Wall clock time and date at job start Fri Apr 10 2020 18:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33475 * 125.49555 * 2 1 4 4 C 1.30330 * 109.72367 * 179.97438 * 3 2 1 5 5 N 1.34681 * 108.04474 * 0.04438 * 4 3 2 6 6 N 1.30974 * 125.49760 * 179.97438 * 2 1 3 7 7 C 1.46294 * 125.04655 * 179.91064 * 5 4 3 8 8 C 1.53295 * 108.77864 * 342.99324 * 7 5 4 9 9 H 1.09007 * 109.47115 * 290.11134 * 8 7 5 10 10 N 1.46501 * 109.47273 * 170.12247 * 8 7 5 11 11 C 1.34768 * 120.00163 * 84.99339 * 10 8 7 12 12 O 1.21594 * 120.00152 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00163 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00355 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47294 * 184.79928 * 14 13 11 16 16 C 1.50707 * 115.55327 * 294.81748 * 15 14 13 17 17 H 1.08002 * 119.99591 * 95.47496 * 16 15 14 18 18 C 1.37864 * 120.00117 * 275.20829 * 16 15 14 19 19 N 1.31520 * 120.00161 * 355.12650 * 18 16 15 20 20 Si 1.86805 * 120.00088 * 175.12907 * 18 16 15 21 21 H 1.48503 * 109.46901 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46900 * 119.99577 * 20 18 16 23 23 H 1.48499 * 109.47369 * 239.99676 * 20 18 16 24 24 C 1.53005 * 117.49965 * 80.49192 * 15 14 13 25 25 C 1.53003 * 117.50015 * 149.15122 * 15 14 13 26 26 C 1.53161 * 109.49452 * 50.11098 * 8 7 5 27 27 C 1.50923 * 127.90280 * 180.08909 * 4 3 2 28 28 H 1.09001 * 109.47274 * 90.02510 * 1 2 3 29 29 H 1.09002 * 109.47513 * 210.02317 * 1 2 3 30 30 H 1.09006 * 109.47390 * 330.02386 * 1 2 3 31 31 H 1.09005 * 109.58683 * 223.20551 * 7 5 4 32 32 H 1.08995 * 109.70543 * 102.85288 * 7 5 4 33 33 H 0.97001 * 119.99914 * 265.00858 * 10 8 7 34 34 H 0.97001 * 119.99914 * 0.02562 * 13 11 10 35 35 H 1.09003 * 109.46799 * 64.79993 * 14 13 11 36 36 H 1.09003 * 109.47058 * 304.80225 * 14 13 11 37 37 H 0.97001 * 120.00086 * 185.00382 * 19 18 16 38 38 H 1.09004 * 117.49670 * 215.00170 * 24 15 14 39 39 H 1.08993 * 117.50071 * 0.02562 * 24 15 14 40 40 H 1.09002 * 117.49736 * 359.97024 * 25 15 14 41 41 H 1.08996 * 117.49896 * 144.99812 * 25 15 14 42 42 H 1.09007 * 109.50581 * 50.76487 * 26 8 7 43 43 H 1.09000 * 109.50840 * 170.88750 * 26 8 7 44 44 H 1.08999 * 109.72202 * 283.66523 * 27 4 3 45 45 H 1.09002 * 109.71449 * 44.31458 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 0.0005 5 7 3.5896 -0.6133 -0.0001 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4052 -0.0016 8 6 5.9855 -0.5052 -0.4269 9 1 5.8857 -0.2562 -1.4834 10 7 7.2512 -1.2100 -0.2090 11 6 7.7255 -2.0500 -1.1501 12 8 7.1032 -2.2226 -2.1803 13 7 8.8897 -2.6987 -0.9494 14 6 9.4056 -3.6114 -1.9727 15 6 10.6668 -4.3024 -1.4507 16 6 11.8471 -3.3990 -1.2013 17 1 12.0299 -3.0106 -0.2103 18 6 12.6965 -3.0729 -2.2371 19 7 12.5339 -3.6249 -3.4196 20 14 14.0787 -1.8469 -1.9608 21 1 14.0465 -1.3735 -0.5536 22 1 15.3832 -2.5020 -2.2335 23 1 13.9047 -0.6903 -2.8758 24 6 10.4812 -5.4972 -0.5131 25 6 10.9551 -5.7190 -1.9517 26 6 5.9678 0.7811 0.4043 27 6 4.7522 1.6265 0.0026 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.7210 -2.2321 -0.7050 32 1 5.0061 -1.7965 0.9984 33 1 7.7478 -1.0722 0.6128 34 1 9.3860 -2.5613 -0.1274 35 1 9.6467 -3.0478 -2.8740 36 1 8.6498 -4.3618 -2.2047 37 1 13.1737 -3.4519 -4.1279 38 1 11.2127 -5.6298 0.2841 39 1 9.4606 -5.7912 -0.2686 40 1 10.2458 -6.1589 -2.6528 41 1 11.9982 -5.9976 -2.1009 42 1 5.9023 0.5295 1.4629 43 1 6.8813 1.3463 0.2199 44 1 4.9057 2.0409 -0.9938 45 1 4.6129 2.4349 0.7204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366633394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:12 Heat of formation + Delta-G solvation = 75.022810 kcal Electronic energy + Delta-G solvation = -26431.325706 eV Core-core repulsion = 22679.100148 eV Total energy + Delta-G solvation = -3752.225558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50887 -39.85497 -37.63182 -36.62819 -33.88812 -33.44890 -33.35262 -32.01932 -31.34897 -29.54535 -27.96197 -26.16073 -25.13702 -24.41732 -22.70734 -21.25436 -20.90211 -20.41602 -19.86395 -19.47010 -17.83241 -17.14803 -16.55492 -16.28209 -15.70170 -15.39617 -14.88923 -14.68783 -14.54281 -14.36027 -14.28836 -13.95146 -13.56728 -13.41659 -13.16235 -12.82746 -12.81334 -12.66589 -12.21448 -12.06735 -11.90171 -11.63330 -11.44693 -11.31993 -11.05621 -11.00437 -10.57444 -10.29356 -10.18159 -9.93272 -9.84443 -9.54084 -9.44888 -9.23737 -9.09349 -8.55217 -8.33490 -8.13431 -6.13049 -4.23205 1.45428 2.01699 2.69495 2.93515 3.19988 3.29454 3.30315 3.51312 3.65347 4.07853 4.20745 4.28930 4.35665 4.53243 4.67437 4.70990 4.88713 4.97483 5.14826 5.20522 5.27739 5.31750 5.32519 5.35293 5.51598 5.53977 5.64212 5.68408 5.96241 6.18899 6.28525 6.29422 6.36574 6.41542 6.51212 6.64598 6.64972 6.75015 7.06778 7.13779 7.30005 7.34804 7.51362 7.75560 7.97219 8.27761 8.44941 8.78293 8.97553 9.44278 10.94065 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002561 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.034916 B =10929.820760 C =11681.342880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.212 3.788 3 N -0.540 5.540 4 C 0.274 3.726 5 N -0.367 5.367 6 N -0.313 5.313 7 C 0.115 3.885 8 C 0.157 3.843 9 H 0.102 0.898 10 N -0.744 5.744 11 C 0.697 3.303 12 O -0.599 6.599 13 N -0.716 5.716 14 C 0.181 3.819 15 C 0.023 3.977 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 8.890 9.652 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 N -0.268 5.268 4 C -0.002 4.002 5 N -0.158 5.158 6 N -0.142 5.142 7 C -0.009 4.009 8 C 0.048 3.952 9 H 0.120 0.880 10 N -0.401 5.401 11 C 0.397 3.603 12 O -0.477 6.477 13 N -0.368 5.368 14 C 0.058 3.942 15 C 0.023 3.977 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.248 4.248 25 C -0.180 4.180 26 C -0.175 4.175 27 C -0.076 4.076 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.232 0.768 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.863 8.240 8.446 19.771 hybrid contribution 1.598 0.541 0.750 1.846 sum -14.265 8.781 9.195 19.109 Atomic orbital electron populations 1.20059 0.83936 1.03844 1.03657 1.24414 0.98236 0.85564 0.98754 1.70156 0.99816 1.30877 1.26000 1.24295 0.95060 0.84062 0.96793 1.50103 1.05671 1.05792 1.54260 1.77960 0.86631 1.22586 1.27050 1.22429 0.79034 0.95311 1.04151 1.20848 0.82198 0.90053 1.02056 0.87953 1.44971 1.23673 1.49199 1.22271 1.16072 0.81947 0.79109 0.83175 1.90910 1.60616 1.68689 1.27531 1.45177 1.21343 1.46814 1.23417 1.20903 0.93363 0.90368 0.89613 1.19057 0.93442 0.87229 0.98016 1.20365 1.09287 1.29120 0.94955 0.92182 1.24998 0.97380 0.95757 0.95006 1.69999 1.35545 1.42741 1.02671 0.86575 0.81912 0.81451 0.78253 1.19756 1.21028 1.20950 1.23015 0.99282 1.08237 0.94257 1.22474 1.00502 1.01340 0.93658 1.22059 0.99311 0.95476 1.00665 1.20317 0.86294 0.95735 1.05213 0.89941 0.90121 0.89676 0.87822 0.89234 0.76571 0.76793 0.91563 0.94267 0.92870 0.90413 0.91740 0.91780 0.89481 0.90210 0.88220 0.87745 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.21 2.75 8.15 -156.43 -1.27 1.48 16 3 N -0.54 -7.16 11.18 -8.03 -0.09 -7.25 16 4 C 0.27 3.23 7.72 -155.78 -1.20 2.03 16 5 N -0.37 -4.77 4.04 -58.30 -0.24 -5.00 16 6 N -0.31 -4.55 12.74 32.50 0.41 -4.14 16 7 C 0.11 1.32 6.87 -4.00 -0.03 1.30 16 8 C 0.16 1.62 2.47 -67.69 -0.17 1.46 16 9 H 0.10 1.30 7.55 -51.93 -0.39 0.91 16 10 N -0.74 -8.49 5.08 -58.44 -0.30 -8.79 16 11 C 0.70 11.76 8.53 -86.93 -0.74 11.02 16 12 O -0.60 -12.58 16.00 5.28 0.08 -12.50 16 13 N -0.72 -12.68 5.48 -65.23 -0.36 -13.04 16 14 C 0.18 3.91 5.50 -4.05 -0.02 3.89 16 15 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 16 C -0.50 -12.31 8.59 -34.44 -0.30 -12.61 16 17 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 18 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 19 N -0.87 -23.64 12.66 55.43 0.70 -22.94 16 20 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 25 C -0.14 -3.16 9.15 -26.69 -0.24 -3.40 16 26 C -0.14 -0.92 5.43 -26.43 -0.14 -1.06 16 27 C -0.04 -0.26 6.33 -27.56 -0.17 -0.44 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 3.38 8.62 -40.82 -0.35 3.02 16 34 H 0.40 6.30 8.34 -40.82 -0.34 5.96 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.26 6.80 8.32 -40.82 -0.34 6.47 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.73 376.88 -10.60 -43.32 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.97 Total: 8.61 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -4.51 Total: 1.15 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.14 Total: -61.15 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.73 -10.60 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366633394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.345 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds