 C -0.26 -4.63 5.88 -20.08 -0.12 -4.74 16 5 C 0.58 12.80 7.76 86.67 0.67 13.47 16 6 O -0.58 -15.97 16.32 -4.04 -0.07 -16.04 16 7 N -0.72 -15.23 5.28 -466.35 -2.46 -17.69 16 8 C 0.14 3.29 5.07 86.38 0.44 3.73 16 9 C -0.10 -2.85 2.37 -10.72 -0.03 -2.88 16 10 H 0.08 2.18 8.14 -2.38 -0.02 2.17 16 11 C -0.10 -2.74 5.17 30.62 0.16 -2.58 16 12 C -0.13 -4.52 6.08 30.67 0.19 -4.34 16 13 C 0.17 8.00 5.31 86.36 0.46 8.46 16 14 N -0.61 -28.85 3.00 -699.06 -2.09 -30.95 16 15 C -0.26 -13.48 9.58 84.03 0.81 -12.68 16 16 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 17 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 18 N -0.94 -54.83 11.19 21.65 0.24 -54.59 16 19 Si 0.96 43.77 29.59 68.60 2.03 45.80 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 C 0.15 5.58 5.60 86.36 0.48 6.07 16 24 C 0.02 0.31 9.57 22.57 0.22 0.52 16 25 C -0.26 -5.12 9.97 22.36 0.22 -4.89 16 26 C 0.50 11.41 7.40 84.89 0.63 12.03 16 27 O -0.59 -17.50 16.33 -5.17 -0.08 -17.58 16 28 H 0.09 1.18 6.83 -2.39 -0.02 1.16 16 29 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.20 1.88 7.59 -2.91 -0.02 1.86 16 32 H 0.41 7.60 5.76 -92.71 -0.53 7.06 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.69 6.04 -2.39 -0.01 2.67 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.01 0.24 8.14 -2.38 -0.02 0.23 16 43 H 0.06 2.02 7.14 -2.39 -0.02 2.00 16 44 H 0.16 2.04 6.48 -2.91 -0.02 2.02 16 45 H 0.16 2.91 8.06 -2.92 -0.02 2.89 16 Total: -1.00 -74.03 364.76 2.77 -71.26 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.47 Total: 13.94 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.73 Total: 15.43 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -6.30 Total: -112.81 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.15 Total: -33.62 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -74.03 2.77 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359403452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.381 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds