Wall clock time and date at job start Fri Apr 10 2020 18:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47006 * 2 1 4 4 C 1.46496 * 119.99783 * 275.00169 * 3 2 1 5 5 C 1.50699 * 109.47132 * 274.99657 * 4 3 2 6 6 H 1.08000 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46740 * 90.00460 * 9 7 5 11 11 H 1.48498 * 109.47399 * 209.99881 * 9 7 5 12 12 H 1.48494 * 109.47248 * 330.00523 * 9 7 5 13 13 S 1.65596 * 119.99783 * 94.99963 * 3 2 1 14 14 O 1.42100 * 106.39955 * 156.46421 * 13 3 2 15 15 O 1.42099 * 106.40416 * 23.54157 * 13 3 2 16 16 N 1.65600 * 107.21931 * 269.99784 * 13 3 2 17 17 C 1.46495 * 120.00407 * 270.00156 * 16 13 3 18 18 C 1.46507 * 119.99639 * 90.00394 * 16 13 3 19 19 C 1.53001 * 109.47218 * 99.58568 * 18 16 13 20 20 H 1.08997 * 110.36477 * 186.21524 * 19 18 16 21 21 C 1.54377 * 110.41359 * 63.85855 * 19 18 16 22 22 C 1.54253 * 105.05935 * 217.25004 * 21 19 18 23 23 C 1.54377 * 105.06363 * 0.02562 * 22 21 19 24 24 N 1.48559 * 104.59531 * 23.85166 * 23 22 21 25 25 C 1.46895 * 111.00315 * 200.95859 * 24 23 22 26 26 H 1.08996 * 109.47175 * 60.00119 * 1 2 3 27 27 H 1.08998 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47226 * 299.99905 * 1 2 3 29 29 H 1.08999 * 109.47226 * 240.00095 * 2 1 3 30 30 H 1.08996 * 109.47175 * 119.99881 * 2 1 3 31 31 H 1.08999 * 109.47253 * 35.00351 * 4 3 2 32 32 H 1.09006 * 109.46829 * 154.99961 * 4 3 2 33 33 H 0.97004 * 120.00284 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47683 * 274.28528 * 17 16 13 35 35 H 1.09003 * 109.47109 * 34.28353 * 17 16 13 36 36 H 1.09002 * 109.47437 * 154.27998 * 17 16 13 37 37 H 1.09000 * 109.47320 * 339.58032 * 18 16 13 38 38 H 1.09001 * 109.47047 * 219.58456 * 18 16 13 39 39 H 1.09000 * 110.32605 * 336.15090 * 21 19 18 40 40 H 1.09002 * 110.32232 * 98.35410 * 21 19 18 41 41 H 1.09004 * 110.32299 * 118.90102 * 22 21 19 42 42 H 1.08996 * 110.32745 * 241.00091 * 22 21 19 43 43 H 1.09002 * 110.41331 * 142.62866 * 23 22 21 44 44 H 1.09000 * 110.41154 * 264.95381 * 23 22 21 45 45 H 1.09000 * 109.47439 * 167.74750 * 25 24 23 46 46 H 1.08996 * 109.47332 * 287.75772 * 25 24 23 47 47 H 1.09008 * 109.46800 * 47.75302 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8528 2.3615 -3.0843 8 7 3.0283 3.1871 -3.6910 9 14 5.5098 1.9656 -3.8505 10 1 5.3747 0.7827 -4.7382 11 1 5.9787 3.1294 -4.6448 12 1 6.4932 1.6698 -2.7779 13 16 2.4121 2.1202 1.4287 14 8 3.3282 3.1571 1.1049 15 8 2.7095 1.0800 2.3499 16 7 1.0431 2.8642 1.9894 17 6 0.7516 4.2476 1.6056 18 6 0.1234 2.1389 2.8695 19 6 0.3795 2.5462 4.3219 20 1 -0.2195 1.9364 4.9981 21 6 0.0642 4.0437 4.5249 22 6 1.1365 4.5489 5.5119 23 6 2.0100 3.3143 5.8219 24 7 1.8231 2.4200 4.6505 25 6 2.1667 1.0321 4.9876 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3616 1.8098 -1.9452 32 1 2.0921 3.1803 -1.0755 33 1 3.2800 3.5896 -4.5369 34 1 1.2614 4.9289 2.2867 35 1 1.0999 4.4234 0.5878 36 1 -0.3235 4.4200 1.6565 37 1 0.2845 1.0666 2.7590 38 1 -0.9046 2.3815 2.6000 39 1 0.1394 4.5782 3.5779 40 1 -0.9313 4.1664 4.9517 41 1 1.7381 5.3315 5.0495 42 1 0.6674 4.9214 6.4226 43 1 3.0567 3.6033 5.9164 44 1 1.6675 2.8257 6.7340 45 1 1.8200 0.3691 4.1950 46 1 3.2479 0.9404 5.0912 47 1 1.6872 0.7571 5.9271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420745219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:04 Heat of formation + Delta-G solvation = -58.071623 kcal Electronic energy + Delta-G solvation = -27934.842610 eV Core-core repulsion = 24279.996845 eV Total energy + Delta-G solvation = -3654.845765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.32825 -36.40032 -35.94701 -35.46784 -34.84037 -32.60871 -32.06949 -30.13454 -29.85250 -26.92426 -26.50572 -25.22084 -23.77401 -23.06321 -21.57694 -20.89173 -20.28739 -18.05058 -17.15926 -16.77022 -16.19317 -16.05429 -15.78243 -15.25573 -15.00998 -14.35470 -13.97067 -13.81890 -13.52671 -13.45549 -13.27422 -13.00755 -12.73159 -12.51721 -12.24497 -12.04686 -12.01245 -11.90934 -11.57516 -11.46814 -11.29207 -11.23526 -11.13150 -10.95235 -10.93399 -10.87957 -10.77667 -10.60422 -10.40312 -10.34435 -10.30921 -9.89596 -9.68844 -8.68917 -8.39442 -8.29043 -7.95055 -6.01028 -4.04189 1.44526 3.34909 3.41221 3.47784 3.66568 4.09790 4.34518 4.50715 4.57902 4.71097 4.95915 5.08754 5.12921 5.21654 5.30652 5.34241 5.44612 5.48514 5.53739 5.62791 5.64130 5.70121 5.72272 5.77834 5.78767 5.85468 5.86285 5.91293 6.00204 6.06442 6.12850 6.17903 6.33114 6.40993 6.44335 6.64193 6.69505 6.90527 7.03318 7.22864 7.32468 7.51945 7.74149 7.97642 8.28153 8.98208 9.60641 11.07569 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.004484 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.477482 B = 6243.580403 C = 6424.621512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.998 5.998 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.789 3.211 14 O -0.968 6.968 15 O -0.983 6.983 16 N -0.998 5.998 17 C 0.099 3.901 18 C 0.142 3.858 19 C 0.043 3.957 20 H 0.055 0.945 21 C -0.134 4.134 22 C -0.123 4.123 23 C 0.031 3.969 24 N -0.503 5.503 25 C 0.027 3.973 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 -1.222 16.265 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.839 5.839 4 C 0.137 3.863 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.798 3.202 14 O -0.951 6.951 15 O -0.967 6.967 16 N -0.835 5.835 17 C -0.047 4.047 18 C 0.015 3.985 19 C -0.068 4.068 20 H 0.073 0.927 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.097 4.097 24 N -0.227 5.227 25 C -0.122 4.122 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -9.140 -0.943 16.053 18.497 hybrid contribution -0.015 -0.384 0.016 0.385 sum -9.155 -1.327 16.069 18.541 Atomic orbital electron populations 1.22287 0.97521 1.01203 1.02011 1.21088 0.92843 0.83651 1.03277 1.57951 1.81092 1.21219 1.23632 1.18969 0.97129 0.90971 0.79244 1.21504 1.02122 1.27405 1.05406 0.92299 1.24917 0.97300 0.94872 0.96925 1.69918 1.36163 1.30373 1.17196 0.86544 0.84207 0.77800 0.79204 1.20666 1.21078 1.19708 1.01861 0.73038 0.73194 0.72113 1.93591 1.59376 1.57907 1.84274 1.93472 1.83011 1.57809 1.62425 1.57867 1.43143 1.21829 1.60659 1.21438 1.00830 0.82001 1.00437 1.21111 0.93458 0.96091 0.87832 1.23131 0.89881 0.96656 0.97102 0.92699 1.22623 0.97991 0.95362 1.01186 1.22253 0.97200 0.97807 0.98890 1.23127 1.00644 0.93835 0.92078 1.65167 1.17138 1.08052 1.32344 1.22499 1.01749 0.89384 0.98566 0.92032 0.92431 0.93401 0.90076 0.90722 0.95003 0.94786 0.92788 0.92757 0.91077 0.91691 0.90253 0.90690 0.89192 0.91865 0.91074 0.91826 0.90376 0.94261 0.89387 0.91474 0.97012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.12 2.06 6.40 -4.04 -0.03 2.03 16 3 N -1.00 -20.90 2.82 -115.66 -0.33 -21.23 16 4 C 0.26 6.55 5.10 -5.20 -0.03 6.53 16 5 C -0.52 -14.97 9.38 -34.44 -0.32 -15.29 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 13 S 2.79 56.69 5.81 -107.50 -0.62 56.06 16 14 O -0.97 -24.28 16.27 -57.17 -0.93 -25.21 16 15 O -0.98 -19.58 11.56 -57.17 -0.66 -20.24 16 16 N -1.00 -15.44 2.93 -121.76 -0.36 -15.79 16 17 C 0.10 1.39 8.33 59.84 0.50 1.89 16 18 C 0.14 1.74 4.46 -4.04 -0.02 1.72 16 19 C 0.04 0.50 2.66 -66.06 -0.18 0.32 16 20 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 21 C -0.13 -1.37 6.44 -25.35 -0.16 -1.54 16 22 C -0.12 -1.27 7.00 -25.35 -0.18 -1.45 16 23 C 0.03 0.37 6.49 -2.18 -0.01 0.35 16 24 N -0.50 -7.03 4.18 -230.33 -0.96 -7.99 16 25 C 0.03 0.36 8.09 60.06 0.49 0.85 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.60 6.23 -51.93 -0.32 0.28 16 29 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 30 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16 31 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.03 0.92 7.24 -51.93 -0.38 0.54 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 35 H 0.07 1.16 7.57 -51.93 -0.39 0.76 16 36 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 37 H 0.08 0.98 5.88 -51.93 -0.31 0.68 16 38 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.09 0.97 3.78 -51.93 -0.20 0.77 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.41 7.79 -51.93 -0.40 0.01 16 45 H 0.09 1.29 5.81 -51.93 -0.30 0.98 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.01 0.13 7.83 -51.92 -0.41 -0.27 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -33.41 366.82 -10.28 -43.69 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.01 Total: -1.41 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.34 Total: -4.91 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.91 Total: -70.64 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.59 Total: -45.45 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 56.69 SS G_CDS: -0.62 Total: 56.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.41 -10.28 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420745219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.379 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds