Wall clock time and date at job start Fri Apr 10 2020 18:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35696 * 119.44193 * 2 1 4 4 C 1.35266 * 121.00195 * 180.02562 * 3 2 1 5 5 C 1.41151 * 119.86759 * 0.02562 * 4 3 2 6 6 C 1.48461 * 120.53782 * 179.97438 * 5 4 3 7 7 O 1.21481 * 119.99534 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00118 * 0.02615 * 6 5 4 9 9 C 1.46504 * 119.99806 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.49653 * 54.93099 * 10 9 8 12 12 C 1.53041 * 109.49874 * 174.99903 * 10 9 8 13 13 C 1.53044 * 109.53521 * 181.31674 * 12 10 9 14 14 C 1.53190 * 109.31476 * 298.63373 * 13 12 10 15 15 N 1.46929 * 108.77451 * 54.63720 * 14 13 12 16 16 C 1.36929 * 120.62981 * 126.40965 * 15 14 13 17 17 H 1.08003 * 120.00601 * 207.66879 * 16 15 14 18 18 C 1.38813 * 120.00029 * 27.67759 * 16 15 14 19 19 N 1.31620 * 120.00209 * 17.35504 * 18 16 15 20 20 Si 1.86803 * 120.00079 * 197.36411 * 18 16 15 21 21 H 1.48501 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47039 * 119.99322 * 20 18 16 23 23 H 1.48491 * 109.47300 * 239.99496 * 20 18 16 24 24 C 1.46929 * 118.73840 * 306.39219 * 15 14 13 25 25 C 1.38296 * 118.92298 * 0.02562 * 5 4 3 26 26 C 1.34596 * 119.43863 * 180.30534 * 2 1 3 27 27 O 1.22013 * 119.96581 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46553 * 90.00031 * 1 2 3 29 29 H 1.08992 * 109.47395 * 209.99856 * 1 2 3 30 30 H 1.08999 * 109.47119 * 330.00636 * 1 2 3 31 31 H 1.08001 * 119.50395 * 0.04135 * 3 2 1 32 32 H 1.08001 * 120.07062 * 180.02562 * 4 3 2 33 33 H 0.96994 * 119.99642 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46850 * 299.99651 * 9 8 6 35 35 H 1.08996 * 109.47091 * 59.99840 * 9 8 6 36 36 H 1.08998 * 109.45989 * 301.33743 * 12 10 9 37 37 H 1.08995 * 109.45686 * 61.30709 * 12 10 9 38 38 H 1.09002 * 109.49527 * 58.58819 * 13 12 10 39 39 H 1.08998 * 109.49065 * 178.64927 * 13 12 10 40 40 H 1.08993 * 109.58722 * 174.42519 * 14 13 12 41 41 H 1.08994 * 109.58632 * 294.85280 * 14 13 12 42 42 H 0.96999 * 120.00324 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58348 * 293.81886 * 24 15 14 44 44 H 1.09000 * 109.58512 * 173.39222 * 24 15 14 45 45 H 1.08004 * 120.49261 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4841 1.2185 -0.0005 5 6 4.2201 0.0141 -0.0016 6 6 5.7046 0.0371 -0.0028 7 8 6.3282 -1.0054 -0.0042 8 7 6.3603 1.2146 -0.0022 9 6 7.8251 1.2373 -0.0028 10 6 8.3127 2.6875 -0.0014 11 1 7.8694 3.2196 0.8404 12 6 9.8378 2.7136 0.1238 13 6 10.3237 4.1644 0.1583 14 6 9.9340 4.8606 -1.1494 15 7 8.4858 4.7139 -1.3499 16 6 7.6972 5.8116 -1.5692 17 1 6.6565 5.7953 -1.2807 18 6 8.2351 6.9453 -2.1625 19 7 9.3740 6.8678 -2.8178 20 14 7.3429 8.5812 -2.0308 21 1 6.0935 8.4020 -1.2484 22 1 8.2174 9.5685 -1.3484 23 1 7.0081 9.0734 -3.3912 24 6 7.9001 3.3669 -1.3109 25 6 3.5360 -1.1878 -0.0027 26 6 2.1265 -1.1722 -0.0062 27 8 1.5055 -2.2224 -0.0114 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5749 2.1069 0.0007 32 1 3.9997 2.1676 -0.0001 33 1 5.8623 2.0470 -0.0015 34 1 8.1967 0.7286 0.8867 35 1 8.1960 0.7298 -0.8932 36 1 10.1353 2.2089 1.0429 37 1 10.2810 2.2025 -0.7309 38 1 9.8615 4.6829 0.9983 39 1 11.4076 4.1823 0.2716 40 1 10.1894 5.9185 -1.0904 41 1 10.4665 4.3998 -1.9814 42 1 9.7501 7.6602 -3.2321 43 1 8.2668 2.7845 -2.1561 44 1 6.8136 3.4395 -1.3584 45 1 4.0737 -2.1245 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359723109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:06 Heat of formation + Delta-G solvation = -42.190184 kcal Electronic energy + Delta-G solvation = -26522.020880 eV Core-core repulsion = 22732.419834 eV Total energy + Delta-G solvation = -3789.601046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44463 -40.86179 -39.33949 -38.05053 -36.33773 -35.58666 -34.63853 -32.26300 -31.97267 -30.97441 -29.06315 -27.24128 -26.92174 -24.97912 -24.41476 -23.76034 -22.49982 -21.65942 -20.61736 -19.18426 -18.63857 -18.48573 -17.89699 -17.16421 -16.86660 -16.82344 -16.70783 -16.47384 -15.74302 -15.42357 -15.23054 -15.04137 -14.97854 -14.48595 -14.25896 -14.11438 -13.98306 -13.71738 -13.63416 -13.46134 -12.98438 -12.90252 -12.84390 -12.74956 -12.48533 -12.19266 -11.90875 -11.78700 -11.67280 -11.52874 -11.31066 -11.14019 -11.06651 -10.93730 -10.49728 -10.14266 -9.08818 -8.64050 -7.81999 -5.27382 -0.66463 0.62583 1.50769 1.53276 1.60944 1.62809 1.70167 1.98796 2.55593 2.62540 3.33555 3.46194 3.61852 3.66899 3.71747 4.00643 4.04665 4.07201 4.09695 4.15244 4.42218 4.44356 4.46498 4.60400 4.63131 4.71981 4.80036 4.81902 4.90142 4.93982 4.95186 5.03915 5.10184 5.15043 5.22990 5.34691 5.38507 5.43921 5.48820 5.62060 5.71838 5.82345 5.92687 6.41371 6.44573 6.81160 7.05062 7.19286 7.91132 8.43495 9.24630 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003030 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.156430 B = 9240.141315 C =10954.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.489 5.489 3 C 0.161 3.839 4 C -0.225 4.225 5 C -0.017 4.017 6 C 0.549 3.451 7 O -0.571 6.571 8 N -0.699 5.699 9 C 0.134 3.866 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.099 4.099 13 C -0.130 4.130 14 C 0.172 3.828 15 N -0.609 5.609 16 C -0.256 4.256 17 H 0.079 0.921 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.965 3.035 21 H -0.257 1.257 22 H -0.296 1.296 23 H -0.298 1.298 24 C 0.151 3.849 25 C -0.212 4.212 26 C 0.503 3.497 27 O -0.595 6.595 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.227 0.773 32 H 0.178 0.822 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.051 0.949 41 H -0.010 1.010 42 H 0.247 0.753 43 H 0.003 0.997 44 H 0.064 0.936 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -6.870 9.125 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.197 5.197 3 C 0.034 3.966 4 C -0.247 4.247 5 C -0.024 4.024 6 C 0.336 3.664 7 O -0.451 6.451 8 N -0.351 5.351 9 C 0.010 3.990 10 C -0.120 4.120 11 H 0.102 0.898 12 C -0.137 4.137 13 C -0.169 4.169 14 C 0.046 3.954 15 N -0.332 5.332 16 C -0.386 4.386 17 H 0.096 0.904 18 C -0.251 4.251 19 N -0.586 5.586 20 Si 0.794 3.206 21 H -0.181 1.181 22 H -0.223 1.223 23 H -0.225 1.225 24 C 0.025 3.975 25 C -0.235 4.235 26 C 0.306 3.694 27 O -0.482 6.482 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.244 0.756 32 H 0.195 0.805 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.083 0.917 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.642 -8.110 9.041 19.023 hybrid contribution 0.137 1.048 -0.586 1.209 sum -14.505 -7.062 8.455 18.214 Atomic orbital electron populations 1.22525 0.74682 1.06478 1.05315 1.45560 1.11086 1.06440 1.56662 1.22750 0.93383 0.90127 0.90337 1.21043 0.93513 0.98084 1.12031 1.20482 0.92497 0.94901 0.94566 1.18631 0.87609 0.83730 0.76458 1.90761 1.69528 1.33706 1.51119 1.45869 1.07997 1.08378 1.72861 1.21381 0.78640 0.96751 1.02203 1.21728 0.97041 0.93511 0.99713 0.89806 1.21346 0.94092 0.96266 1.01966 1.21991 1.00020 0.96306 0.98544 1.20629 0.83572 0.98798 0.92419 1.44325 1.03977 1.01888 1.82983 1.19640 0.94907 0.92230 1.31828 0.90380 1.25820 0.98845 1.02676 0.97723 1.70216 1.22621 1.28477 1.37274 0.85239 0.78524 0.80051 0.76827 1.18087 1.22349 1.22548 1.21060 0.97151 0.85320 0.93962 1.22473 0.92656 0.99543 1.08852 1.17048 0.88773 0.83590 0.80003 1.90924 1.70061 1.31565 1.55663 0.89280 0.90520 0.84928 0.75632 0.80480 0.74532 0.90551 0.92259 0.90169 0.92862 0.92564 0.91561 0.93067 0.99223 0.94401 0.97858 0.91741 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.38 10.34 127.77 1.32 1.70 16 2 N -0.49 -6.98 2.98 -674.34 -2.01 -8.99 16 3 C 0.16 1.26 10.25 83.41 0.86 2.11 16 4 C -0.22 -2.76 9.51 22.30 0.21 -2.55 16 5 C -0.02 -0.37 5.91 -19.82 -0.12 -0.49 16 6 C 0.55 14.33 7.80 86.97 0.68 15.00 16 7 O -0.57 -19.63 16.39 -3.66 -0.06 -19.69 16 8 N -0.70 -15.38 5.29 -465.37 -2.46 -17.84 16 9 C 0.13 3.31 5.07 86.38 0.44 3.75 16 10 C -0.10 -2.75 2.37 -10.72 -0.03 -2.78 16 11 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 12 C -0.10 -2.80 5.17 30.62 0.16 -2.65 16 13 C -0.13 -4.44 6.08 30.67 0.19 -4.26 16 14 C 0.17 7.90 5.31 86.36 0.46 8.35 16 15 N -0.61 -28.06 2.99 -699.11 -2.09 -30.15 16 16 C -0.26 -12.89 9.59 84.03 0.81 -12.08 16 17 H 0.08 3.65 7.89 -2.91 -0.02 3.63 16 18 C -0.06 -2.95 4.91 84.86 0.42 -2.53 16 19 N -0.94 -54.08 11.19 21.65 0.24 -53.84 16 20 Si 0.96 42.13 29.59 68.60 2.03 44.16 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 24 C 0.15 5.41 5.60 86.36 0.48 5.90 16 25 C -0.21 -5.49 9.61 22.95 0.22 -5.27 16 26 C 0.50 12.55 7.42 84.94 0.63 13.18 16 27 O -0.60 -19.48 16.62 -5.36 -0.09 -19.57 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.93 7.38 -2.39 -0.02 0.91 16 30 H 0.13 -0.16 8.00 -2.39 -0.02 -0.18 16 31 H 0.23 -0.72 8.02 -2.91 -0.02 -0.75 16 32 H 0.18 1.27 6.50 -2.91 -0.02 1.25 16 33 H 0.42 7.11 5.81 -92.71 -0.54 6.57 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 45 H 0.14 4.09 7.69 -2.91 -0.02 4.07 16 Total: -1.00 -79.41 365.50 2.74 -76.67 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.46 Total: 11.85 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.72 Total: 17.40 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -6.32 Total: -110.83 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.15 Total: -39.26 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -79.41 2.74 -76.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.482 kcal (2) G-P(sol) polarization free energy of solvation -79.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds