Wall clock time and date at job start Fri Apr 10 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33475 * 125.49759 * 2 1 4 4 C 1.30328 * 109.72354 * 180.02562 * 3 2 1 5 5 N 1.34680 * 108.04762 * 359.94512 * 4 3 2 6 6 N 1.30972 * 125.49605 * 180.02562 * 2 1 3 7 7 C 1.46293 * 125.04923 * 180.12057 * 5 4 3 8 8 C 1.53311 * 108.77055 * 17.01261 * 7 5 4 9 9 H 1.08995 * 109.46866 * 69.86975 * 8 7 5 10 10 N 1.46504 * 109.46735 * 189.85850 * 8 7 5 11 11 C 1.34770 * 120.00067 * 275.00205 * 10 8 7 12 12 O 1.21587 * 120.00440 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99936 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99897 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46784 * 176.74306 * 14 13 11 16 16 C 1.50697 * 115.54946 * 294.82867 * 15 14 13 17 17 H 1.08005 * 119.99762 * 98.08352 * 16 15 14 18 18 C 1.37875 * 120.00422 * 278.34754 * 16 15 14 19 19 N 1.31517 * 119.99863 * 6.21646 * 18 16 15 20 20 Si 1.86798 * 120.00276 * 186.20939 * 18 16 15 21 21 H 1.48492 * 109.47080 * 90.00655 * 20 18 16 22 22 H 1.48500 * 109.47014 * 210.00360 * 20 18 16 23 23 H 1.48503 * 109.47174 * 330.00352 * 20 18 16 24 24 C 1.52996 * 117.51766 * 80.53720 * 15 14 13 25 25 C 1.52997 * 60.00222 * 107.47961 * 24 15 14 26 26 C 1.53159 * 109.48561 * 309.86204 * 8 7 5 27 27 C 1.50922 * 127.90092 * 179.89275 * 4 3 2 28 28 H 1.08997 * 109.47186 * 269.97569 * 1 2 3 29 29 H 1.09002 * 109.46924 * 29.97365 * 1 2 3 30 30 H 1.08998 * 109.47466 * 149.97054 * 1 2 3 31 31 H 1.08998 * 109.58976 * 257.22795 * 7 5 4 32 32 H 1.08999 * 109.70576 * 136.86770 * 7 5 4 33 33 H 0.97002 * 119.99235 * 94.99555 * 10 8 7 34 34 H 0.96999 * 120.00156 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47208 * 56.74958 * 14 13 11 36 36 H 1.09000 * 109.47528 * 296.73924 * 14 13 11 37 37 H 0.96997 * 120.00340 * 185.02276 * 19 18 16 38 38 H 1.09012 * 117.49837 * 214.97048 * 24 15 14 39 39 H 1.09001 * 117.50258 * 359.97438 * 24 15 14 40 40 H 1.09005 * 117.49553 * 252.50574 * 25 24 15 41 41 H 1.08999 * 117.50102 * 107.49751 * 25 24 15 42 42 H 1.08995 * 109.50717 * 189.11223 * 26 8 7 43 43 H 1.08999 * 109.50835 * 309.25480 * 26 8 7 44 44 H 1.08998 * 109.72120 * 315.65608 * 27 4 3 45 45 H 1.09003 * 109.71972 * 76.26323 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7324 -0.0005 5 7 3.5897 -0.6134 0.0003 6 7 2.2675 -1.0663 -0.0005 7 6 4.8197 -1.4053 0.0026 8 6 5.9853 -0.5051 0.4285 9 1 5.8846 -0.2558 1.4848 10 7 7.2512 -1.2100 0.2118 11 6 7.7248 -2.0496 1.1536 12 8 7.1017 -2.2218 2.1834 13 7 8.8891 -2.6985 0.9539 14 6 9.4041 -3.6108 1.9780 15 6 10.6871 -4.2733 1.4720 16 6 10.5228 -5.1843 0.2828 17 1 10.7385 -4.8197 -0.7106 18 6 10.0919 -6.4816 0.4625 19 7 9.7076 -6.8880 1.6529 20 14 10.0537 -7.6621 -0.9847 21 1 11.3551 -8.3707 -1.0799 22 1 8.9644 -8.6519 -0.7874 23 1 9.8110 -6.9020 -2.2372 24 6 11.9848 -3.4691 1.5719 25 6 11.7439 -4.6522 2.5115 26 6 5.9681 0.7808 -0.4034 27 6 4.7522 1.6264 -0.0030 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5143 31 1 5.0056 -1.7946 -0.9984 32 1 4.7223 -2.2335 0.7045 33 1 7.7484 -1.0724 -0.6097 34 1 9.3864 -2.5609 0.1326 35 1 8.6586 -4.3773 2.1898 36 1 9.6189 -3.0512 2.8884 37 1 9.4740 -7.8185 1.7957 38 1 12.7198 -3.5988 0.7774 39 1 11.9247 -2.4675 1.9978 40 1 11.5253 -4.4291 3.5558 41 1 12.3204 -5.5604 2.3353 42 1 6.8815 1.3461 -0.2185 43 1 5.9032 0.5287 -1.4619 44 1 4.6133 2.4343 -0.7213 45 1 4.9051 2.0421 0.9930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366633395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:14 Heat of formation + Delta-G solvation = 75.104208 kcal Electronic energy + Delta-G solvation = -26510.882864 eV Core-core repulsion = 22758.660836 eV Total energy + Delta-G solvation = -3752.222028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.47039 -39.81697 -37.60751 -36.63339 -33.85178 -33.41493 -33.31616 -32.04162 -31.31758 -29.50554 -27.92783 -26.11347 -25.12866 -24.38876 -22.67767 -21.30411 -20.87268 -20.38750 -19.83514 -19.44960 -17.83541 -17.12260 -16.49777 -16.25131 -15.69048 -15.36232 -14.87047 -14.61426 -14.54627 -14.30604 -14.28628 -13.96430 -13.43922 -13.32879 -13.30940 -12.80014 -12.75329 -12.67496 -12.18851 -12.02103 -11.84019 -11.64055 -11.41611 -11.28817 -11.12939 -10.91467 -10.59211 -10.34401 -10.14370 -9.90665 -9.80318 -9.62024 -9.40964 -9.20131 -9.01048 -8.55064 -8.36543 -8.09589 -6.13793 -4.22288 1.49812 2.06143 2.73013 2.96975 3.22314 3.30807 3.31243 3.55865 3.67771 4.11079 4.22956 4.30960 4.37909 4.56785 4.69901 4.72991 4.93866 4.99945 5.15937 5.24750 5.27468 5.31493 5.34628 5.37512 5.53269 5.57414 5.67902 5.71077 5.95617 6.22994 6.26499 6.33417 6.39075 6.41769 6.50745 6.61807 6.68741 6.75757 7.00845 7.17852 7.29379 7.40563 7.46301 7.76360 8.01059 8.27439 8.48041 8.78816 9.01717 9.45427 10.94769 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002785 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.246673 B =10052.838181 C =10935.364799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.211 3.789 3 N -0.540 5.540 4 C 0.272 3.728 5 N -0.366 5.366 6 N -0.312 5.312 7 C 0.113 3.887 8 C 0.158 3.842 9 H 0.102 0.898 10 N -0.745 5.745 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.715 5.715 14 C 0.180 3.820 15 C 0.029 3.971 16 C -0.500 4.500 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.872 5.872 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.209 4.209 25 C -0.152 4.152 26 C -0.136 4.136 27 C -0.035 4.035 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.399 0.601 34 H 0.396 0.604 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 16.604 -5.454 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 N -0.269 5.269 4 C -0.004 4.004 5 N -0.157 5.157 6 N -0.141 5.141 7 C -0.011 4.011 8 C 0.049 3.951 9 H 0.120 0.880 10 N -0.402 5.402 11 C 0.398 3.602 12 O -0.476 6.476 13 N -0.366 5.366 14 C 0.057 3.943 15 C 0.028 3.972 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.508 5.508 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.190 4.190 26 C -0.175 4.175 27 C -0.075 4.075 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.234 0.766 34 H 0.230 0.770 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.575 15.748 -4.370 18.941 hybrid contribution 0.744 -0.910 -1.461 1.875 sum -8.830 14.838 -5.831 18.225 Atomic orbital electron populations 1.20056 0.83954 1.03835 1.03635 1.24411 0.98230 0.85561 0.98858 1.70144 0.99805 1.30903 1.26037 1.24275 0.95055 0.84082 0.97001 1.50114 1.05705 1.05771 1.54108 1.77984 0.86642 1.22576 1.26850 1.22461 0.78923 0.95339 1.04381 1.20837 0.82287 0.90009 1.01923 0.88010 1.44975 1.23628 1.49371 1.22186 1.16056 0.81853 0.79077 0.83261 1.90910 1.60248 1.68658 1.27801 1.45139 1.21709 1.46415 1.23370 1.20912 0.96912 0.89786 0.86730 1.19042 0.84873 0.96133 0.97121 1.20341 1.46091 0.95835 0.91472 0.92242 1.24968 0.94000 0.98329 0.95732 1.69993 1.42770 1.16255 1.21765 0.86655 0.77710 0.81092 0.82914 1.20629 1.21255 1.19903 1.22995 1.03738 0.94502 1.03441 1.22521 1.05112 0.97339 0.94031 1.22055 0.99190 0.95459 1.00763 1.20302 0.86346 0.95712 1.05119 0.89960 0.89706 0.90111 0.89134 0.87648 0.76624 0.77020 0.90570 0.94840 0.92812 0.90349 0.91577 0.91585 0.89877 0.88351 0.90189 0.87325 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.21 2.85 8.15 -156.43 -1.27 1.58 16 3 N -0.54 -7.34 11.18 -8.03 -0.09 -7.43 16 4 C 0.27 3.29 7.72 -155.78 -1.20 2.09 16 5 N -0.37 -5.00 4.04 -58.30 -0.24 -5.23 16 6 N -0.31 -4.77 12.74 32.51 0.41 -4.36 16 7 C 0.11 1.41 6.87 -3.99 -0.03 1.38 16 8 C 0.16 1.67 2.47 -67.69 -0.17 1.51 16 9 H 0.10 1.29 7.55 -51.93 -0.39 0.89 16 10 N -0.74 -8.69 5.08 -58.44 -0.30 -8.98 16 11 C 0.70 12.02 8.53 -86.92 -0.74 11.28 16 12 O -0.60 -12.83 16.01 5.29 0.08 -12.74 16 13 N -0.71 -12.83 5.47 -65.23 -0.36 -13.19 16 14 C 0.18 3.93 5.50 -4.04 -0.02 3.91 16 15 C 0.03 0.65 1.31 -155.66 -0.20 0.45 16 16 C -0.50 -12.41 8.68 -34.44 -0.30 -12.71 16 17 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 18 C 0.07 1.92 5.41 -17.82 -0.10 1.83 16 19 N -0.87 -23.84 13.07 55.43 0.72 -23.11 16 20 Si 0.89 20.21 29.55 -169.99 -5.02 15.19 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.21 -4.11 9.95 -26.73 -0.27 -4.37 16 25 C -0.15 -3.33 9.63 -26.73 -0.26 -3.58 16 26 C -0.14 -0.91 5.43 -26.43 -0.14 -1.05 16 27 C -0.03 -0.26 6.33 -27.55 -0.17 -0.43 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.40 3.45 8.62 -40.82 -0.35 3.10 16 34 H 0.40 6.29 8.45 -40.82 -0.34 5.95 16 35 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.26 6.92 8.32 -40.82 -0.34 6.59 16 38 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -33.07 377.76 -10.55 -43.63 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.97 Total: 8.79 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -4.50 Total: 1.75 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.16 Total: -62.30 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.07 -10.55 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366633395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.731 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds