Wall clock time and date at job start Fri Apr 10 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35696 * 119.44193 * 2 1 4 4 C 1.35266 * 121.00195 * 180.02562 * 3 2 1 5 5 C 1.41151 * 119.86759 * 0.02562 * 4 3 2 6 6 C 1.48461 * 120.53782 * 179.97438 * 5 4 3 7 7 O 1.21481 * 119.99534 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00118 * 0.02615 * 6 5 4 9 9 C 1.46504 * 119.99806 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.49653 * 54.93099 * 10 9 8 12 12 C 1.53041 * 109.49874 * 174.99903 * 10 9 8 13 13 C 1.53044 * 109.53521 * 181.31674 * 12 10 9 14 14 C 1.53190 * 109.31476 * 298.63373 * 13 12 10 15 15 N 1.46929 * 108.77451 * 54.63720 * 14 13 12 16 16 C 1.36929 * 120.62981 * 126.40965 * 15 14 13 17 17 H 1.08003 * 120.00601 * 207.66879 * 16 15 14 18 18 C 1.38813 * 120.00029 * 27.67759 * 16 15 14 19 19 N 1.31620 * 120.00209 * 17.35504 * 18 16 15 20 20 Si 1.86803 * 120.00079 * 197.36411 * 18 16 15 21 21 H 1.48501 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47039 * 119.99322 * 20 18 16 23 23 H 1.48491 * 109.47300 * 239.99496 * 20 18 16 24 24 C 1.46929 * 118.73840 * 306.39219 * 15 14 13 25 25 C 1.38296 * 118.92298 * 0.02562 * 5 4 3 26 26 C 1.34596 * 119.43863 * 180.30534 * 2 1 3 27 27 O 1.22013 * 119.96581 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46553 * 90.00031 * 1 2 3 29 29 H 1.08992 * 109.47395 * 209.99856 * 1 2 3 30 30 H 1.08999 * 109.47119 * 330.00636 * 1 2 3 31 31 H 1.08001 * 119.50395 * 0.04135 * 3 2 1 32 32 H 1.08001 * 120.07062 * 180.02562 * 4 3 2 33 33 H 0.96994 * 119.99642 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46850 * 299.99651 * 9 8 6 35 35 H 1.08996 * 109.47091 * 59.99840 * 9 8 6 36 36 H 1.08998 * 109.45989 * 301.33743 * 12 10 9 37 37 H 1.08995 * 109.45686 * 61.30709 * 12 10 9 38 38 H 1.09002 * 109.49527 * 58.58819 * 13 12 10 39 39 H 1.08998 * 109.49065 * 178.64927 * 13 12 10 40 40 H 1.08993 * 109.58722 * 174.42519 * 14 13 12 41 41 H 1.08994 * 109.58632 * 294.85280 * 14 13 12 42 42 H 0.96999 * 120.00324 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58348 * 293.81886 * 24 15 14 44 44 H 1.09000 * 109.58512 * 173.39222 * 24 15 14 45 45 H 1.08004 * 120.49261 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4841 1.2185 -0.0005 5 6 4.2201 0.0141 -0.0016 6 6 5.7046 0.0371 -0.0028 7 8 6.3282 -1.0054 -0.0042 8 7 6.3603 1.2146 -0.0022 9 6 7.8251 1.2373 -0.0028 10 6 8.3127 2.6875 -0.0014 11 1 7.8694 3.2196 0.8404 12 6 9.8378 2.7136 0.1238 13 6 10.3237 4.1644 0.1583 14 6 9.9340 4.8606 -1.1494 15 7 8.4858 4.7139 -1.3499 16 6 7.6972 5.8116 -1.5692 17 1 6.6565 5.7953 -1.2807 18 6 8.2351 6.9453 -2.1625 19 7 9.3740 6.8678 -2.8178 20 14 7.3429 8.5812 -2.0308 21 1 6.0935 8.4020 -1.2484 22 1 8.2174 9.5685 -1.3484 23 1 7.0081 9.0734 -3.3912 24 6 7.9001 3.3669 -1.3109 25 6 3.5360 -1.1878 -0.0027 26 6 2.1265 -1.1722 -0.0062 27 8 1.5055 -2.2224 -0.0114 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5749 2.1069 0.0007 32 1 3.9997 2.1676 -0.0001 33 1 5.8623 2.0470 -0.0015 34 1 8.1967 0.7286 0.8867 35 1 8.1960 0.7298 -0.8932 36 1 10.1353 2.2089 1.0429 37 1 10.2810 2.2025 -0.7309 38 1 9.8615 4.6829 0.9983 39 1 11.4076 4.1823 0.2716 40 1 10.1894 5.9185 -1.0904 41 1 10.4665 4.3998 -1.9814 42 1 9.7501 7.6602 -3.2321 43 1 8.2668 2.7845 -2.1561 44 1 6.8136 3.4395 -1.3584 45 1 4.0737 -2.1245 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359723109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:07 Heat of formation + Delta-G solvation = -19.428911 kcal Electronic energy + Delta-G solvation = -26521.033877 eV Core-core repulsion = 22732.419834 eV Total energy + Delta-G solvation = -3788.614043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64870 -39.76411 -37.88404 -37.16431 -34.97183 -34.78467 -33.05752 -30.58927 -30.47457 -30.22082 -28.31440 -25.90162 -25.33795 -24.06767 -23.59552 -22.15926 -21.07461 -20.58249 -19.18701 -18.27682 -17.74832 -17.19721 -16.67888 -16.41429 -15.92501 -15.73589 -15.36786 -14.89005 -14.46805 -14.27604 -14.11549 -13.71812 -13.57765 -13.49405 -13.37280 -12.98147 -12.85729 -12.42204 -12.36556 -12.25984 -12.14733 -12.01516 -11.35517 -11.08339 -10.78963 -10.60939 -10.55325 -10.36109 -10.27842 -10.23379 -10.05831 -9.95041 -9.62829 -9.47976 -9.05356 -8.52949 -8.32175 -6.74324 -5.85276 -3.28176 0.17717 1.35531 2.26605 2.69205 3.01497 3.31162 3.38750 3.40641 3.48339 4.16680 4.27468 4.40764 4.43627 4.72914 4.79430 4.83369 4.94994 5.06154 5.19677 5.23500 5.37375 5.39524 5.44432 5.55997 5.67276 5.77244 5.85850 5.88958 5.93619 6.06006 6.16915 6.25648 6.31598 6.38636 6.53107 6.64478 6.66420 6.70864 6.80431 6.89779 7.34700 7.41987 7.62004 7.64421 7.72091 8.07416 8.37678 9.14038 9.77810 10.34551 11.22930 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003030 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.156430 B = 9240.141315 C =10954.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.497 5.497 3 C 0.132 3.868 4 C -0.212 4.212 5 C -0.030 4.030 6 C 0.550 3.450 7 O -0.530 6.530 8 N -0.711 5.711 9 C 0.125 3.875 10 C -0.118 4.118 11 H 0.074 0.926 12 C -0.100 4.100 13 C -0.142 4.142 14 C 0.168 3.832 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.153 3.847 25 C -0.173 4.173 26 C 0.512 3.488 27 O -0.546 6.546 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.019 0.981 44 H 0.050 0.950 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 -8.571 7.533 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.208 5.208 3 C 0.006 3.994 4 C -0.235 4.235 5 C -0.036 4.036 6 C 0.336 3.664 7 O -0.408 6.408 8 N -0.363 5.363 9 C 0.002 3.998 10 C -0.139 4.139 11 H 0.092 0.908 12 C -0.138 4.138 13 C -0.181 4.181 14 C 0.043 3.957 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.027 3.973 25 C -0.196 4.196 26 C 0.313 3.687 27 O -0.428 6.428 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.187 0.813 32 H 0.170 0.830 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.372 -9.833 7.426 17.461 hybrid contribution -0.540 1.514 -0.053 1.608 sum -12.912 -8.319 7.373 17.038 Atomic orbital electron populations 1.22206 0.76931 1.05122 1.04138 1.45399 1.09541 1.06819 1.59072 1.21867 0.93585 0.89428 0.94569 1.20736 0.92664 0.98673 1.11473 1.20539 0.93806 0.93930 0.95359 1.18287 0.86658 0.84160 0.77315 1.90778 1.68483 1.32230 1.49261 1.45995 1.08423 1.08169 1.73676 1.21556 0.77957 0.98153 1.02144 1.21972 0.97096 0.92996 1.01821 0.90764 1.21342 0.94034 0.97929 1.00496 1.22170 0.98875 0.95266 1.01768 1.20807 0.83580 1.00618 0.90733 1.44046 1.03921 1.00548 1.82861 1.19181 0.94213 0.91580 1.33443 0.91682 1.25042 0.97873 0.99403 0.97280 1.70047 1.20712 1.28183 1.35499 0.86252 0.79054 0.84241 0.77350 1.20282 1.21551 1.21743 1.20903 0.96493 0.87421 0.92521 1.22722 0.92138 0.99739 1.05004 1.17089 0.88910 0.82888 0.79783 1.90965 1.69375 1.29740 1.52727 0.90373 0.88707 0.89410 0.81303 0.83049 0.75937 0.91592 0.91189 0.93367 0.92409 0.92742 0.93145 0.89520 0.96421 0.93627 0.96275 0.93199 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.34 59.85 0.62 0.93 16 2 N -0.50 -4.22 2.98 -127.14 -0.38 -4.60 16 3 C 0.13 0.84 10.25 -16.90 -0.17 0.67 16 4 C -0.21 -1.71 9.51 -39.54 -0.38 -2.09 16 5 C -0.03 -0.33 5.91 -104.56 -0.62 -0.95 16 6 C 0.55 7.42 7.80 -12.05 -0.09 7.33 16 7 O -0.53 -8.98 16.39 5.38 0.09 -8.89 16 8 N -0.71 -8.67 5.29 -61.05 -0.32 -8.99 16 9 C 0.13 1.69 5.07 -4.04 -0.02 1.67 16 10 C -0.12 -1.79 2.37 -90.50 -0.21 -2.01 16 11 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.68 16 13 C -0.14 -2.53 6.08 -26.61 -0.16 -2.70 16 14 C 0.17 3.82 5.31 -3.71 -0.02 3.80 16 15 N -0.59 -13.82 2.99 -172.32 -0.52 -14.33 16 16 C -0.25 -6.55 9.59 -15.06 -0.14 -6.69 16 17 H 0.07 1.61 7.89 -52.48 -0.41 1.20 16 18 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.26 11.19 55.49 0.62 -24.64 16 20 Si 0.90 20.63 29.59 -169.99 -5.03 15.60 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.15 2.88 5.60 -3.71 -0.02 2.86 16 25 C -0.17 -2.14 9.61 -38.53 -0.37 -2.51 16 26 C 0.51 6.32 7.42 -15.31 -0.11 6.21 16 27 O -0.55 -8.46 16.62 4.91 0.08 -8.38 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.63 7.38 -51.93 -0.38 0.25 16 30 H 0.09 0.20 8.00 -51.93 -0.42 -0.22 16 31 H 0.17 0.40 8.02 -52.49 -0.42 -0.02 16 32 H 0.15 0.94 6.50 -52.49 -0.34 0.60 16 33 H 0.40 4.19 5.81 -40.82 -0.24 3.95 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.23 6.04 -51.93 -0.31 1.91 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.87 7.14 -51.93 -0.37 0.50 16 45 H 0.16 2.14 7.69 -52.48 -0.40 1.73 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -33.92 365.50 -8.54 -42.46 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.66 Total: 1.43 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.93 Total: 4.83 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.60 Total: -52.56 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.92 -8.54 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.034 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds