Wall clock time and date at job start Fri Apr 10 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47006 * 2 1 4 4 C 1.46496 * 119.99783 * 275.00169 * 3 2 1 5 5 C 1.50699 * 109.47132 * 274.99657 * 4 3 2 6 6 H 1.08000 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46740 * 90.00460 * 9 7 5 11 11 H 1.48498 * 109.47399 * 209.99881 * 9 7 5 12 12 H 1.48494 * 109.47248 * 330.00523 * 9 7 5 13 13 S 1.65596 * 119.99783 * 94.99963 * 3 2 1 14 14 O 1.42100 * 106.39955 * 156.46421 * 13 3 2 15 15 O 1.42099 * 106.40416 * 23.54157 * 13 3 2 16 16 N 1.65600 * 107.21931 * 269.99784 * 13 3 2 17 17 C 1.46495 * 120.00407 * 270.00156 * 16 13 3 18 18 C 1.46507 * 119.99639 * 90.00394 * 16 13 3 19 19 C 1.53001 * 109.47218 * 99.58568 * 18 16 13 20 20 H 1.08997 * 110.36477 * 186.21524 * 19 18 16 21 21 C 1.54377 * 110.41359 * 63.85855 * 19 18 16 22 22 C 1.54253 * 105.05935 * 217.25004 * 21 19 18 23 23 C 1.54377 * 105.06363 * 0.02562 * 22 21 19 24 24 N 1.48559 * 104.59531 * 23.85166 * 23 22 21 25 25 C 1.46895 * 111.00315 * 200.95859 * 24 23 22 26 26 H 1.08996 * 109.47175 * 60.00119 * 1 2 3 27 27 H 1.08998 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47226 * 299.99905 * 1 2 3 29 29 H 1.08999 * 109.47226 * 240.00095 * 2 1 3 30 30 H 1.08996 * 109.47175 * 119.99881 * 2 1 3 31 31 H 1.08999 * 109.47253 * 35.00351 * 4 3 2 32 32 H 1.09006 * 109.46829 * 154.99961 * 4 3 2 33 33 H 0.97004 * 120.00284 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47683 * 274.28528 * 17 16 13 35 35 H 1.09003 * 109.47109 * 34.28353 * 17 16 13 36 36 H 1.09002 * 109.47437 * 154.27998 * 17 16 13 37 37 H 1.09000 * 109.47320 * 339.58032 * 18 16 13 38 38 H 1.09001 * 109.47047 * 219.58456 * 18 16 13 39 39 H 1.09000 * 110.32605 * 336.15090 * 21 19 18 40 40 H 1.09002 * 110.32232 * 98.35410 * 21 19 18 41 41 H 1.09004 * 110.32299 * 118.90102 * 22 21 19 42 42 H 1.08996 * 110.32745 * 241.00091 * 22 21 19 43 43 H 1.09002 * 110.41331 * 142.62866 * 23 22 21 44 44 H 1.09000 * 110.41154 * 264.95381 * 23 22 21 45 45 H 1.09000 * 109.47439 * 167.74750 * 25 24 23 46 46 H 1.08996 * 109.47332 * 287.75772 * 25 24 23 47 47 H 1.09008 * 109.46800 * 47.75302 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8528 2.3615 -3.0843 8 7 3.0283 3.1871 -3.6910 9 14 5.5098 1.9656 -3.8505 10 1 5.3747 0.7827 -4.7382 11 1 5.9787 3.1294 -4.6448 12 1 6.4932 1.6698 -2.7779 13 16 2.4121 2.1202 1.4287 14 8 3.3282 3.1571 1.1049 15 8 2.7095 1.0800 2.3499 16 7 1.0431 2.8642 1.9894 17 6 0.7516 4.2476 1.6056 18 6 0.1234 2.1389 2.8695 19 6 0.3795 2.5462 4.3219 20 1 -0.2195 1.9364 4.9981 21 6 0.0642 4.0437 4.5249 22 6 1.1365 4.5489 5.5119 23 6 2.0100 3.3143 5.8219 24 7 1.8231 2.4200 4.6505 25 6 2.1667 1.0321 4.9876 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3616 1.8098 -1.9452 32 1 2.0921 3.1803 -1.0755 33 1 3.2800 3.5896 -4.5369 34 1 1.2614 4.9289 2.2867 35 1 1.0999 4.4234 0.5878 36 1 -0.3235 4.4200 1.6565 37 1 0.2845 1.0666 2.7590 38 1 -0.9046 2.3815 2.6000 39 1 0.1394 4.5782 3.5779 40 1 -0.9313 4.1664 4.9517 41 1 1.7381 5.3315 5.0495 42 1 0.6674 4.9214 6.4226 43 1 3.0567 3.6033 5.9164 44 1 1.6675 2.8257 6.7340 45 1 1.8200 0.3691 4.1950 46 1 3.2479 0.9404 5.0912 47 1 1.6872 0.7571 5.9271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420745219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:03 Heat of formation + Delta-G solvation = -82.087940 kcal Electronic energy + Delta-G solvation = -27935.884036 eV Core-core repulsion = 24279.996845 eV Total energy + Delta-G solvation = -3655.887191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25855 -38.07817 -37.60472 -36.63170 -36.55095 -34.69678 -32.96867 -31.52838 -31.01472 -28.45760 -27.94164 -26.21603 -24.93224 -24.84412 -23.15292 -21.74957 -21.26279 -19.56238 -18.81189 -18.31802 -18.11263 -17.28524 -17.00573 -16.61659 -16.22133 -15.97878 -15.37022 -14.95706 -14.78880 -14.64734 -14.52820 -14.42065 -14.14675 -13.75276 -13.67265 -13.48328 -13.30369 -13.13970 -13.04249 -12.83566 -12.74559 -12.71962 -12.67545 -12.56404 -12.30529 -12.19102 -12.09882 -11.95695 -11.88404 -11.73538 -11.61746 -11.49553 -11.22665 -10.58560 -9.86992 -9.69423 -9.26081 -8.19379 -6.30937 -0.12610 1.37227 1.39956 1.50632 2.24432 2.40847 2.82051 3.10860 3.17198 3.60314 3.74003 3.85224 3.96726 4.12017 4.18120 4.30724 4.41278 4.48882 4.51123 4.53520 4.59341 4.66141 4.67997 4.75733 4.77747 4.79117 4.89231 4.93325 5.01452 5.05688 5.09393 5.16129 5.17433 5.20121 5.27392 5.36041 5.44689 5.46656 5.55140 5.74481 5.76150 6.06884 6.11364 6.15658 6.28082 6.77176 7.37532 8.87954 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.004484 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.477482 B = 6243.580403 C = 6424.621512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -1.005 6.005 4 C 0.278 3.722 5 C -0.548 4.548 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.277 1.277 13 S 2.797 3.203 14 O -1.024 7.024 15 O -0.984 6.984 16 N -0.988 5.988 17 C 0.097 3.903 18 C 0.133 3.867 19 C 0.041 3.959 20 H 0.077 0.923 21 C -0.132 4.132 22 C -0.122 4.122 23 C 0.029 3.971 24 N -0.537 5.537 25 C 0.031 3.969 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -1.702 17.573 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.845 5.845 4 C 0.154 3.846 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.202 1.202 13 S 2.807 3.193 14 O -1.008 7.008 15 O -0.968 6.968 16 N -0.828 5.828 17 C -0.048 4.048 18 C 0.007 3.993 19 C -0.068 4.068 20 H 0.095 0.905 21 C -0.170 4.170 22 C -0.160 4.160 23 C -0.099 4.099 24 N -0.262 5.262 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.160 -1.454 17.369 20.697 hybrid contribution 0.572 -0.250 -0.291 0.688 sum -10.588 -1.703 17.079 20.167 Atomic orbital electron populations 1.22199 0.94404 1.03227 1.02208 1.21330 0.95491 0.81716 1.03082 1.57871 1.81768 1.22563 1.22258 1.18472 0.95443 0.90040 0.80688 1.21832 1.03417 1.27493 1.06015 0.93521 1.25714 1.00793 0.94706 0.97411 1.70002 1.37735 1.30934 1.17622 0.85632 0.79778 0.78400 0.78388 1.18865 1.20151 1.20199 1.01348 0.73517 0.72586 0.71876 1.93513 1.62437 1.59755 1.85106 1.93469 1.83565 1.57819 1.61899 1.57428 1.42435 1.22233 1.60732 1.21571 1.03465 0.81105 0.98704 1.21505 0.94311 0.95739 0.87743 1.23212 0.88825 0.98052 0.96753 0.90502 1.22646 0.99248 0.94076 1.01004 1.22260 0.97008 0.96758 0.99961 1.23160 1.00364 0.94293 0.92105 1.65127 1.19114 1.08168 1.33773 1.22375 1.00631 0.89550 0.99215 0.93328 0.89468 0.91654 0.91537 0.89659 0.95758 0.97138 0.92379 0.92583 0.94067 0.87386 0.90364 0.87060 0.89861 0.89129 0.92358 0.89520 0.91808 0.92682 0.90597 0.93531 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.24 71.98 0.74 -3.47 16 2 C 0.11 3.78 6.40 86.38 0.55 4.34 16 3 N -1.00 -42.96 2.82 -519.84 -1.47 -44.43 16 4 C 0.28 14.56 5.10 85.63 0.44 15.00 16 5 C -0.55 -32.26 9.38 25.60 0.24 -32.02 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.77 5.46 84.65 0.46 1.23 16 8 N -0.92 -55.17 13.29 21.45 0.28 -54.89 16 9 Si 0.95 45.87 29.54 68.60 2.03 47.89 16 10 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 S 2.80 115.79 5.81 -56.49 -0.33 115.46 16 14 O -1.02 -53.76 16.27 -128.00 -2.08 -55.84 16 15 O -0.98 -39.47 11.56 -128.00 -1.48 -40.95 16 16 N -0.99 -29.54 2.93 -539.13 -1.58 -31.12 16 17 C 0.10 2.65 8.33 127.77 1.06 3.72 16 18 C 0.13 2.85 4.46 86.38 0.39 3.24 16 19 C 0.04 0.84 2.66 45.06 0.12 0.96 16 20 H 0.08 1.25 8.00 -2.39 -0.02 1.23 16 21 C -0.13 -2.25 6.44 31.49 0.20 -2.04 16 22 C -0.12 -2.22 7.00 31.49 0.22 -2.00 16 23 C 0.03 0.63 6.49 86.45 0.56 1.19 16 24 N -0.54 -14.27 4.18 -882.63 -3.69 -17.95 16 25 C 0.03 0.82 8.09 127.69 1.03 1.85 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.46 6.23 -2.39 -0.01 1.44 16 29 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 30 H 0.09 2.74 6.91 -2.39 -0.02 2.72 16 31 H 0.02 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.01 0.60 7.24 -2.38 -0.02 0.59 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.06 1.51 7.06 -2.39 -0.02 1.50 16 35 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 36 H 0.11 2.00 7.60 -2.39 -0.02 1.98 16 37 H 0.08 1.72 5.88 -2.39 -0.01 1.71 16 38 H 0.11 1.64 8.02 -2.39 -0.02 1.62 16 39 H 0.08 1.53 3.78 -2.39 -0.01 1.52 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.01 7.79 -2.39 -0.02 1.00 16 45 H 0.08 2.15 5.81 -2.39 -0.01 2.13 16 46 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.03 0.73 7.83 -2.38 -0.02 0.71 16 Total: -1.00 -74.97 366.82 -1.36 -76.33 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.94 Total: 13.51 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.02 Total: -8.01 kcal Atomic # 7 Polarization: -141.94 SS G_CDS: -6.45 Total: -148.39 kcal Atomic # 8 Polarization: -93.23 SS G_CDS: -3.56 Total: -96.79 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 115.79 SS G_CDS: -0.33 Total: 115.46 kcal Total: -74.97 -1.36 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420745219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.754 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds