Wall clock time and date at job start Fri Apr 10 2020 18:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35430 * 119.47164 * 2 1 4 4 C 1.35766 * 121.23356 * 179.97438 * 3 2 1 5 5 C 1.39471 * 120.12565 * 359.97438 * 4 3 2 6 6 C 1.39335 * 118.96004 * 0.02562 * 5 4 3 7 7 C 1.47084 * 120.58415 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00331 * 354.00969 * 7 6 5 9 9 N 1.34780 * 120.00133 * 174.00848 * 7 6 5 10 10 C 1.46495 * 119.99865 * 184.82672 * 9 7 6 11 11 C 1.53008 * 109.46710 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.49564 * 305.05945 * 11 10 9 13 13 C 1.53040 * 109.49463 * 185.00251 * 11 10 9 14 14 C 1.53046 * 109.53740 * 178.64952 * 13 11 10 15 15 C 1.53195 * 109.31236 * 61.36173 * 14 13 11 16 16 N 1.46929 * 108.77531 * 305.36899 * 15 14 13 17 17 C 1.36938 * 120.62823 * 233.58507 * 16 15 14 18 18 H 1.07997 * 119.99997 * 150.70244 * 17 16 15 19 19 C 1.38817 * 120.00005 * 330.70392 * 17 16 15 20 20 N 1.31618 * 119.99836 * 346.32335 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 166.32601 * 19 17 16 22 22 H 1.48504 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47102 * 119.99673 * 21 19 17 24 24 H 1.48498 * 109.47055 * 239.99990 * 21 19 17 25 25 C 1.46920 * 118.74113 * 53.85619 * 16 15 14 26 26 C 1.34660 * 119.47215 * 180.27061 * 2 1 3 27 27 O 1.21881 * 120.10249 * 0.02562 * 26 2 1 28 28 H 1.09005 * 109.47225 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47218 * 120.00205 * 1 2 3 30 30 H 1.09000 * 109.47059 * 240.00233 * 1 2 3 31 31 H 1.08006 * 119.38488 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.93635 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.51683 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99725 * 4.82916 * 9 7 6 35 35 H 1.08994 * 109.47410 * 60.00268 * 10 9 7 36 36 H 1.08994 * 109.47311 * 299.99614 * 10 9 7 37 37 H 1.08996 * 109.46399 * 58.62493 * 13 11 10 38 38 H 1.08997 * 109.44754 * 298.65898 * 13 11 10 39 39 H 1.08997 * 109.49684 * 301.41351 * 14 13 11 40 40 H 1.08998 * 109.52445 * 181.32894 * 14 13 11 41 41 H 1.08999 * 109.58677 * 185.58086 * 15 14 13 42 42 H 1.09001 * 109.70635 * 65.22026 * 15 14 13 43 43 H 0.97006 * 120.00012 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.58527 * 65.92836 * 25 16 15 45 45 H 1.08997 * 109.58950 * 186.34963 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2208 0.0005 5 6 4.2251 0.0366 0.0016 6 6 3.5463 -1.1803 0.0016 7 6 4.2876 -2.4507 0.0022 8 8 5.4992 -2.4481 -0.1073 9 7 3.6246 -3.6178 0.1240 10 6 4.3686 -4.8752 0.2309 11 6 3.3851 -6.0405 0.3573 12 1 2.7129 -5.8598 1.1961 13 6 4.1596 -7.3390 0.5940 14 6 3.1754 -8.5001 0.7541 15 6 2.3579 -8.6523 -0.5325 16 7 1.7253 -7.3637 -0.8461 17 6 0.3742 -7.2819 -1.0532 18 1 -0.1540 -6.3698 -0.8176 19 6 -0.3167 -8.3713 -1.5659 20 7 0.3433 -9.3760 -2.1020 21 14 -2.1829 -8.4113 -1.4951 22 1 -2.6804 -7.1707 -0.8479 23 1 -2.7287 -8.5045 -2.8729 24 1 -2.6232 -9.5907 -0.7074 25 6 2.5708 -6.1658 -0.9393 26 6 2.1275 -1.1723 -0.0055 27 8 1.5103 -2.2233 -0.0110 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5727 2.1034 -0.0004 32 1 3.9982 2.1728 0.0001 33 1 5.3048 0.0624 0.0024 34 1 2.6548 -3.6251 0.1408 35 1 5.0104 -4.8439 1.1113 36 1 4.9809 -5.0120 -0.6603 37 1 4.7596 -7.2442 1.4990 38 1 4.8134 -7.5319 -0.2565 39 1 2.5051 -8.2962 1.5890 40 1 3.7263 -9.4208 0.9462 41 1 1.5890 -9.4115 -0.3892 42 1 3.0136 -8.9464 -1.3520 43 1 -0.1395 -10.1372 -2.4606 44 1 3.2456 -6.2601 -1.7901 45 1 1.9425 -5.2839 -1.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359420720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:03 Heat of formation + Delta-G solvation = -41.437658 kcal Electronic energy + Delta-G solvation = -27207.554942 eV Core-core repulsion = 23417.986529 eV Total energy + Delta-G solvation = -3789.568414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54623 -40.50942 -39.30490 -38.29758 -36.19799 -35.45356 -34.60692 -32.33929 -32.03671 -31.01580 -28.63260 -27.43474 -27.16092 -25.21842 -23.87172 -23.68099 -22.56468 -21.83083 -20.74171 -19.03705 -18.66868 -18.48494 -17.92831 -17.28061 -16.91150 -16.72160 -16.47712 -16.39658 -15.77458 -15.45008 -15.35056 -15.07484 -15.03079 -14.55147 -14.22803 -14.05406 -13.84555 -13.62164 -13.55734 -13.43435 -13.09133 -13.03896 -12.89358 -12.84137 -12.55730 -12.28986 -11.97817 -11.88197 -11.62806 -11.44412 -11.20055 -11.15547 -11.09520 -10.94248 -10.57930 -10.02013 -9.09754 -8.68769 -7.89136 -5.38639 -0.54516 0.78104 1.42793 1.43366 1.51241 1.55663 1.73235 2.41288 2.48068 2.71933 3.24596 3.51148 3.56669 3.77231 3.91942 3.94737 3.95336 4.01618 4.05498 4.18277 4.34266 4.37972 4.39925 4.51584 4.57247 4.70047 4.80217 4.82190 4.84464 4.87825 4.96163 4.99031 5.05919 5.20727 5.23428 5.28901 5.36008 5.48691 5.52825 5.58215 5.63765 5.76422 5.89272 6.37391 6.56967 6.87625 7.12635 7.29785 7.81898 8.35112 9.16593 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003719 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.962607 B = 7527.110413 C = 9330.999055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.490 5.490 3 C 0.187 3.813 4 C -0.243 4.243 5 C 0.077 3.923 6 C -0.331 4.331 7 C 0.565 3.435 8 O -0.593 6.593 9 N -0.720 5.720 10 C 0.133 3.867 11 C -0.099 4.099 12 H 0.064 0.936 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.265 4.265 18 H 0.058 0.942 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.284 1.284 25 C 0.157 3.843 26 C 0.512 3.488 27 O -0.583 6.583 28 H 0.148 0.852 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.200 0.800 33 H 0.151 0.849 34 H 0.413 0.587 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.056 0.944 42 H -0.005 1.005 43 H 0.251 0.749 44 H 0.005 0.995 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 27.452 7.565 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.196 5.196 3 C 0.057 3.943 4 C -0.264 4.264 5 C 0.053 3.947 6 C -0.338 4.338 7 C 0.355 3.645 8 O -0.478 6.478 9 N -0.380 5.380 10 C 0.009 3.991 11 C -0.120 4.120 12 H 0.083 0.917 13 C -0.133 4.133 14 C -0.169 4.169 15 C 0.048 3.952 16 N -0.333 5.333 17 C -0.396 4.396 18 H 0.076 0.924 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.032 3.968 26 C 0.316 3.684 27 O -0.469 6.469 28 H 0.166 0.834 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.250 0.750 32 H 0.217 0.783 33 H 0.169 0.831 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.013 0.987 43 H 0.060 0.940 44 H 0.023 0.977 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.938 26.605 7.434 27.904 hybrid contribution -1.269 -0.884 -0.465 1.615 sum 2.668 25.721 6.969 26.782 Atomic orbital electron populations 1.22538 0.74648 1.07385 1.04122 1.45513 1.10983 1.06560 1.56524 1.23412 0.94654 0.89831 0.86413 1.21226 0.92706 0.99726 1.12751 1.22323 1.02156 0.90388 0.79850 1.20810 0.92558 0.95398 1.24997 1.18019 0.86540 0.84253 0.75679 1.90699 1.14709 1.88318 1.54026 1.46758 1.12879 1.05881 1.72461 1.21306 0.93989 0.82313 1.01494 1.21760 0.96717 0.94659 0.98827 0.91712 1.21340 0.97026 0.92853 1.02036 1.22014 0.97936 0.98499 0.98440 1.20681 0.94339 0.87847 0.92364 1.44308 1.03540 1.03991 1.81443 1.19509 0.84269 1.00105 1.35675 0.92432 1.25881 1.02606 0.98114 0.97867 1.70183 1.35611 1.09829 1.42488 0.85148 0.80113 0.77721 0.77127 1.19384 1.21523 1.21081 1.20996 0.92352 0.89367 0.94128 1.17155 0.88336 0.83781 0.79120 1.90675 1.69665 1.31008 1.55566 0.83415 0.91138 0.90723 0.74978 0.78314 0.83136 0.74064 0.90780 0.92578 0.89852 0.92299 0.93090 0.90568 0.92512 0.98681 0.93969 0.97664 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.04 127.77 1.28 1.80 16 2 N -0.49 -7.20 2.98 -673.17 -2.00 -9.20 16 3 C 0.19 0.81 10.28 83.56 0.86 1.67 16 4 C -0.24 -1.57 9.99 21.99 0.22 -1.35 16 5 C 0.08 1.35 9.69 22.83 0.22 1.57 16 6 C -0.33 -9.26 5.92 -19.79 -0.12 -9.38 16 7 C 0.57 20.66 7.73 86.56 0.67 21.33 16 8 O -0.59 -23.76 16.41 -4.19 -0.07 -23.83 16 9 N -0.72 -27.56 5.24 -466.70 -2.45 -30.00 16 10 C 0.13 4.89 5.07 86.38 0.44 5.33 16 11 C -0.10 -3.93 2.38 -10.57 -0.03 -3.95 16 12 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.09 -3.39 5.17 30.62 0.16 -3.23 16 14 C -0.13 -5.26 6.08 30.67 0.19 -5.07 16 15 C 0.17 9.06 5.28 86.36 0.46 9.51 16 16 N -0.61 -33.97 2.99 -698.26 -2.08 -36.06 16 17 C -0.27 -15.96 9.59 84.03 0.81 -15.15 16 18 H 0.06 3.47 7.87 -2.91 -0.02 3.44 16 19 C -0.05 -2.93 4.99 84.86 0.42 -2.51 16 20 N -0.94 -58.04 11.07 21.65 0.24 -57.80 16 21 Si 0.97 47.25 29.58 68.60 2.03 49.28 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 25 C 0.16 7.67 5.63 86.51 0.49 8.16 16 26 C 0.51 14.06 7.44 85.16 0.63 14.69 16 27 O -0.58 -21.37 13.71 -4.93 -0.07 -21.43 16 28 H 0.15 -0.30 7.70 -2.38 -0.02 -0.31 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.23 -1.96 7.79 -2.91 -0.02 -1.98 16 32 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 33 H 0.15 2.53 7.71 -2.91 -0.02 2.51 16 34 H 0.41 16.83 4.33 -92.75 -0.40 16.43 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 42 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 44 H 0.01 0.27 8.14 -2.38 -0.02 0.26 16 45 H 0.04 1.97 7.16 -2.39 -0.02 1.96 16 Total: -1.00 -89.04 363.09 2.89 -86.15 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.59 Total: 19.48 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.70 Total: 23.41 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -6.30 Total: -133.06 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.14 Total: -45.27 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -89.04 2.89 -86.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.717 kcal (2) G-P(sol) polarization free energy of solvation -89.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds