Wall clock time and date at job start Fri Apr 10 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33475 * 125.49759 * 2 1 4 4 C 1.30328 * 109.72354 * 180.02562 * 3 2 1 5 5 N 1.34680 * 108.04762 * 359.94512 * 4 3 2 6 6 N 1.30972 * 125.49605 * 180.02562 * 2 1 3 7 7 C 1.46293 * 125.04923 * 180.12057 * 5 4 3 8 8 C 1.53311 * 108.77055 * 17.01261 * 7 5 4 9 9 H 1.08995 * 109.46866 * 69.86975 * 8 7 5 10 10 N 1.46504 * 109.46735 * 189.85850 * 8 7 5 11 11 C 1.34770 * 120.00067 * 275.00205 * 10 8 7 12 12 O 1.21587 * 120.00440 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99936 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99897 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46784 * 176.74306 * 14 13 11 16 16 C 1.50697 * 115.54946 * 294.82867 * 15 14 13 17 17 H 1.08005 * 119.99762 * 98.08352 * 16 15 14 18 18 C 1.37875 * 120.00422 * 278.34754 * 16 15 14 19 19 N 1.31517 * 119.99863 * 6.21646 * 18 16 15 20 20 Si 1.86798 * 120.00276 * 186.20939 * 18 16 15 21 21 H 1.48492 * 109.47080 * 90.00655 * 20 18 16 22 22 H 1.48500 * 109.47014 * 210.00360 * 20 18 16 23 23 H 1.48503 * 109.47174 * 330.00352 * 20 18 16 24 24 C 1.52996 * 117.51766 * 80.53720 * 15 14 13 25 25 C 1.52997 * 60.00222 * 107.47961 * 24 15 14 26 26 C 1.53159 * 109.48561 * 309.86204 * 8 7 5 27 27 C 1.50922 * 127.90092 * 179.89275 * 4 3 2 28 28 H 1.08997 * 109.47186 * 269.97569 * 1 2 3 29 29 H 1.09002 * 109.46924 * 29.97365 * 1 2 3 30 30 H 1.08998 * 109.47466 * 149.97054 * 1 2 3 31 31 H 1.08998 * 109.58976 * 257.22795 * 7 5 4 32 32 H 1.08999 * 109.70576 * 136.86770 * 7 5 4 33 33 H 0.97002 * 119.99235 * 94.99555 * 10 8 7 34 34 H 0.96999 * 120.00156 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47208 * 56.74958 * 14 13 11 36 36 H 1.09000 * 109.47528 * 296.73924 * 14 13 11 37 37 H 0.96997 * 120.00340 * 185.02276 * 19 18 16 38 38 H 1.09012 * 117.49837 * 214.97048 * 24 15 14 39 39 H 1.09001 * 117.50258 * 359.97438 * 24 15 14 40 40 H 1.09005 * 117.49553 * 252.50574 * 25 24 15 41 41 H 1.08999 * 117.50102 * 107.49751 * 25 24 15 42 42 H 1.08995 * 109.50717 * 189.11223 * 26 8 7 43 43 H 1.08999 * 109.50835 * 309.25480 * 26 8 7 44 44 H 1.08998 * 109.72120 * 315.65608 * 27 4 3 45 45 H 1.09003 * 109.71972 * 76.26323 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7324 -0.0005 5 7 3.5897 -0.6134 0.0003 6 7 2.2675 -1.0663 -0.0005 7 6 4.8197 -1.4053 0.0026 8 6 5.9853 -0.5051 0.4285 9 1 5.8846 -0.2558 1.4848 10 7 7.2512 -1.2100 0.2118 11 6 7.7248 -2.0496 1.1536 12 8 7.1017 -2.2218 2.1834 13 7 8.8891 -2.6985 0.9539 14 6 9.4041 -3.6108 1.9780 15 6 10.6871 -4.2733 1.4720 16 6 10.5228 -5.1843 0.2828 17 1 10.7385 -4.8197 -0.7106 18 6 10.0919 -6.4816 0.4625 19 7 9.7076 -6.8880 1.6529 20 14 10.0537 -7.6621 -0.9847 21 1 11.3551 -8.3707 -1.0799 22 1 8.9644 -8.6519 -0.7874 23 1 9.8110 -6.9020 -2.2372 24 6 11.9848 -3.4691 1.5719 25 6 11.7439 -4.6522 2.5115 26 6 5.9681 0.7808 -0.4034 27 6 4.7522 1.6264 -0.0030 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5143 31 1 5.0056 -1.7946 -0.9984 32 1 4.7223 -2.2335 0.7045 33 1 7.7484 -1.0724 -0.6097 34 1 9.3864 -2.5609 0.1326 35 1 8.6586 -4.3773 2.1898 36 1 9.6189 -3.0512 2.8884 37 1 9.4740 -7.8185 1.7957 38 1 12.7198 -3.5988 0.7774 39 1 11.9247 -2.4675 1.9978 40 1 11.5253 -4.4291 3.5558 41 1 12.3204 -5.5604 2.3353 42 1 6.8815 1.3461 -0.2185 43 1 5.9032 0.5287 -1.4619 44 1 4.6133 2.4343 -0.7213 45 1 4.9051 2.0421 0.9930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366633395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:14 Heat of formation + Delta-G solvation = 52.640497 kcal Electronic energy + Delta-G solvation = -26511.856963 eV Core-core repulsion = 22758.660836 eV Total energy + Delta-G solvation = -3753.196128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42348 -41.13804 -38.87608 -38.08066 -35.11821 -34.71866 -34.27508 -33.97302 -32.21077 -30.44061 -28.94324 -27.80577 -26.82827 -25.23615 -23.62273 -22.94757 -21.98699 -21.57690 -21.20899 -20.74617 -19.21642 -18.23259 -17.85680 -17.46897 -16.92624 -16.66804 -16.37237 -15.98755 -15.71891 -15.56828 -15.24230 -15.15802 -14.89343 -14.45051 -14.28172 -14.11813 -13.68966 -13.53438 -13.44545 -13.41555 -13.00654 -12.87963 -12.79280 -12.75109 -12.39046 -12.18538 -12.08062 -12.01757 -11.53364 -11.32619 -11.13972 -10.81811 -10.79661 -10.48158 -10.46323 -10.33901 -10.04861 -9.66546 -8.10716 -6.22821 0.54216 1.08442 1.41557 1.44319 1.51434 1.76627 1.81837 2.18532 2.42516 2.91574 3.16954 3.20000 3.30044 3.47550 3.59078 3.72197 3.80869 3.90680 4.14768 4.27374 4.30081 4.40837 4.54818 4.58681 4.68917 4.70131 4.74976 4.75312 4.85432 4.93990 4.94982 5.01135 5.02923 5.08602 5.27840 5.29328 5.34076 5.45323 5.59878 5.63612 5.70930 5.79033 5.80251 6.11566 6.37243 6.85354 7.03599 7.21429 7.47338 7.64920 8.97474 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002785 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.246673 B =10052.838181 C =10935.364799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.205 3.795 3 N -0.561 5.561 4 C 0.274 3.726 5 N -0.380 5.380 6 N -0.360 5.360 7 C 0.116 3.884 8 C 0.162 3.838 9 H 0.081 0.919 10 N -0.718 5.718 11 C 0.697 3.303 12 O -0.644 6.644 13 N -0.710 5.710 14 C 0.198 3.802 15 C 0.006 3.994 16 C -0.499 4.499 17 H 0.066 0.934 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.262 1.262 24 C -0.171 4.171 25 C -0.167 4.167 26 C -0.121 4.121 27 C -0.032 4.032 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.420 0.580 34 H 0.409 0.591 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.138 0.862 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 19.439 -7.596 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.290 5.290 4 C -0.002 4.002 5 N -0.170 5.170 6 N -0.189 5.189 7 C -0.008 4.008 8 C 0.054 3.946 9 H 0.099 0.901 10 N -0.376 5.376 11 C 0.397 3.603 12 O -0.526 6.526 13 N -0.363 5.363 14 C 0.073 3.927 15 C 0.005 3.995 16 C -0.536 4.536 17 H 0.084 0.916 18 C -0.177 4.177 19 N -0.546 5.546 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.186 1.186 24 C -0.208 4.208 25 C -0.205 4.205 26 C -0.159 4.159 27 C -0.072 4.072 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.258 0.742 34 H 0.245 0.755 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.115 0.885 44 H 0.156 0.844 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.681 18.628 -6.590 21.583 hybrid contribution 0.427 -1.742 -0.771 1.952 sum -8.255 16.886 -7.361 20.186 Atomic orbital electron populations 1.20237 0.81408 1.05017 1.04690 1.25218 0.99871 0.85202 0.97352 1.70207 1.00535 1.31040 1.27229 1.25275 0.96157 0.83933 0.94823 1.50140 1.05317 1.06538 1.55044 1.77917 0.87754 1.24234 1.28998 1.22390 0.79666 0.94882 1.03838 1.20920 0.80625 0.91264 1.01777 0.90109 1.44678 1.23731 1.47569 1.21605 1.16211 0.81271 0.79338 0.83500 1.90887 1.61356 1.70152 1.30177 1.44860 1.22286 1.45936 1.23170 1.20409 0.95380 0.89088 0.87843 1.19046 0.86028 0.97497 0.96910 1.20696 1.44439 0.96016 0.92498 0.91602 1.25678 0.94237 1.00170 0.97594 1.70130 1.44642 1.16111 1.23678 0.85754 0.77213 0.79133 0.80731 1.20318 1.22370 1.18618 1.22987 1.01073 0.94651 1.02043 1.22479 1.05335 0.98058 0.94662 1.22049 1.00241 0.92979 1.00657 1.20618 0.84229 0.95498 1.06853 0.88846 0.88059 0.89339 0.88109 0.91565 0.74213 0.75509 0.95502 0.94881 0.93405 0.89379 0.88959 0.91167 0.91862 0.85239 0.88495 0.84427 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.93 10.51 71.24 0.75 -0.19 16 2 C 0.21 5.50 8.15 138.48 1.13 6.63 16 3 N -0.56 -14.68 11.18 -179.31 -2.01 -16.68 16 4 C 0.27 6.24 7.72 138.36 1.07 7.31 16 5 N -0.38 -10.38 4.04 -338.35 -1.37 -11.75 16 6 N -0.36 -11.29 12.74 -51.07 -0.65 -11.94 16 7 C 0.12 2.94 6.87 86.52 0.59 3.53 16 8 C 0.16 3.20 2.47 45.15 0.11 3.32 16 9 H 0.08 2.01 7.55 -2.39 -0.02 1.99 16 10 N -0.72 -15.42 5.08 -457.06 -2.32 -17.74 16 11 C 0.70 23.75 8.53 179.06 1.53 25.28 16 12 O -0.64 -28.45 16.01 -3.99 -0.06 -28.51 16 13 N -0.71 -24.93 5.47 -478.53 -2.62 -27.54 16 14 C 0.20 8.75 5.50 86.38 0.48 9.22 16 15 C 0.01 0.27 1.31 -52.93 -0.07 0.20 16 16 C -0.50 -24.48 8.68 25.60 0.22 -24.25 16 17 H 0.07 3.08 7.82 -2.91 -0.02 3.06 16 18 C 0.02 1.24 5.41 84.65 0.46 1.70 16 19 N -0.91 -51.14 13.07 21.45 0.28 -50.86 16 20 Si 0.95 41.63 29.55 68.60 2.03 43.66 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.17 -6.26 9.95 30.59 0.30 -5.95 16 25 C -0.17 -7.28 9.63 30.59 0.29 -6.98 16 26 C -0.12 -1.14 5.43 30.79 0.17 -0.97 16 27 C -0.03 -0.36 6.33 30.06 0.19 -0.17 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.42 5.82 8.62 -92.71 -0.80 5.02 16 34 H 0.41 12.12 8.45 -92.71 -0.78 11.34 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 38 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -75.90 377.76 -0.06 -75.96 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.56 Total: 26.76 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 7.22 Total: 18.66 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -8.68 Total: -136.51 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.06 Total: -28.51 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.90 -0.06 -75.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366633395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.599 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds