Wall clock time and date at job start Fri Apr 10 2020 18:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33475 * 125.49555 * 2 1 4 4 C 1.30330 * 109.72367 * 179.97438 * 3 2 1 5 5 N 1.34681 * 108.04474 * 0.04438 * 4 3 2 6 6 N 1.30974 * 125.49760 * 179.97438 * 2 1 3 7 7 C 1.46294 * 125.04655 * 179.91064 * 5 4 3 8 8 C 1.53295 * 108.77864 * 342.99324 * 7 5 4 9 9 H 1.09007 * 109.47115 * 290.11134 * 8 7 5 10 10 N 1.46501 * 109.47273 * 170.12247 * 8 7 5 11 11 C 1.34768 * 120.00163 * 84.99339 * 10 8 7 12 12 O 1.21594 * 120.00152 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00163 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00355 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47294 * 184.79928 * 14 13 11 16 16 C 1.50707 * 115.55327 * 294.81748 * 15 14 13 17 17 H 1.08002 * 119.99591 * 95.47496 * 16 15 14 18 18 C 1.37864 * 120.00117 * 275.20829 * 16 15 14 19 19 N 1.31520 * 120.00161 * 355.12650 * 18 16 15 20 20 Si 1.86805 * 120.00088 * 175.12907 * 18 16 15 21 21 H 1.48503 * 109.46901 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46900 * 119.99577 * 20 18 16 23 23 H 1.48499 * 109.47369 * 239.99676 * 20 18 16 24 24 C 1.53005 * 117.49965 * 80.49192 * 15 14 13 25 25 C 1.53003 * 117.50015 * 149.15122 * 15 14 13 26 26 C 1.53161 * 109.49452 * 50.11098 * 8 7 5 27 27 C 1.50923 * 127.90280 * 180.08909 * 4 3 2 28 28 H 1.09001 * 109.47274 * 90.02510 * 1 2 3 29 29 H 1.09002 * 109.47513 * 210.02317 * 1 2 3 30 30 H 1.09006 * 109.47390 * 330.02386 * 1 2 3 31 31 H 1.09005 * 109.58683 * 223.20551 * 7 5 4 32 32 H 1.08995 * 109.70543 * 102.85288 * 7 5 4 33 33 H 0.97001 * 119.99914 * 265.00858 * 10 8 7 34 34 H 0.97001 * 119.99914 * 0.02562 * 13 11 10 35 35 H 1.09003 * 109.46799 * 64.79993 * 14 13 11 36 36 H 1.09003 * 109.47058 * 304.80225 * 14 13 11 37 37 H 0.97001 * 120.00086 * 185.00382 * 19 18 16 38 38 H 1.09004 * 117.49670 * 215.00170 * 24 15 14 39 39 H 1.08993 * 117.50071 * 0.02562 * 24 15 14 40 40 H 1.09002 * 117.49736 * 359.97024 * 25 15 14 41 41 H 1.08996 * 117.49896 * 144.99812 * 25 15 14 42 42 H 1.09007 * 109.50581 * 50.76487 * 26 8 7 43 43 H 1.09000 * 109.50840 * 170.88750 * 26 8 7 44 44 H 1.08999 * 109.72202 * 283.66523 * 27 4 3 45 45 H 1.09002 * 109.71449 * 44.31458 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 0.0005 5 7 3.5896 -0.6133 -0.0001 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4052 -0.0016 8 6 5.9855 -0.5052 -0.4269 9 1 5.8857 -0.2562 -1.4834 10 7 7.2512 -1.2100 -0.2090 11 6 7.7255 -2.0500 -1.1501 12 8 7.1032 -2.2226 -2.1803 13 7 8.8897 -2.6987 -0.9494 14 6 9.4056 -3.6114 -1.9727 15 6 10.6668 -4.3024 -1.4507 16 6 11.8471 -3.3990 -1.2013 17 1 12.0299 -3.0106 -0.2103 18 6 12.6965 -3.0729 -2.2371 19 7 12.5339 -3.6249 -3.4196 20 14 14.0787 -1.8469 -1.9608 21 1 14.0465 -1.3735 -0.5536 22 1 15.3832 -2.5020 -2.2335 23 1 13.9047 -0.6903 -2.8758 24 6 10.4812 -5.4972 -0.5131 25 6 10.9551 -5.7190 -1.9517 26 6 5.9678 0.7811 0.4043 27 6 4.7522 1.6265 0.0026 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.7210 -2.2321 -0.7050 32 1 5.0061 -1.7965 0.9984 33 1 7.7478 -1.0722 0.6128 34 1 9.3860 -2.5613 -0.1274 35 1 9.6467 -3.0478 -2.8740 36 1 8.6498 -4.3618 -2.2047 37 1 13.1737 -3.4519 -4.1279 38 1 11.2127 -5.6298 0.2841 39 1 9.4606 -5.7912 -0.2686 40 1 10.2458 -6.1589 -2.6528 41 1 11.9982 -5.9976 -2.1009 42 1 5.9023 0.5295 1.4629 43 1 6.8813 1.3463 0.2199 44 1 4.9057 2.0409 -0.9938 45 1 4.6129 2.4349 0.7204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366633394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:11 Heat of formation + Delta-G solvation = 53.157473 kcal Electronic energy + Delta-G solvation = -26432.273858 eV Core-core repulsion = 22679.100148 eV Total energy + Delta-G solvation = -3753.173710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.41828 -41.15326 -38.88012 -38.08174 -35.12892 -34.73690 -34.27607 -33.92902 -32.20989 -30.43396 -28.95375 -27.82878 -26.82182 -25.23457 -23.62650 -22.92838 -21.98756 -21.57821 -21.22589 -20.74382 -19.19164 -18.21366 -17.90475 -17.45503 -16.93696 -16.67812 -16.35073 -15.97660 -15.76185 -15.57609 -15.21569 -15.12549 -14.95763 -14.41098 -14.26568 -14.12206 -13.73864 -13.55751 -13.45643 -13.38663 -12.91764 -12.87924 -12.84932 -12.78410 -12.30663 -12.18802 -12.09031 -12.01083 -11.49712 -11.27775 -11.13287 -10.92926 -10.79236 -10.49088 -10.42079 -10.32614 -10.04623 -9.69199 -8.07436 -6.21669 0.54026 1.09301 1.43076 1.47143 1.55794 1.75800 1.81030 2.17030 2.43996 2.91526 3.16617 3.20850 3.29864 3.47426 3.59189 3.72781 3.80313 3.91437 4.14950 4.25592 4.30322 4.39847 4.54013 4.57458 4.67166 4.71241 4.74885 4.75546 4.86565 4.93700 4.94579 4.98866 5.02573 5.06618 5.28482 5.30283 5.33342 5.46049 5.57321 5.62170 5.71697 5.78698 5.80773 6.10561 6.38461 6.86490 7.04236 7.19928 7.48348 7.62915 8.99672 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002561 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.034916 B =10929.820760 C =11681.342880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.562 5.562 4 C 0.274 3.726 5 N -0.379 5.379 6 N -0.355 5.355 7 C 0.119 3.881 8 C 0.160 3.840 9 H 0.077 0.923 10 N -0.718 5.718 11 C 0.698 3.302 12 O -0.643 6.643 13 N -0.711 5.711 14 C 0.199 3.801 15 C 0.005 3.995 16 C -0.499 4.499 17 H 0.068 0.932 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.258 1.258 22 H -0.288 1.288 23 H -0.290 1.290 24 C -0.176 4.176 25 C -0.157 4.157 26 C -0.123 4.123 27 C -0.033 4.033 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.410 0.590 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 10.710 12.297 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 N -0.291 5.291 4 C -0.002 4.002 5 N -0.170 5.170 6 N -0.185 5.185 7 C -0.005 4.005 8 C 0.052 3.948 9 H 0.095 0.905 10 N -0.376 5.376 11 C 0.397 3.603 12 O -0.525 6.525 13 N -0.364 5.364 14 C 0.074 3.926 15 C 0.004 3.996 16 C -0.537 4.537 17 H 0.086 0.914 18 C -0.179 4.179 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.181 1.181 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.213 4.213 25 C -0.195 4.195 26 C -0.161 4.161 27 C -0.073 4.073 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.258 0.742 34 H 0.246 0.754 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.915 10.089 11.173 21.907 hybrid contribution 1.537 -0.029 -0.077 1.539 sum -14.378 10.060 11.096 20.762 Atomic orbital electron populations 1.20237 0.81402 1.05044 1.04672 1.25216 0.99876 0.85193 0.97406 1.70208 1.00576 1.31182 1.27173 1.25184 0.96022 0.84054 0.94958 1.50156 1.05429 1.06444 1.54966 1.77895 0.87614 1.24022 1.28940 1.22366 0.79253 0.94694 1.04155 1.20908 0.80904 0.91376 1.01583 0.90507 1.44674 1.23823 1.47354 1.21712 1.16199 0.81336 0.79349 0.83388 1.90889 1.61710 1.70112 1.29813 1.44886 1.21851 1.46629 1.23011 1.20400 0.92989 0.90152 0.89057 1.19085 0.93311 0.87427 0.99773 1.20695 1.09392 1.28662 0.94976 0.91436 1.25729 0.99861 0.97356 0.94926 1.70130 1.36530 1.44546 1.03514 0.85629 0.79048 0.79050 0.78612 1.18121 1.21401 1.21620 1.22992 1.00541 1.04906 0.92839 1.22397 0.99428 1.01799 0.95900 1.22047 1.00023 0.93171 1.00864 1.20589 0.84438 0.95609 1.06647 0.88895 0.89157 0.88193 0.91036 0.87557 0.74192 0.75393 0.95790 0.94813 0.93317 0.89574 0.89503 0.91493 0.91724 0.88164 0.85860 0.86838 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.87 10.51 71.24 0.75 -0.12 16 2 C 0.20 5.22 8.15 138.48 1.13 6.35 16 3 N -0.56 -14.33 11.18 -179.31 -2.01 -16.34 16 4 C 0.27 6.06 7.72 138.36 1.07 7.13 16 5 N -0.38 -9.69 4.04 -338.37 -1.37 -11.05 16 6 N -0.36 -10.40 12.74 -51.08 -0.65 -11.06 16 7 C 0.12 2.69 6.87 86.52 0.59 3.29 16 8 C 0.16 3.07 2.47 45.14 0.11 3.18 16 9 H 0.08 1.93 7.55 -2.38 -0.02 1.91 16 10 N -0.72 -14.95 5.08 -457.08 -2.32 -17.27 16 11 C 0.70 23.14 8.53 179.06 1.53 24.67 16 12 O -0.64 -27.65 16.00 -4.01 -0.06 -27.72 16 13 N -0.71 -24.58 5.48 -478.54 -2.62 -27.20 16 14 C 0.20 8.71 5.50 86.38 0.48 9.19 16 15 C 0.00 0.22 1.47 -52.93 -0.08 0.14 16 16 C -0.50 -24.22 8.59 25.60 0.22 -24.00 16 17 H 0.07 3.11 7.82 -2.91 -0.02 3.09 16 18 C 0.02 1.11 5.43 84.65 0.46 1.57 16 19 N -0.91 -50.32 12.66 21.44 0.27 -50.05 16 20 Si 0.95 40.64 29.54 68.60 2.03 42.67 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.18 -6.71 9.96 30.62 0.30 -6.41 16 25 C -0.16 -7.03 9.15 30.62 0.28 -6.75 16 26 C -0.12 -1.21 5.43 30.79 0.17 -1.04 16 27 C -0.03 -0.39 6.33 30.06 0.19 -0.20 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.42 5.62 8.62 -92.71 -0.80 4.83 16 34 H 0.41 12.12 8.34 -92.71 -0.77 11.35 16 35 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 38 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.10 0.67 8.12 -2.38 -0.02 0.65 16 43 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.82 376.88 -0.09 -73.92 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.55 Total: 27.10 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.20 Total: 17.00 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -8.70 Total: -132.96 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -73.82 -0.09 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366633394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.074 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds