Wall clock time and date at job start Fri Apr 10 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35430 * 119.47164 * 2 1 4 4 C 1.35766 * 121.23356 * 179.97438 * 3 2 1 5 5 C 1.39471 * 120.12565 * 359.97438 * 4 3 2 6 6 C 1.39335 * 118.96004 * 0.02562 * 5 4 3 7 7 C 1.47084 * 120.58415 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00331 * 354.00969 * 7 6 5 9 9 N 1.34780 * 120.00133 * 174.00848 * 7 6 5 10 10 C 1.46495 * 119.99865 * 184.82672 * 9 7 6 11 11 C 1.53008 * 109.46710 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.49564 * 305.05945 * 11 10 9 13 13 C 1.53040 * 109.49463 * 185.00251 * 11 10 9 14 14 C 1.53046 * 109.53740 * 178.64952 * 13 11 10 15 15 C 1.53195 * 109.31236 * 61.36173 * 14 13 11 16 16 N 1.46929 * 108.77531 * 305.36899 * 15 14 13 17 17 C 1.36938 * 120.62823 * 233.58507 * 16 15 14 18 18 H 1.07997 * 119.99997 * 150.70244 * 17 16 15 19 19 C 1.38817 * 120.00005 * 330.70392 * 17 16 15 20 20 N 1.31618 * 119.99836 * 346.32335 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 166.32601 * 19 17 16 22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47102 * 119.99673 * 21 19 17 24 24 H 1.48498 * 109.47055 * 239.99990 * 21 19 17 25 25 C 1.46920 * 118.74113 * 53.85619 * 16 15 14 26 26 C 1.34660 * 119.47215 * 180.27061 * 2 1 3 27 27 O 1.21881 * 120.10249 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47225 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47218 * 120.00205 * 1 2 3 30 30 H 1.09000 * 109.47059 * 240.00233 * 1 2 3 31 31 H 1.08006 * 119.38488 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.93635 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.51683 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99725 * 4.82916 * 9 7 6 35 35 H 1.08994 * 109.47410 * 60.00268 * 10 9 7 36 36 H 1.08994 * 109.47311 * 299.99614 * 10 9 7 37 37 H 1.08996 * 109.46399 * 58.62493 * 13 11 10 38 38 H 1.08997 * 109.44754 * 298.65898 * 13 11 10 39 39 H 1.08997 * 109.49684 * 301.41351 * 14 13 11 40 40 H 1.08998 * 109.52445 * 181.32894 * 14 13 11 41 41 H 1.08999 * 109.58677 * 185.58086 * 15 14 13 42 42 H 1.09001 * 109.70635 * 65.22026 * 15 14 13 43 43 H 0.97006 * 120.00012 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.58527 * 65.92836 * 25 16 15 45 45 H 1.08997 * 109.58950 * 186.34963 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2208 0.0005 5 6 4.2251 0.0366 0.0016 6 6 3.5463 -1.1803 0.0016 7 6 4.2876 -2.4507 0.0022 8 8 5.4992 -2.4481 -0.1073 9 7 3.6246 -3.6178 0.1240 10 6 4.3686 -4.8752 0.2309 11 6 3.3851 -6.0405 0.3573 12 1 2.7129 -5.8598 1.1961 13 6 4.1596 -7.3390 0.5940 14 6 3.1754 -8.5001 0.7541 15 6 2.3579 -8.6523 -0.5325 16 7 1.7253 -7.3637 -0.8461 17 6 0.3742 -7.2819 -1.0532 18 1 -0.1540 -6.3698 -0.8176 19 6 -0.3167 -8.3713 -1.5659 20 7 0.3433 -9.3760 -2.1020 21 14 -2.1829 -8.4113 -1.4951 22 1 -2.6804 -7.1707 -0.8479 23 1 -2.7287 -8.5045 -2.8729 24 1 -2.6232 -9.5907 -0.7074 25 6 2.5708 -6.1658 -0.9393 26 6 2.1275 -1.1723 -0.0055 27 8 1.5103 -2.2233 -0.0110 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5727 2.1034 -0.0004 32 1 3.9982 2.1728 0.0001 33 1 5.3048 0.0624 0.0024 34 1 2.6548 -3.6251 0.1408 35 1 5.0104 -4.8439 1.1113 36 1 4.9809 -5.0120 -0.6603 37 1 4.7596 -7.2442 1.4990 38 1 4.8134 -7.5319 -0.2565 39 1 2.5051 -8.2962 1.5890 40 1 3.7263 -9.4208 0.9462 41 1 1.5890 -9.4115 -0.3892 42 1 3.0136 -8.9464 -1.3520 43 1 -0.1395 -10.1372 -2.4606 44 1 3.2456 -6.2601 -1.7901 45 1 1.9425 -5.2839 -1.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359420720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:04 Heat of formation + Delta-G solvation = -15.483156 kcal Electronic energy + Delta-G solvation = -27206.429471 eV Core-core repulsion = 23417.986529 eV Total energy + Delta-G solvation = -3788.442942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74347 -39.22055 -37.60432 -37.39114 -34.78787 -34.47068 -32.79361 -30.71473 -30.30247 -29.88682 -28.04930 -26.02512 -25.16912 -24.11856 -22.96010 -21.98093 -20.95609 -20.52303 -19.02838 -17.97110 -17.72602 -17.21043 -16.52925 -16.47520 -15.75895 -15.33408 -15.01820 -14.78277 -14.70340 -14.09402 -13.87868 -13.56805 -13.32949 -13.29027 -13.14297 -12.83317 -12.63638 -12.50776 -12.23577 -12.15645 -12.02841 -12.00632 -11.15989 -10.90987 -10.65387 -10.36729 -10.33110 -10.22888 -10.10027 -10.05293 -9.87113 -9.75627 -9.41987 -9.28637 -8.65783 -8.38372 -8.29874 -6.53306 -5.68677 -3.13345 0.16145 1.50476 2.17093 2.75384 3.41870 3.48904 3.52047 3.57910 3.68653 4.07849 4.16416 4.56427 4.61663 4.67760 4.85873 4.91070 4.96035 5.25845 5.30334 5.43915 5.47283 5.58365 5.61054 5.66078 5.75709 5.84729 5.97723 6.05975 6.13050 6.17483 6.41218 6.48979 6.51786 6.57198 6.74320 6.78240 6.88632 6.97288 7.00528 7.13696 7.52268 7.59414 7.80222 7.89690 8.04959 8.56719 8.60692 9.32385 9.95038 10.52911 11.39354 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003719 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.962607 B = 7527.110413 C = 9330.999055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.494 5.494 3 C 0.157 3.843 4 C -0.243 4.243 5 C 0.054 3.946 6 C -0.269 4.269 7 C 0.571 3.429 8 O -0.560 6.560 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.116 4.116 12 H 0.072 0.928 13 C -0.099 4.099 14 C -0.141 4.141 15 C 0.169 3.831 16 N -0.592 5.592 17 C -0.246 4.246 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.906 5.906 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.154 3.846 26 C 0.524 3.476 27 O -0.527 6.527 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 23.514 6.361 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.202 5.202 3 C 0.027 3.973 4 C -0.266 4.266 5 C 0.031 3.969 6 C -0.276 4.276 7 C 0.358 3.642 8 O -0.442 6.442 9 N -0.369 5.369 10 C 0.001 3.999 11 C -0.137 4.137 12 H 0.090 0.910 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.376 4.376 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.027 3.973 26 C 0.326 3.674 27 O -0.408 6.408 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.344 22.611 6.217 23.849 hybrid contribution -1.383 0.087 -0.040 1.386 sum 2.962 22.698 6.177 23.709 Atomic orbital electron populations 1.22285 0.76285 1.04156 1.05519 1.45409 1.09785 1.06697 1.58302 1.22260 0.94256 0.89400 0.91414 1.20682 0.92323 0.99728 1.13836 1.22012 1.01671 0.90283 0.82927 1.21107 0.92152 0.95883 1.18465 1.17410 0.86596 0.83250 0.76924 1.90753 1.13541 1.87688 1.52186 1.46625 1.13051 1.05424 1.71810 1.21445 0.94539 0.82599 1.01303 1.21991 0.96933 0.93056 1.01688 0.90998 1.21345 0.97470 0.94745 1.00165 1.22175 0.98000 0.96217 1.01675 1.20811 0.95149 0.89128 0.90604 1.44053 1.03642 1.02721 1.80993 1.19268 0.82871 1.00037 1.35425 0.91707 1.25087 0.97944 0.98565 0.98188 1.70022 1.33904 1.09382 1.41767 0.86215 0.85879 0.77473 0.77202 1.20291 1.21783 1.21648 1.20994 0.92819 0.91130 0.92341 1.17092 0.88270 0.82963 0.79108 1.90732 1.68815 1.28840 1.52396 0.89131 0.89343 0.89469 0.81499 0.82891 0.83288 0.73542 0.92245 0.91709 0.93539 0.92518 0.92836 0.93283 0.89426 0.96528 0.93811 0.96464 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.04 59.85 0.60 0.96 16 2 N -0.49 -4.22 2.98 -126.76 -0.38 -4.60 16 3 C 0.16 0.78 10.28 -16.85 -0.17 0.60 16 4 C -0.24 -1.38 9.99 -40.01 -0.40 -1.78 16 5 C 0.05 0.52 9.69 -38.71 -0.38 0.15 16 6 C -0.27 -3.67 5.92 -104.51 -0.62 -4.29 16 7 C 0.57 9.86 7.73 -12.67 -0.10 9.77 16 8 O -0.56 -10.73 16.41 5.23 0.09 -10.65 16 9 N -0.71 -12.71 5.24 -61.49 -0.32 -13.03 16 10 C 0.13 2.22 5.07 -4.04 -0.02 2.20 16 11 C -0.12 -2.23 2.38 -90.27 -0.22 -2.45 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.10 -1.81 5.17 -26.69 -0.14 -1.95 16 14 C -0.14 -2.88 6.08 -26.61 -0.16 -3.04 16 15 C 0.17 4.25 5.28 -3.71 -0.02 4.23 16 16 N -0.59 -15.74 2.99 -172.06 -0.51 -16.26 16 17 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 18 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 19 C 0.00 0.00 4.99 -17.43 -0.09 -0.08 16 20 N -0.91 -27.17 11.07 55.49 0.61 -26.56 16 21 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.15 3.54 5.63 -3.49 -0.02 3.52 16 26 C 0.52 7.03 7.44 -14.92 -0.11 6.91 16 27 O -0.53 -8.95 13.71 5.03 0.07 -8.88 16 28 H 0.09 0.17 7.70 -51.93 -0.40 -0.23 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.17 0.05 7.79 -52.48 -0.41 -0.36 16 32 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 33 H 0.15 1.34 7.71 -52.49 -0.40 0.93 16 34 H 0.42 7.84 4.33 -40.82 -0.18 7.66 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 1.27 7.16 -51.93 -0.37 0.90 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -36.73 363.09 -8.68 -45.41 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.70 Total: 4.20 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.98 Total: 7.51 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.60 Total: -60.45 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.15 Total: -19.53 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.73 -8.68 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.923 kcal (2) G-P(sol) polarization free energy of solvation -36.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds