Wall clock time and date at job start Fri Apr 10 2020 18:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00011 * 2 1 4 4 C 1.46896 * 111.00328 * 123.95574 * 2 1 3 5 5 C 1.53003 * 109.47089 * 66.04404 * 4 2 1 6 6 C 1.50702 * 109.46892 * 180.02562 * 5 4 2 7 7 C 1.38118 * 120.03864 * 265.27329 * 6 5 4 8 8 C 1.38274 * 120.07408 * 180.27908 * 7 6 5 9 9 C 1.38312 * 120.15226 * 359.72403 * 8 7 6 10 10 C 1.38070 * 120.07651 * 0.02562 * 9 8 7 11 11 C 1.38908 * 120.03795 * 85.00128 * 6 5 4 12 12 N 1.39723 * 120.07835 * 359.97438 * 11 6 5 13 13 C 1.34770 * 120.00400 * 154.88390 * 12 11 6 14 14 O 1.21381 * 120.00393 * 354.47014 * 13 12 11 15 15 C 1.49357 * 120.00227 * 174.47446 * 13 12 11 16 16 O 1.21358 * 119.99921 * 359.72391 * 15 13 12 17 17 N 1.34781 * 119.99933 * 179.97438 * 15 13 12 18 18 C 1.46497 * 119.99574 * 180.02562 * 17 15 13 19 19 C 1.50698 * 109.47176 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99557 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00462 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99997 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00048 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47019 * 89.99954 * 23 21 19 25 25 H 1.48503 * 109.46958 * 209.99934 * 23 21 19 26 26 H 1.48499 * 109.47160 * 329.99993 * 23 21 19 27 27 H 1.08999 * 109.47165 * 296.04425 * 1 2 3 28 28 H 1.08997 * 109.47161 * 56.04302 * 1 2 3 29 29 H 1.09005 * 109.47014 * 176.05022 * 1 2 3 30 30 H 1.08994 * 109.47187 * 183.96027 * 3 2 1 31 31 H 1.09004 * 109.46766 * 303.95644 * 3 2 1 32 32 H 1.08994 * 109.47059 * 63.95242 * 3 2 1 33 33 H 1.09004 * 109.47228 * 306.04891 * 4 2 1 34 34 H 1.08991 * 109.47503 * 186.04509 * 4 2 1 35 35 H 1.09000 * 109.47403 * 60.00237 * 5 4 2 36 36 H 1.09005 * 109.47249 * 299.99906 * 5 4 2 37 37 H 1.08006 * 119.96233 * 0.02562 * 7 6 5 38 38 H 1.08004 * 119.91944 * 179.74843 * 8 7 6 39 39 H 1.08005 * 119.95585 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.03791 * 180.02562 * 10 9 8 41 41 H 0.97001 * 119.99586 * 334.87913 * 12 11 6 42 42 H 0.96996 * 120.00447 * 359.97438 * 17 15 13 43 43 H 1.09002 * 109.47108 * 299.99866 * 18 17 15 44 44 H 1.09000 * 109.47531 * 59.99687 * 18 17 15 45 45 H 0.97003 * 120.00316 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1711 -3.0283 2.1375 7 6 3.3982 -3.6549 2.0412 8 6 3.8915 -4.3808 3.1097 9 6 3.1610 -4.4773 4.2803 10 6 1.9360 -3.8492 4.3853 11 6 1.4376 -3.1185 3.3137 12 7 0.1987 -2.4807 3.4169 13 6 -0.7251 -2.9392 4.2845 14 8 -0.5213 -3.9635 4.9031 15 6 -1.9998 -2.1869 4.4849 16 8 -2.2015 -1.1602 3.8702 17 7 -2.9238 -2.6458 5.3522 18 6 -4.1743 -1.9082 5.5483 19 6 -5.0274 -2.6263 6.5619 20 1 -4.6737 -3.5410 7.0144 21 6 -6.2595 -2.1158 6.9116 22 7 -6.6901 -1.0018 6.3610 23 14 -7.3173 -3.0065 8.1675 24 1 -6.9996 -2.5034 9.5281 25 1 -8.7513 -2.7598 7.8709 26 1 -7.0418 -4.4642 8.1020 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.5612 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6214 0.0450 36 1 0.5472 -2.3475 0.9323 37 1 3.9713 -3.5812 1.1287 38 1 4.8495 -4.8731 3.0302 39 1 3.5495 -5.0448 5.1131 40 1 1.3664 -3.9247 5.2997 41 1 0.0035 -1.7079 2.8641 42 1 -2.7612 -3.4647 5.8460 43 1 -3.9510 -0.9038 5.9082 44 1 -4.7106 -1.8440 4.6016 45 1 -7.5570 -0.6428 6.6067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427849458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:10 Heat of formation + Delta-G solvation = -40.199253 kcal Electronic energy + Delta-G solvation = -26400.516882 eV Core-core repulsion = 22611.002169 eV Total energy + Delta-G solvation = -3789.514712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05436 -39.36818 -38.02688 -37.57633 -35.28571 -34.28139 -33.16500 -32.40889 -30.09204 -28.90657 -27.78157 -27.72731 -25.11233 -24.68812 -23.07582 -22.02857 -21.50682 -20.85671 -19.90609 -18.68928 -17.50373 -16.68320 -16.30602 -15.92083 -15.73202 -15.62169 -15.33184 -15.13340 -14.88432 -14.71137 -14.26741 -14.07684 -13.77419 -13.48788 -13.21747 -13.16338 -12.98252 -12.53535 -12.11516 -12.09097 -11.98807 -11.97994 -11.93131 -11.69304 -11.31476 -11.18980 -11.06086 -10.95407 -10.92360 -10.57150 -10.34773 -9.52544 -9.18958 -8.88670 -8.87514 -8.61270 -8.20990 -8.13656 -6.25770 -4.33358 0.99737 1.25924 1.85716 2.58462 3.21160 3.27608 3.30761 3.46933 3.64715 3.79308 3.98354 4.28657 4.59513 4.65157 4.83025 4.88754 4.93321 4.99237 5.04046 5.11131 5.20002 5.22555 5.30129 5.33774 5.38760 5.45148 5.49874 5.62639 5.67419 5.79224 5.84550 5.96928 6.11919 6.25382 6.36546 6.43993 6.74665 6.75247 6.88434 6.96535 7.02387 7.16381 7.31025 7.50366 7.77637 7.82669 8.31310 8.49845 8.77705 9.33164 10.84273 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002980 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.163384 B = 9392.806930 C =11212.118391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.547 5.547 3 C 0.023 3.977 4 C 0.057 3.943 5 C -0.080 4.080 6 C -0.112 4.112 7 C -0.094 4.094 8 C -0.139 4.139 9 C -0.101 4.101 10 C -0.129 4.129 11 C 0.154 3.846 12 N -0.648 5.648 13 C 0.507 3.493 14 O -0.500 6.500 15 C 0.490 3.510 16 O -0.536 6.536 17 N -0.669 5.669 18 C 0.246 3.754 19 C -0.547 4.547 20 H 0.067 0.933 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.147 0.853 41 H 0.420 0.580 42 H 0.405 0.595 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.905 -1.528 -10.635 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.158 4.158 9 C -0.120 4.120 10 C -0.149 4.149 11 C 0.059 3.941 12 N -0.294 5.294 13 C 0.290 3.710 14 O -0.374 6.374 15 C 0.269 3.731 16 O -0.415 6.415 17 N -0.318 5.318 18 C 0.127 3.873 19 C -0.585 4.585 20 H 0.085 0.915 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.258 0.742 42 H 0.240 0.760 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.756 -1.573 -11.006 23.546 hybrid contribution -0.951 0.006 1.382 1.678 sum 19.805 -1.567 -9.624 22.075 Atomic orbital electron populations 1.22522 0.86884 1.02770 1.01247 1.62022 1.08431 1.13861 1.42780 1.22383 1.00570 0.88770 1.00780 1.22170 1.00558 0.92886 0.91513 1.20563 1.01416 0.93425 0.96341 1.19552 0.96389 1.02148 0.93459 1.20822 0.94506 0.97038 0.98936 1.21113 1.00301 1.00565 0.93808 1.21058 0.94048 0.98942 0.97950 1.21451 0.96228 0.98505 0.98764 1.17696 0.85324 0.97055 0.94031 1.43305 1.12711 1.32642 1.40701 1.20940 0.85402 0.85040 0.79616 1.90701 1.78237 1.22812 1.45619 1.19677 0.84552 0.85997 0.82903 1.90731 1.78565 1.24093 1.48129 1.46430 1.18607 1.27743 1.38986 1.19359 0.77999 0.92339 0.97642 1.21194 1.02530 1.10235 1.24585 0.91529 1.24937 0.97454 0.94957 0.96500 1.69962 1.20258 1.19739 1.42259 0.86359 0.79292 0.79942 0.81050 1.20354 1.20923 1.19593 0.94763 0.91192 0.90961 0.91441 0.91257 0.95424 0.94704 0.90330 0.89470 0.90892 0.85631 0.86049 0.85727 0.83587 0.74176 0.76038 0.94693 0.94665 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.32 60.07 0.56 0.70 16 2 N -0.55 -5.22 5.02 -251.27 -1.26 -6.48 16 3 C 0.02 0.19 9.57 60.06 0.57 0.76 16 4 C 0.06 0.53 4.85 -3.82 -0.02 0.51 16 5 C -0.08 -0.76 4.64 -27.88 -0.13 -0.89 16 6 C -0.11 -1.21 5.15 -104.42 -0.54 -1.75 16 7 C -0.09 -0.88 9.68 -39.61 -0.38 -1.27 16 8 C -0.14 -1.29 10.04 -39.54 -0.40 -1.68 16 9 C -0.10 -1.08 10.04 -39.62 -0.40 -1.48 16 10 C -0.13 -1.70 8.72 -39.38 -0.34 -2.05 16 11 C 0.15 2.01 6.41 -83.75 -0.54 1.47 16 12 N -0.65 -9.16 4.97 -10.30 -0.05 -9.21 16 13 C 0.51 8.54 7.69 -11.63 -0.09 8.45 16 14 O -0.50 -8.88 13.64 5.47 0.07 -8.81 16 15 C 0.49 9.68 7.89 -11.63 -0.09 9.59 16 16 O -0.54 -11.61 16.48 5.49 0.09 -11.52 16 17 N -0.67 -14.19 5.54 -61.94 -0.34 -14.54 16 18 C 0.25 6.30 5.43 -5.20 -0.03 6.27 16 19 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 20 H 0.07 1.68 7.60 -52.48 -0.40 1.29 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 23 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.03 0.36 7.42 -51.93 -0.39 -0.02 16 34 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.07 0.76 5.68 -51.93 -0.29 0.46 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.15 2.13 5.79 -52.49 -0.30 1.83 16 41 H 0.42 5.57 6.24 -40.82 -0.25 5.31 16 42 H 0.40 7.95 7.79 -40.82 -0.32 7.63 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -30.07 376.46 -8.82 -38.89 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.49 Total: 9.59 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.24 Total: 5.43 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.92 Total: -54.83 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.17 Total: -20.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.07 -8.82 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427849458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.307 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds